Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2285 Capsella rubella HOM05D003765 ORTHO05D004561 0.0e+00 1332.8 713 100.0
AL8G38980 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 0.0e+00 1078.2 725 84.0
CARHR275960 Cardamine hirsuta HOM05D003765 ORTHO05D004561 3.2e-290 1001.5 728 79.0
Sp2g25350 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.1e-285 986.5 736 78.4
Thhalv10003732m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 9.1e-285 983.4 732 77.3
AT5G62170 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.2e-284 983.0 612 88.4
A06p28880 Brassica napus HOM05D003765 ORTHO05D004561 4.7e-273 944.5 729 76.4
BraA06t25836Z Brassica rapa HOM05D003765 ORTHO05D004561 6.8e-272 940.6 732 76.5
BolC3t18736H Brassica oleracea HOM05D003765 ORTHO05D004561 2.6e-271 938.7 727 75.8
C03p64740 Brassica napus HOM05D003765 ORTHO05D004561 1.1e-234 817.0 619 75.3
Aa31LG11G1410 Aethionema arabicum HOM05D003765 ORTHO05D004561 2.1e-188 663.3 740 61.2
BcaB02g09632 Brassica carinata HOM05D003765 ORTHO05D004561 2.7e-167 593.2 677 58.5
THA.LOC104824843 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 4.7e-156 555.8 674 53.6
THA.LOC104818268 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.7e-151 540.0 671 54.4
BolC9t53753H Brassica oleracea HOM05D003765 ORTHO05D004561 1.1e-107 395.2 675 44.4
C09p08430 Brassica napus HOM05D003765 ORTHO05D004561 8.4e-105 385.6 693 43.6
BcaNung01408 Brassica carinata HOM05D003765 ORTHO05D004561 3.9e-102 376.7 720 42.9
BraA09t36408Z Brassica rapa HOM05D003765 ORTHO05D004561 2.8e-100 370.5 675 42.7
A09p07540 Brassica napus HOM05D003765 ORTHO05D004561 2.9e-97 360.5 693 41.4
BcaNung01409 Brassica carinata HOM05D003765 ORTHO05D004561 5.0e-97 359.8 674 42.7
BcaC04g23427 Brassica carinata HOM05D003765 ORTHO05D004561 1.4e-96 358.2 626 43.9
Thecc.03G167000 Theobroma cacao HOM05D003765 ORTHO05D004561 3.9e-94 350.1 778 39.8
Cpa.g.sc4.199 Carica papaya HOM05D003765 ORTHO05D004561 4.5e-90 336.7 746 39.5
Manes.06G141500 Manihot esculenta HOM05D003765 ORTHO05D004561 1.1e-88 332.0 764 40.3
Gorai.008G281700 Gossypium raimondii HOM05D003765 ORTHO05D004561 1.2e-87 328.6 728 38.9
Duzib084G1451 Durio zibethinus HOM05D003765 ORTHO05D004561 6.1e-87 326.2 769 38.8
FAN06G1616 Fragaria x ananassa HOM05D003765 ORTHO05D004561 7.4e-85 319.3 673 39.1
FAN06G4109 Fragaria x ananassa HOM05D003765 ORTHO05D004561 9.7e-85 318.9 673 39.1
FvH4_7g28730 Fragaria vesca HOM05D003765 ORTHO05D004561 2.2e-84 317.8 673 39.1
Potri.015G135200 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.8e-83 314.7 723 37.8
RcHm_v2.0_Chr1g0376241 Rosa chinensis HOM05D003765 ORTHO05D004561 2.4e-83 314.3 681 38.2
FAN10G2022 Fragaria x ananassa HOM05D003765 ORTHO05D004561 4.1e-83 313.5 666 39.0
FAN03G1770 Fragaria x ananassa HOM05D003765 ORTHO05D004561 9.1e-83 312.4 670 39.0
FAN03G1055 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.5e-82 311.6 672 39.0
Gohir.A12G262100 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.5e-82 311.6 724 38.3
Potri.012G132900 Populus trichocarpa HOM05D003765 ORTHO05D004561 1.7e-81 308.1 730 37.9
Sabra15G0147100 Salix brachista HOM05D003765 ORTHO05D004561 2.9e-81 307.4 734 37.1
Ciclev10004387m.g Citrus clementina HOM05D003765 ORTHO05D004561 5.0e-81 306.6 750 37.9
Atru.chr1.559 Acer truncatum HOM05D003765 ORTHO05D004561 3.6e-79 300.4 806 34.6
Actinidia13542 Actinidia chinensis HOM05D003765 ORTHO05D004561 1.0e-78 298.9 677 37.8
Gohir.D12G262800 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.1e-77 295.4 619 40.9
Lj1A988T34 Lonicera japonica HOM05D003765 ORTHO05D004561 9.7e-77 292.4 721 36.3
FAN01G1737 Fragaria x ananassa HOM05D003765 ORTHO05D004561 1.6e-74 285.0 712 36.5
Peaxi162Scf00192g00516 Petunia axillaris HOM05D003765 ORTHO05D004561 7.7e-74 282.7 740 35.9
Manes.14G030900 Manihot esculenta HOM05D003765 ORTHO05D004561 1.0e-73 282.3 773 35.3
Prupe.2G287400 Prunus persica HOM05D003765 ORTHO05D004561 2.9e-73 280.8 713 36.7
Duzib205G1056 Durio zibethinus HOM05D003765 ORTHO05D004561 2.1e-71 274.6 647 39.4
Gorai.006G196800 Gossypium raimondii HOM05D003765 ORTHO05D004561 2.7e-71 274.2 707 34.1
Gohir.D09G174700 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.8e-70 271.6 708 33.9
MD01G1193200 Malus domestica HOM05D003765 ORTHO05D004561 1.8e-70 271.6 717 34.3
Sabra12G0100000 Salix brachista HOM05D003765 ORTHO05D004561 3.0e-70 270.8 722 36.3
MD00G1004300 Malus domestica HOM05D003765 ORTHO05D004561 3.3e-69 267.3 718 35.4
Haze_13790 Corylus avellana HOM05D003765 ORTHO05D004561 5.7e-69 266.5 669 37.2
Gohir.A09G179400 Gossypium hirsutum HOM05D003765 ORTHO05D004561 1.3e-68 265.4 710 33.7
Nitab4.5_0000599g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 3.1e-67 260.8 711 34.3
CiPaw.03G100300 Carya illinoinensis HOM05D003765 ORTHO05D004561 1.6e-66 258.5 728 34.9
Eucgr.A02847 Eucalyptus grandis HOM05D003765 ORTHO05D004561 2.0e-66 258.1 715 35.5
Nitab4.5_0004911g0030 Nicotiana tabacum HOM05D003765 ORTHO05D004561 7.7e-66 256.1 724 34.5
Cc02_g03580 Coffea canephora HOM05D003765 ORTHO05D004561 1.0e-65 255.8 778 33.8
TAR629G2057 Trochodendron aralioides HOM05D003765 ORTHO05D004561 2.2e-65 254.6 662 34.4
PGSC0003DMG400024251 Solanum tuberosum HOM05D003765 ORTHO05D004561 3.8e-65 253.8 727 34.3
CANSAT21G2021 Cannabis sativa HOM05D003765 ORTHO05D004561 2.5e-64 251.1 791 33.0
Aa31LG6G8690 Aethionema arabicum HOM05D003765 ORTHO05D004561 9.4e-64 249.2 334 59.0
Nn1g01288 Nelumbo nucifera HOM05D003765 ORTHO05D004561 1.2e-63 248.8 772 33.2
Sopen03g002830 Solanum pennellii HOM05D003765 ORTHO05D004561 8.0e-63 246.1 729 35.8
Peaxi162Scf00557g00216 Petunia axillaris HOM05D003765 ORTHO05D004561 2.3e-62 244.6 689 34.4
SalBow2G1841 Salvia bowleyana HOM05D003765 ORTHO05D004561 5.2e-62 243.4 662 34.7
Oeu030141.1 Olea europaea HOM05D003765 ORTHO05D004561 6.8e-62 243.0 669 37.8
Phvul.004G123200 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 1.2e-61 242.3 716 34.9
PGR042G0955 Punica granatum HOM05D003765 ORTHO05D004561 2.6e-61 241.1 710 36.1
Solyc03g006840.4 Solanum lycopersicum HOM05D003765 ORTHO05D004561 3.7e-60 237.3 733 34.7
MSTRG.8430 Avicennia marina HOM05D003765 ORTHO05D004561 9.1e-59 232.6 688 34.3
Glyma.09G148700 Glycine max HOM05D003765 ORTHO05D004561 1.2e-58 232.3 732 34.7
Oeu030257.1 Olea europaea HOM05D003765 ORTHO05D004561 1.3e-57 228.8 704 33.9
Lsat_1_v5_gn_9_53700 Lactuca sativa HOM05D003765 ORTHO05D004561 1.7e-57 228.4 691 33.9
Aqoxy7G00497 Aquilegia oxysepala HOM05D003765 ORTHO05D004561 3.8e-57 227.3 736 33.6
Migut.F01159 Erythranthe guttata HOM05D003765 ORTHO05D004561 1.9e-56 224.9 701 34.2
vmacro06738 Vaccinium macrocarpon HOM05D003765 ORTHO05D004561 1.9e-56 224.9 711 34.7
GSVIVG01018447001 Vitis vinifera HOM05D003765 ORTHO05D004561 2.5e-56 224.6 716 34.8
Glyma.20G154100 Glycine max HOM05D003765 ORTHO05D004561 7.2e-56 223.0 728 33.2
DCAR_014604 Daucus carota HOM05D003765 ORTHO05D004561 1.2e-55 222.2 686 34.0
Glyma.10G240600 Glycine max HOM05D003765 ORTHO05D004561 1.2e-55 222.2 737 32.6
Lsat_1_v5_gn_2_130181 Lactuca sativa HOM05D003765 ORTHO05D004561 1.2e-55 222.2 702 32.6
Nitab4.5_0000205g0170 Nicotiana tabacum HOM05D003765 ORTHO05D004561 1.6e-55 221.9 712 33.8
EL10Ac3g05741 Beta vulgaris HOM05D003765 ORTHO05D004561 3.6e-55 220.7 679 32.3
MSTRG.114 Avicennia marina HOM05D003765 ORTHO05D004561 6.1e-55 219.9 789 31.7
Glyma.16G200400 Glycine max HOM05D003765 ORTHO05D004561 6.1e-55 219.9 723 33.1
PSO478G3102 Papaver somniferum HOM05D003765 ORTHO05D004561 1.4e-54 218.8 707 32.0
Lalb_Chr03g0034171 Lupinus albus HOM05D003765 ORTHO05D004561 2.3e-54 218.0 683 34.7
THA.LOC104798744 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 2.3e-54 218.0 763 33.9
Nn6g34319 Nelumbo nucifera HOM05D003765 ORTHO05D004561 8.9e-54 216.1 810 31.7
Rhsim03G0174800 Rhododendron simsii HOM05D003765 ORTHO05D004561 7.5e-53 213.0 623 35.5
Medtr1g101910 Medicago truncatula HOM05D003765 ORTHO05D004561 2.2e-52 211.5 718 32.5
Lj2g0000316 Lotus japonicus HOM05D003765 ORTHO05D004561 8.3e-52 209.5 749 32.6
TPR.G21305 Trifolium pratense HOM05D003765 ORTHO05D004561 8.3e-52 209.5 673 33.1
THA.LOC104811493 Tarenaya hassleriana HOM05D003765 ORTHO05D004561 1.1e-51 209.1 666 32.9
PSO782G0143 Papaver somniferum HOM05D003765 ORTHO05D004561 1.8e-51 208.4 699 32.6
Lj5g0012460 Lotus japonicus HOM05D003765 ORTHO05D004561 2.7e-50 204.5 705 33.5
Lalb_Chr21g0304901 Lupinus albus HOM05D003765 ORTHO05D004561 5.6e-48 196.8 701 34.0
Phvul.007G065400 Phaseolus vulgaris HOM05D003765 ORTHO05D004561 5.6e-48 196.8 698 34.0
CDE04G3755 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 7.3e-48 196.4 716 30.3
Ah.07g208800 Amaranthus hybridus HOM05D003765 ORTHO05D004561 9.5e-48 196.1 674 31.3
TPR.G17415 Trifolium pratense HOM05D003765 ORTHO05D004561 8.9e-46 189.5 712 31.2
COL.COLO4_14229 Corchorus olitorius HOM05D003765 ORTHO05D004561 1.2e-45 189.1 754 31.8
HanXRQChr14g0461811 Helianthus annuus HOM05D003765 ORTHO05D004561 2.6e-45 188.0 693 32.2
AUR62016059 Chenopodium quinoa HOM05D003765 ORTHO05D004561 3.7e-44 184.1 623 31.9
MBI04_g06623_MAGBIO Magnolia biondii HOM05D003765 ORTHO05D004561 4.9e-44 183.7 576 30.6
DCAR_009410 Daucus carota HOM05D003765 ORTHO05D004561 4.1e-43 180.6 649 33.7
Lalb_Chr02g0140881 Lupinus albus HOM05D003765 ORTHO05D004561 1.6e-42 178.7 719 32.3
ECA238G0747 Erigeron canadensis HOM05D003765 ORTHO05D004561 3.5e-42 177.6 749 31.1
CDE07G1851 Ceratophyllum demersum HOM05D003765 ORTHO05D004561 6.0e-42 176.8 703 28.9
Sc19g0001750 Simmondsia chinensis HOM05D003765 ORTHO05D004561 7.8e-42 176.4 665 29.9
Sp6g14100 Schrenkiella parvula HOM05D003765 ORTHO05D004561 1.3e-41 175.6 676 31.1
Thhalv10012958m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 3.0e-41 174.5 658 31.5
VMungo0720G0810 Vigna mungo HOM05D003765 ORTHO05D004561 3.0e-41 174.5 703 30.9
Psat1g111440 Pisum sativum HOM05D003765 ORTHO05D004561 3.9e-41 174.1 695 29.8
ClCG05G007700 Citrullus lanatus HOM05D003765 ORTHO05D004561 8.6e-41 172.9 679 30.9
Medtr6g089530 Medicago truncatula HOM05D003765 ORTHO05D004561 1.9e-40 171.8 621 32.0
Dinv35140 Davidia involucrata HOM05D003765 ORTHO05D004561 6.2e-39 166.8 472 38.1
AT5G51850 Arabidopsis thaliana HOM05D003765 ORTHO05D004561 1.4e-38 165.6 662 31.4
ECA232G3914 Erigeron canadensis HOM05D003765 ORTHO05D004561 2.3e-38 164.9 649 30.0
Hma1.2p1_0488F.1_g163950 Hydrangea macrophylla HOM05D003765 ORTHO05D004561 2.3e-38 164.9 616 33.1
Ca_10812_v3 Cicer arietinum L. HOM05D003765 ORTHO05D004561 8.9e-38 162.9 688 29.7
AL8G26150 Arabidopsis lyrata HOM05D003765 ORTHO05D004561 1.5e-37 162.2 638 29.9
CARHR264740 Cardamine hirsuta HOM05D003765 ORTHO05D004561 2.0e-37 161.8 622 30.9
arahy.Tifrunner.gnm1.ann1.G7HECD Arachis hypogaea HOM05D003765 ORTHO05D004561 4.1e-35 154.1 674 30.1
Aa31LG3G8290 Aethionema arabicum HOM05D003765 ORTHO05D004561 7.0e-35 153.3 699 28.0
arahy.Tifrunner.gnm1.ann1.S2H83J Arachis hypogaea HOM05D003765 ORTHO05D004561 4.6e-34 150.6 716 30.0
CsaV3_3G016640 Cucumis sativus L. HOM05D003765 ORTHO05D004561 8.6e-33 146.4 660 29.5
Sed0025435 Sechium edule HOM05D003765 ORTHO05D004561 8.6e-33 146.4 670 27.6
Psat6g201640 Pisum sativum HOM05D003765 ORTHO05D004561 1.9e-32 145.2 694 29.3
Dinv28506 Davidia involucrata HOM05D003765 ORTHO05D004561 4.3e-32 144.1 444 36.9
MELO3C006859.2 Cucumis melo HOM05D003765 ORTHO05D004561 2.6e-29 134.8 656 28.5
SGA_v2.0_scaffold113G31787 Striga asiatica HOM05D003765 ORTHO05D004561 9.9e-29 132.9 662 30.2
SalBow4G0450 Salvia bowleyana HOM05D003765 ORTHO05D004561 1.7e-28 132.1 642 28.2
Migut.F00398 Erythranthe guttata HOM05D003765 ORTHO05D004561 2.7e-26 124.8 283 34.3
Dinv28507 Davidia involucrata HOM05D003765 ORTHO05D004561 2.3e-25 121.7 121 47.9
ATR0661G439 Amborella trichopoda HOM05D003765 ORTHO05D004561 1.1e-24 119.4 788 24.9
A10p09680 Brassica napus HOM05D003765 ORTHO05D004561 8.9e-22 109.8 369 32.2
BraA10t43049Z Brassica rapa HOM05D003765 ORTHO05D004561 4.4e-21 107.5 369 32.0
unitig_22.g5225 Utricularia gibba HOM05D003765 ORTHO05D004561 2.2e-20 105.1 224 33.5
VMungo0464G1637 Vigna mungo HOM05D003765 ORTHO05D004561 8.4e-20 103.2 266 38.3
Thhalv10025080m.g Eutrema salsugineum HOM05D003765 ORTHO05D004561 1.9e-19 102.1 334 33.8
C09p41340 Brassica napus HOM05D003765 ORTHO05D004561 2.4e-19 101.7 368 32.3
BolC9t57009H Brassica oleracea HOM05D003765 ORTHO05D004561 2.4e-19 101.7 368 32.3
Carub.0008s1189 Capsella rubella HOM05D003765 ORTHO05D004561 3.2e-19 101.3 549 28.2
VMungo0464G2043 Vigna mungo HOM05D003765 ORTHO05D004561 7.1e-19 100.1 216 34.3
BcaB08g35538 Brassica carinata HOM05D003765 ORTHO05D004561 2.1e-18 98.6 364 31.9
SEGI_17592 Sequoiadendron giganteum HOM05D003765 ORTHO05D004561 6.0e-18 97.1 181 34.8
Sed0026899 Sechium edule HOM05D003765 ORTHO05D004561 2.1e-15 88.6 605 27.8
unitig_37.g11944 Utricularia gibba HOM05D003765 ORTHO05D004561 6.2e-15 87.0 232 37.1
Sp7g23450 Schrenkiella parvula HOM05D003765 ORTHO05D004561 8.1e-15 86.7 385 29.1
A08p21190 Brassica napus HOM05D003765 ORTHO05D004561 4.0e-14 84.3 354 30.2
BcaC07g38188 Brassica carinata HOM05D003765 ORTHO05D004561 6.9e-14 83.6 368 28.8
BraA08t34069Z Brassica rapa HOM05D003765 ORTHO05D004561 1.5e-13 82.4 354 29.9
HanXRQChr15g0486221 Helianthus annuus HOM05D003765 ORTHO05D004561 1.5e-13 82.4 407 29.2
BolC8t48608H Brassica oleracea HOM05D003765 ORTHO05D004561 2.0e-13 82.0 375 28.8
BcaB03g12466 Brassica carinata HOM05D003765 ORTHO05D004561 4.4e-13 80.9 356 30.1
AUR62021267 Chenopodium quinoa HOM05D003765 ORTHO05D004561 1.3e-12 79.3 373 30.0
arahy.Tifrunner.gnm1.ann1.3X1084 Arachis hypogaea HOM05D003765 ORTHO05D004561 2.2e-12 78.6 744 25.8
Lalb_Chr19g0131141 Lupinus albus HOM05D003765 ORTHO05D004561 6.4e-12 77.0 110 41.8
Dinv40025 Davidia involucrata HOM05D003765 ORTHO05D000169 1.9e-11 75.5 188 41.0
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 4.2e-11 74.3 172 27.9
arahy.Tifrunner.gnm1.ann1.XAW92V Arachis hypogaea HOM05D003765 ORTHO05D004561 1.2e-10 72.8 186 31.7
AT4G25430 Arabidopsis thaliana HOM05D003765 ORTHO05D023707 1.6e-10 72.4 341 30.5
ClCG01G005340 Citrullus lanatus HOM05D003765 ORTHO05D004561 3.0e-09 68.2 637 24.8
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 3.3e-08 64.7 192 26.0
BcaC03g18556 Brassica carinata HOM05D001693 ORTHO05D001588 5.6e-08 63.9 183 29.5
HPP92_022139 Vanilla planifolia HOM05D003765 ORTHO05D004561 1.6e-07 62.4 680 23.7
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 2.1e-07 62.0 177 27.7
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 6.2e-07 60.5 171 24.0
A03p32820 Brassica napus HOM05D001693 ORTHO05D001588 8.1e-07 60.1 174 28.7
BraA03t12452Z Brassica rapa HOM05D001693 ORTHO05D001588 8.1e-07 60.1 174 28.7
CsaV3_5G005590 Cucumis sativus L. HOM05D003765 ORTHO05D004561 8.1e-07 60.1 315 27.9
Mapoly0151s0019 Marchantia polymorpha HOM05D002515 ORTHO05D002722 8.1e-07 60.1 221 25.3
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 1.4e-06 59.3 183 26.2
BolC3t16259H Brassica oleracea HOM05D001693 ORTHO05D001588 4.0e-06 57.8 176 29.5
Oeu044881.3 Olea europaea HOM05D001693 ORTHO05D001588 6.9e-06 57.0 177 29.4


User provided reference genes

Program Settings