Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.4e-69 265.4 132 100.0
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.1e-63 246.5 132 90.9
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.8e-61 239.2 132 89.4
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.1e-57 225.7 128 85.2
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 6.0e-57 224.2 129 84.5
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 4.0e-53 211.5 126 84.9
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.6e-49 199.5 129 75.2
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 2.7e-49 198.7 128 75.8
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 2.7e-49 198.7 128 75.8
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 2.7e-49 198.7 128 75.8
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.5e-49 198.4 127 78.0
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 6.0e-49 197.6 129 72.1
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 6.0e-49 197.6 128 75.8
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.9e-47 192.6 129 73.6
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 4.3e-47 191.4 123 76.4
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 9.6e-47 190.3 130 71.5
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.3e-46 189.9 128 70.3
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.3e-46 189.9 128 71.9
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.3e-46 189.9 119 78.2
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.8e-45 186.0 120 74.2
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.8e-45 186.0 120 74.2
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.5e-44 183.0 120 73.3
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 7.6e-44 180.6 120 72.5
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.0e-43 180.3 128 71.1
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.0e-43 180.3 128 71.1
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.9e-39 166.0 131 62.6
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.9e-39 166.0 131 62.6
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.9e-39 166.0 131 62.6
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 5.7e-39 164.5 132 62.1
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 9.7e-39 163.7 131 60.3
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 9.7e-39 163.7 128 63.3
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.6e-38 162.9 132 61.4
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.8e-38 161.4 131 61.1
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.2e-38 160.6 131 60.3
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 1.4e-37 159.8 128 60.2
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 3.1e-37 158.7 129 60.5
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 4.1e-37 158.3 131 57.3
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 5.3e-37 157.9 131 61.1
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 5.3e-37 157.9 132 59.1
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 5.3e-37 157.9 128 58.6
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.2e-36 156.8 131 55.7
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.5e-36 156.4 132 57.6
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.5e-36 156.4 132 59.1
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 2.6e-36 155.6 132 58.3
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 3.4e-36 155.2 129 58.1
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 5.9e-36 154.5 131 56.5
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.9e-36 154.5 131 55.0
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 7.6e-36 154.1 123 59.3
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.0e-35 153.7 123 60.2
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.3e-35 153.3 125 57.6
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.3e-35 153.3 129 58.9
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.3e-35 153.3 132 56.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 1.7e-35 152.9 131 54.2
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 1.7e-35 152.9 123 59.3
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.2e-35 152.5 131 55.7
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-35 152.5 123 59.3
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 2.2e-35 152.5 131 58.0
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.9e-35 152.1 131 57.3
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 2.9e-35 152.1 123 58.5
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 2.9e-35 152.1 132 56.1
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 3.8e-35 151.8 132 56.8
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.8e-35 151.8 129 55.8
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 5.0e-35 151.4 124 60.5
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 5.0e-35 151.4 123 59.3
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 6.5e-35 151.0 128 57.0
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 8.5e-35 150.6 119 58.0
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 8.5e-35 150.6 131 55.0
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.5e-35 150.6 123 59.3
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 8.5e-35 150.6 131 55.0
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 8.5e-35 150.6 125 56.0
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 8.5e-35 150.6 130 60.8
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 8.5e-35 150.6 125 58.4
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 8.5e-35 150.6 124 61.3
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.1e-34 150.2 123 60.2
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.1e-34 150.2 126 60.3
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 1.4e-34 149.8 126 58.7
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.4e-34 149.8 119 62.2
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.9e-34 149.4 131 54.2
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.9e-34 149.4 123 57.7
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.9e-34 149.4 127 57.5
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 3.2e-34 148.7 126 58.7
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 3.2e-34 148.7 130 57.7
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 4.2e-34 148.3 123 57.7
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.2e-34 148.3 129 57.4
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 4.2e-34 148.3 119 59.7
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 4.2e-34 148.3 123 58.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 5.5e-34 147.9 128 56.2
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 5.5e-34 147.9 129 55.8
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 5.5e-34 147.9 131 55.0
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 5.5e-34 147.9 123 58.5
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 7.2e-34 147.5 120 59.2
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 7.2e-34 147.5 122 58.2
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 7.2e-34 147.5 131 55.0
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 9.3e-34 147.1 125 56.0
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 9.3e-34 147.1 123 58.5
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.3e-34 147.1 123 58.5
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 9.3e-34 147.1 123 58.5
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 9.3e-34 147.1 120 59.2
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 9.3e-34 147.1 131 53.4
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 9.3e-34 147.1 123 59.3
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.2e-33 146.7 123 58.5
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.2e-33 146.7 121 61.2
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 1.2e-33 146.7 121 61.2
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.6e-33 146.4 130 57.7
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.1e-33 146.0 120 60.0
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 2.1e-33 146.0 129 51.9
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.1e-33 146.0 129 56.6
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.1e-33 146.0 126 55.6
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 2.7e-33 145.6 124 55.6
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.7e-33 145.6 131 54.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.7e-33 145.6 123 59.3
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.7e-33 145.6 123 55.3
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 3.6e-33 145.2 129 55.0
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 4.6e-33 144.8 126 58.7
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 6.1e-33 144.4 124 54.8
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 6.1e-33 144.4 126 54.0
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 7.9e-33 144.1 129 54.3
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.0e-32 143.7 126 53.2
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.0e-32 143.7 126 54.8
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.3e-32 142.5 123 56.1
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.1e-31 140.2 121 55.4
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.1e-31 140.2 129 55.0
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.5e-31 139.8 123 56.1
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.5e-31 139.8 120 57.5
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.9e-31 139.4 125 53.6
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.9e-31 139.4 119 56.3
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.9e-31 139.4 125 53.6
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 2.5e-31 139.0 120 56.7
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 3.3e-31 138.7 123 53.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 9.7e-31 137.1 123 52.8
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.7e-30 136.3 123 54.5
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 4.8e-30 134.8 118 55.9
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 4.8e-30 134.8 125 53.6
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 6.3e-30 134.4 126 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 8.2e-30 134.0 123 52.0
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 8.2e-30 134.0 120 54.2
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 1.1e-29 133.7 122 54.1
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.1e-29 133.7 130 55.4
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.8e-29 132.9 143 49.0
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.1e-29 131.7 116 53.4
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 5.3e-29 131.3 117 53.0
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 9.1e-29 130.6 102 62.7
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 5.9e-28 127.9 113 54.0
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 5.9e-28 127.9 118 54.2
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.3e-27 126.7 125 52.0
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.7e-27 126.3 106 55.7
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 1.7e-27 126.3 120 53.3
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.1e-26 123.6 120 50.0
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.4e-26 123.2 120 49.2
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 2.1e-25 119.4 129 46.5
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.7e-25 119.0 100 55.0
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.6e-25 118.6 118 47.5
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 6.1e-25 117.9 113 53.1
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 6.1e-25 117.9 122 50.0
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.0e-24 115.5 137 50.4
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 5.1e-24 114.8 123 46.3
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 5.7e-23 111.3 109 51.4
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.2e-17 93.6 80 56.2
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.6e-17 93.2 70 64.3
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 8.0e-17 90.9 65 61.5
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 1.7e-14 83.2 112 36.6
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.7e-14 83.2 62 56.5
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.1e-13 80.5 54 66.7
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 3.1e-13 79.0 57 61.4
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 9.1e-13 77.4 119 37.0
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.7e-11 73.2 54 63.0
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.7e-11 73.2 65 55.4
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.5e-10 70.1 63 50.8
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.1e-09 66.2 65 49.2
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 8.0e-09 64.3 82 48.8
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.5e-07 60.1 61 49.2
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.5e-07 60.1 61 49.2
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 2.2e-06 56.2 63 49.2
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.8e-06 55.8 63 47.6
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 4.8e-06 55.1 65 46.2


User provided reference genes

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