Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 9.7e-107 390.2 201 100.0
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 6.9e-105 384.0 201 97.5
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 1.1e-102 376.7 202 96.0
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 3.0e-100 368.6 202 93.1
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 3.9e-100 368.2 202 93.1
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 3.9e-100 368.2 202 93.1
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 3.9e-100 368.2 202 93.1
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 3.9e-100 368.2 202 94.1
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 8.8e-100 367.1 203 92.6
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 2.5e-99 365.5 202 92.1
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 3.3e-99 365.2 202 93.6
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 9.1e-97 357.1 195 93.3
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 1.1e-83 313.5 200 79.0
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 1.4e-81 306.6 205 75.6
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 9.1e-81 303.9 204 75.5
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 2.0e-80 302.8 200 76.5
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 4.5e-80 301.6 187 81.3
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 1.0e-79 300.4 200 76.0
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 1.3e-79 300.1 206 74.8
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 3.8e-79 298.5 204 74.5
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 3.8e-79 298.5 204 74.5
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 5.0e-79 298.1 204 74.0
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 8.5e-79 297.4 205 74.6
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 2.5e-78 295.8 193 76.7
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 9.4e-78 293.9 201 74.1
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 2.1e-77 292.7 201 73.6
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 3.6e-77 292.0 201 74.6
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 4.7e-77 291.6 204 73.5
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 6.1e-77 291.2 201 74.1
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 6.1e-77 291.2 204 73.0
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 8.0e-77 290.8 202 74.8
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 8.0e-77 290.8 204 73.0
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.0e-76 290.4 201 74.1
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.0e-76 290.4 201 74.1
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.4e-76 290.0 201 74.1
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 2.3e-76 289.3 204 74.0
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 3.0e-76 288.9 205 72.7
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 4.0e-76 288.5 205 73.7
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 5.2e-76 288.1 201 73.6
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 8.8e-76 287.3 185 78.9
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 1.2e-75 287.0 204 72.5
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 1.2e-75 287.0 200 74.5
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 1.5e-75 286.6 204 71.6
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 1.5e-75 286.6 205 70.7
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 2.6e-75 285.8 206 71.4
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 2.6e-75 285.8 205 72.7
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 3.3e-75 285.4 205 74.1
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 3.3e-75 285.4 201 72.6
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 4.4e-75 285.0 196 73.5
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 5.7e-75 284.6 200 73.0
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 5.7e-75 284.6 205 70.7
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 9.7e-75 283.9 199 73.9
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 9.7e-75 283.9 203 73.4
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 9.7e-75 283.9 193 74.1
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 9.7e-75 283.9 204 71.6
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 1.3e-74 283.5 188 76.6
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 1.3e-74 283.5 205 70.2
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 2.8e-74 282.3 206 69.9
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 2.8e-74 282.3 194 72.7
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 2.8e-74 282.3 183 77.6
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 2.8e-74 282.3 198 74.7
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 6.3e-74 281.2 183 77.6
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 8.2e-74 280.8 200 71.5
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 1.1e-73 280.4 206 69.4
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 1.8e-73 279.6 201 71.6
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 2.4e-73 279.3 194 73.7
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 2.4e-73 279.3 200 71.5
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 2.4e-73 279.3 200 71.5
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 2.4e-73 279.3 205 70.7
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 4.1e-73 278.5 206 70.4
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 7.0e-73 277.7 202 70.3
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 1.6e-72 276.6 204 70.6
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 5.9e-72 274.6 220 67.3
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 5.9e-72 274.6 197 71.6
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 5.9e-72 274.6 205 71.2
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 7.7e-72 274.2 204 69.6
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 1.7e-71 273.1 202 70.3
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 2.9e-71 272.3 200 68.0
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 5.0e-71 271.6 191 71.7
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 8.5e-71 270.8 198 70.2
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 8.5e-71 270.8 206 71.4
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.2e-70 268.9 222 65.8
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 4.2e-70 268.5 199 68.3
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 5.5e-70 268.1 194 70.1
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 1.6e-69 266.5 189 70.4
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 2.7e-69 265.8 205 70.7
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 2.7e-69 265.8 201 69.7
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 6.1e-69 264.6 189 69.8
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.0e-68 263.8 197 69.5
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 3.0e-68 262.3 205 67.3
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.2e-67 260.4 204 69.6
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 7.5e-67 257.7 167 78.4
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 9.8e-67 257.3 225 64.4
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 2.2e-66 256.1 233 59.2
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 1.1e-65 253.8 205 64.4
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 2.3e-63 246.1 314 48.4
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 9.5e-62 240.7 240 55.8
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 2.1e-61 239.6 161 76.4
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 5.7e-59 231.5 204 59.3
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 2.2e-58 229.6 159 71.7
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 5.0e-55 218.4 154 74.0
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 1.1e-49 200.7 133 75.2
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 3.9e-47 192.2 134 72.4
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 6.6e-47 191.4 116 82.8
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 4.3e-46 188.7 118 78.0
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 7.3e-46 188.0 125 75.2
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.5e-43 180.3 133 69.2
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 4.9e-42 175.3 106 80.2
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 6.4e-42 174.9 152 60.5
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 2.1e-40 169.9 118 70.3
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 1.7e-39 166.8 108 75.9
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 8.3e-34 147.9 184 46.7
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 1.4e-33 147.1 176 43.2
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 9.2e-33 144.4 147 55.1
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 7.8e-32 141.4 188 48.4
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 8.4e-26 121.3 92 67.4
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 3.0e-23 112.8 138 44.9
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 6.6e-23 111.7 202 35.6
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 1.9e-22 110.2 134 47.0
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 3.1e-20 102.8 188 37.2
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 4.0e-20 102.4 203 33.5
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 2.6e-11 73.2 184 30.4
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-08 63.5 48 62.5
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 3.9e-07 59.3 71 43.7
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 6.7e-07 58.5 35 80.0
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 3.3e-06 56.2 55 58.2


User provided reference genes

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