Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 6.3e-243 844.0 516 100.0
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 8.1e-182 641.0 528 77.8
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 7.8e-177 624.4 526 74.7
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.3e-176 623.6 529 75.2
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 5.6e-167 591.7 558 68.8
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 4.7e-166 588.6 528 72.3
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 2.4e-165 586.3 528 70.6
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.4e-162 577.0 523 72.1
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.3e-160 570.5 528 72.2
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 1.3e-160 570.5 542 69.0
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 3.9e-160 568.9 526 72.4
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 4.2e-130 469.2 592 59.5
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 8.8e-128 461.5 414 71.7
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 5.3e-101 372.5 557 58.2
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.5e-98 364.4 552 57.1
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.9e-98 364.0 473 61.5
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 2.4e-93 347.1 555 53.7
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 3.1e-93 346.7 549 52.1
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.7e-91 340.9 379 60.9
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 6.6e-91 339.0 554 53.4
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 2.5e-90 337.0 565 52.6
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 4.2e-90 336.3 543 54.3
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 7.2e-90 335.5 532 52.8
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 7.2e-90 335.5 556 52.7
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 2.8e-89 333.6 549 49.9
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 8.0e-89 332.0 549 53.7
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 1.0e-88 331.6 559 52.8
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.0e-88 329.7 576 50.2
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 8.9e-88 328.6 566 53.7
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 8.9e-88 328.6 562 51.6
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 2.0e-87 327.4 554 51.1
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 2.6e-87 327.0 563 49.2
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 1.3e-86 324.7 561 52.4
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 3.7e-86 323.2 563 49.2
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.9e-86 322.8 562 53.7
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 8.3e-86 322.0 555 50.1
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 1.4e-85 321.2 555 49.9
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 4.1e-85 319.7 551 52.6
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.0e-85 318.9 542 53.5
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 1.2e-84 318.2 551 52.3
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.6e-84 317.8 538 53.7
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 2.0e-84 317.4 547 52.5
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 3.5e-84 316.6 559 52.4
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 4.5e-84 316.2 554 49.8
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 1.0e-83 315.1 555 51.7
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.7e-83 314.3 555 52.8
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 2.3e-83 313.9 598 50.2
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 2.9e-83 313.5 558 50.7
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 1.5e-82 311.2 550 52.5
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 1.5e-82 311.2 578 48.1
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 9.5e-82 308.5 542 53.3
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.2e-81 308.1 542 53.1
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.7e-81 306.2 579 49.4
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 6.1e-81 305.8 550 52.5
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 8.0e-81 305.4 558 52.9
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 8.0e-81 305.4 548 50.4
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 2.3e-80 303.9 557 48.1
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 2.3e-80 303.9 554 47.1
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.3e-80 303.9 556 53.4
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.3e-80 303.9 579 49.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.1e-80 303.5 574 50.9
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.0e-79 300.8 546 53.1
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 2.6e-79 300.4 570 51.4
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 4.4e-79 299.7 561 50.1
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 4.4e-79 299.7 560 52.3
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 4.4e-79 299.7 541 48.1
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 5.8e-79 299.3 565 50.6
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 7.5e-79 298.9 557 50.6
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 7.5e-79 298.9 565 50.3
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 9.8e-79 298.5 554 48.4
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.7e-78 297.7 554 50.0
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 2.9e-78 297.0 553 49.2
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 2.9e-78 297.0 566 52.3
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 4.9e-78 296.2 567 49.7
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 8.3e-78 295.4 548 48.0
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 3.2e-77 293.5 567 51.1
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.1e-77 293.1 558 50.7
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 4.1e-77 293.1 547 50.8
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 5.4e-77 292.7 567 48.5
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 7.0e-77 292.4 548 49.1
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 9.2e-77 292.0 555 52.3
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 9.2e-77 292.0 577 45.2
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 6.0e-76 289.3 549 49.4
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 6.0e-76 289.3 529 52.4
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.3e-75 288.1 582 48.6
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 3.0e-75 287.0 556 47.5
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 8.6e-75 285.4 545 52.3
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 8.6e-75 285.4 553 51.0
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 2.5e-74 283.9 556 51.4
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 4.3e-74 283.1 562 46.1
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.2e-73 281.6 572 48.1
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.6e-73 281.2 557 47.9
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 6.2e-73 279.3 543 51.7
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.4e-72 278.1 573 47.3
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.4e-72 278.1 541 52.1
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 3.1e-72 276.9 546 49.6
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.2e-71 275.0 546 48.0
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.2e-70 270.8 557 50.3
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.9e-70 270.4 537 50.8
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.7e-68 263.8 560 48.6
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.6e-68 263.1 567 48.5
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 6.6e-67 259.2 564 48.2
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.6e-65 254.6 555 47.0
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.4e-64 251.5 529 49.5
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 8.9e-64 248.8 544 45.0
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 2.6e-63 247.3 568 47.9
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 2.9e-62 243.8 526 47.5
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 2.1e-60 237.7 552 49.6
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 2.3e-59 234.2 537 47.9
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 3.9e-59 233.4 488 49.8
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.1e-59 233.0 190 72.1
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.7e-57 226.5 166 77.1
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 6.2e-57 226.1 530 45.1
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.4e-56 224.2 170 74.7
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 4.0e-56 223.4 172 75.6
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.7e-54 218.0 600 41.5
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.9e-53 214.5 192 65.1
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 1.6e-52 211.5 481 47.2
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.1e-50 205.3 176 65.9
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 3.3e-50 203.8 598 41.6
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 7.3e-50 202.6 156 72.4
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 3.1e-48 197.2 518 37.6
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 3.1e-48 197.2 473 45.9
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 9.6e-34 149.1 111 76.6
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 5.3e-32 143.3 124 67.7
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.0e-30 139.0 127 65.4
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.8e-30 137.1 491 43.0
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 5.1e-27 126.7 136 62.5
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 2.5e-26 124.4 109 64.2
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 4.8e-25 120.2 234 44.9
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.4e-23 114.0 130 56.9
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 3.4e-23 114.0 110 62.7
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.3e-22 112.1 280 42.9
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.8e-19 101.7 156 42.3
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 8.7e-19 99.4 516 33.5
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.1e-18 99.0 125 48.8
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.3e-18 97.4 116 52.6
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 5.7e-18 96.7 86 62.8
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 8.2e-17 92.8 64 78.1
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 1.7e-14 85.1 57 80.7
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.2e-14 84.7 75 68.0
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 3.0e-11 74.3 57 75.4
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.8e-09 67.8 77 61.0
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.8e-09 67.8 77 61.0
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.8e-09 67.8 86 53.5
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 8.2e-09 66.2 107 52.3
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 1.8e-08 65.1 158 34.2
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 7.7e-07 59.7 85 43.5
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.0e-06 59.3 84 45.2
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 1.3e-06 58.9 84 45.2
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 1.7e-06 58.5 77 53.2
BcaB04g19993 Brassica carinata HOM05D004889 ORTHO05D005478 2.2e-06 58.2 64 59.4
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.8e-06 57.4 48 66.7
Carub.0005s1400 Capsella rubella HOM05D004889 ORTHO05D016590 6.5e-06 56.6 100 50.0


User provided reference genes

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