Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 5.7e-164 580.9 297 100.0
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 2.9e-152 542.0 297 92.9
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 2.5e-151 538.9 299 92.6
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 5.7e-148 527.7 297 88.9
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 9.8e-148 526.9 297 90.6
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 7.7e-145 517.3 297 87.9
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 7.7e-145 517.3 297 87.9
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 7.7e-145 517.3 297 87.9
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 6.5e-144 514.2 297 89.6
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 3.6e-142 508.4 297 86.5
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 6.1e-142 507.7 297 87.5
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 2.0e-140 502.7 297 86.2
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 2.4e-138 495.7 298 83.6
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 8.9e-125 450.7 264 84.5
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 4.4e-116 421.8 302 73.2
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 2.4e-114 416.0 283 74.2
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 3.2e-114 415.6 289 73.4
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 5.4e-114 414.8 278 75.9
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 7.1e-114 414.5 266 77.1
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 9.2e-114 414.1 297 71.0
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 2.7e-113 412.5 281 73.3
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 2.7e-113 412.5 284 72.9
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 3.5e-113 412.1 263 77.6
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 6.0e-113 411.4 264 76.9
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 1.0e-112 410.6 297 70.4
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.3e-112 410.2 281 72.2
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 1.7e-112 409.8 283 73.1
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 6.6e-112 407.9 307 69.7
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 6.6e-112 407.9 300 69.3
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 1.5e-111 406.8 288 71.2
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 1.9e-111 406.4 299 70.9
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 2.5e-111 406.0 283 72.1
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 3.3e-111 405.6 264 75.4
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 4.3e-111 405.2 315 67.0
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 7.3e-111 404.4 297 68.7
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 9.5e-111 404.1 285 71.9
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 1.2e-110 403.7 289 71.3
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 2.8e-110 402.5 315 66.3
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 2.8e-110 402.5 294 70.4
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 2.8e-110 402.5 247 77.7
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 2.8e-110 402.5 262 74.8
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 3.6e-110 402.1 298 69.8
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 4.7e-110 401.7 309 66.7
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 6.2e-110 401.4 302 68.5
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 6.2e-110 401.4 298 68.8
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 8.1e-110 401.0 301 70.8
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 1.1e-109 400.6 288 71.9
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 1.4e-109 400.2 296 68.2
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 1.4e-109 400.2 296 68.2
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 1.8e-109 399.8 264 73.5
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 4.0e-109 398.7 299 68.6
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 5.2e-109 398.3 294 68.4
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 6.8e-109 397.9 301 67.1
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 2.0e-108 396.4 238 79.8
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 7.6e-108 394.4 283 69.3
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 1.3e-107 393.7 275 72.4
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 2.2e-107 392.9 261 74.3
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 8.4e-107 391.0 335 62.4
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 1.1e-106 390.6 253 77.1
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 5.4e-106 388.3 289 67.8
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 1.6e-105 386.7 295 68.8
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 2.7e-105 386.0 290 67.9
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 4.6e-105 385.2 304 63.5
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 4.6e-105 385.2 254 75.6
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 4.6e-105 385.2 250 74.8
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 6.0e-105 384.8 248 75.8
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 3.0e-104 382.5 288 70.5
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 3.9e-104 382.1 230 79.1
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 6.6e-104 381.3 272 70.2
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 1.5e-103 380.2 295 67.5
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 4.3e-103 378.6 273 68.5
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 7.3e-103 377.9 294 66.0
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 1.6e-102 376.7 255 74.9
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 3.6e-102 375.6 228 78.1
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 2.4e-101 372.9 276 67.0
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 3.1e-101 372.5 305 63.3
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 3.1e-101 372.5 237 75.1
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 1.5e-100 370.2 283 65.0
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 9.9e-100 367.5 238 74.4
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 2.4e-98 362.8 239 73.6
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 3.2e-98 362.5 292 64.7
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 9.3e-98 360.9 228 74.1
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 1.0e-96 357.5 234 73.9
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 5.1e-96 355.1 240 75.8
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 5.6e-95 351.7 238 70.2
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 7.3e-95 351.3 249 72.7
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 3.1e-93 345.9 264 68.6
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 5.3e-93 345.1 229 73.4
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 9.0e-93 344.4 306 62.1
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 1.1e-90 337.4 232 70.3
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 4.2e-90 335.5 246 67.5
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 5.6e-87 325.1 246 65.0
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 6.2e-86 321.6 228 69.3
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 1.1e-85 320.9 233 69.1
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 9.6e-79 297.7 201 75.1
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 1.1e-77 294.3 209 71.3
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 2.5e-74 283.1 287 55.4
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 2.5e-74 283.1 198 72.2
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 9.3e-74 281.2 182 73.1
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 1.1e-66 257.7 219 61.2
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 5.0e-59 232.3 143 76.9
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 9.4e-58 228.0 180 66.1
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 1.4e-56 224.2 263 49.0
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 3.3e-55 219.5 196 62.8
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 2.4e-45 186.8 117 77.8
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 1.6e-44 184.1 113 76.1
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 2.0e-44 183.7 115 74.8
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 3.6e-41 172.9 232 42.7
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 4.7e-41 172.6 111 72.1
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 1.0e-32 144.8 221 41.2
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 2.0e-28 130.6 75 78.7
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 3.7e-22 109.8 233 34.8
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 8.0e-17 92.0 63 71.4
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 5.2e-16 89.4 236 31.8
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 3.1e-08 63.5 207 30.4
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 3.1e-08 63.5 43 67.4
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 7.5e-07 58.9 33 69.7


User provided reference genes

Program Settings