Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2281 Capsella rubella HOM05D007174 ORTHO05D009061 2.7e-132 475.3 242 100.0
AT5G62140 Arabidopsis thaliana HOM05D007174 ORTHO05D009061 2.0e-106 389.4 242 81.0
AL8G38920 Arabidopsis lyrata HOM05D007174 ORTHO05D009061 1.9e-104 382.9 242 81.8
CARHR275910 Cardamine hirsuta HOM05D007174 ORTHO05D009061 1.9e-104 382.9 240 82.5
Thhalv10004841m.g Eutrema salsugineum HOM05D007174 ORTHO05D009061 1.7e-102 376.3 243 83.1
BolC2t12246H Brassica oleracea HOM05D007174 ORTHO05D009061 1.2e-95 353.6 243 79.0
BcaC03g18123 Brassica carinata HOM05D007174 ORTHO05D009061 4.6e-95 351.7 243 78.6
A02p42000 Brassica napus HOM05D007174 ORTHO05D009061 4.6e-95 351.7 243 79.0
BraA02t09135Z Brassica rapa HOM05D007174 ORTHO05D009061 4.6e-95 351.7 243 79.0
Sp2g25310 Schrenkiella parvula HOM05D007174 ORTHO05D009061 1.3e-94 350.1 249 78.3
BcaB07g29797 Brassica carinata HOM05D007174 ORTHO05D009061 2.3e-94 349.4 241 77.2
THA.LOC104826810 Tarenaya hassleriana HOM05D007174 ORTHO05D009061 7.6e-74 281.2 240 65.8
QL09p015458 Quercus lobata HOM05D007174 ORTHO05D009061 2.5e-64 249.6 221 60.2
Potri.012G134500 Populus trichocarpa HOM05D007174 ORTHO05D009061 1.2e-63 247.3 223 60.1
Glyma.16G199500 Glycine max HOM05D007174 ORTHO05D009061 2.1e-63 246.5 246 55.7
Gorai.008G280800 Gossypium raimondii HOM05D007174 ORTHO05D009061 3.5e-63 245.7 198 64.6
Thecc.03G169500 Theobroma cacao HOM05D007174 ORTHO05D009061 4.6e-63 245.4 195 62.6
Ciclev10005753m.g Citrus clementina HOM05D007174 ORTHO05D009061 6.0e-63 245.0 194 64.4
Cpa.g.sc3.335 Carica papaya HOM05D007174 ORTHO05D009061 7.9e-63 244.6 210 60.5
arahy.Tifrunner.gnm1.ann1.CGP099 Arachis hypogaea HOM05D007174 ORTHO05D009061 1.0e-62 244.2 223 57.8
arahy.Tifrunner.gnm1.ann1.AW02WS Arachis hypogaea HOM05D007174 ORTHO05D009061 1.8e-62 243.4 225 58.7
Gohir.A12G261100 Gossypium hirsutum HOM05D007174 ORTHO05D009061 1.8e-62 243.4 198 64.1
Sabra12G0101100 Salix brachista HOM05D007174 ORTHO05D009061 3.0e-62 242.7 223 59.6
Dinv35170 Davidia involucrata HOM05D007174 ORTHO05D009061 3.9e-62 242.3 213 58.7
MSTRG.27141 Avicennia marina HOM05D007174 ORTHO05D009061 1.1e-61 240.7 214 60.3
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 5.7e-61 238.4 194 61.9
Manes.14G029900 Manihot esculenta HOM05D007174 ORTHO05D009061 5.7e-61 238.4 220 57.7
Nn1g01328 Nelumbo nucifera HOM05D007174 ORTHO05D009061 5.7e-61 238.4 233 54.9
MD01G1195800 Malus domestica HOM05D007174 ORTHO05D009061 9.6e-61 237.7 237 53.6
CANSAT21G1580 Cannabis sativa HOM05D007174 ORTHO05D009061 1.6e-60 236.9 203 58.6
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 1.6e-60 236.9 202 60.9
MELO3C006867.2 Cucumis melo HOM05D007174 ORTHO05D009061 1.6e-60 236.9 202 59.4
FvH4_7g28911 Fragaria vesca HOM05D007174 ORTHO05D009061 1.6e-60 236.9 194 61.9
CsaV3_3G016740 Cucumis sativus L. HOM05D007174 ORTHO05D009061 2.8e-60 236.1 195 60.0
Prupe.2G289100 Prunus persica HOM05D007174 ORTHO05D009061 2.8e-60 236.1 235 53.6
CSS0029278 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 3.7e-60 235.7 227 55.5
Glyma.09G147500 Glycine max HOM05D007174 ORTHO05D009061 3.7e-60 235.7 236 54.7
CiPaw.04G068400 Carya illinoinensis HOM05D007174 ORTHO05D009061 4.8e-60 235.3 212 59.0
Phvul.004G122400 Phaseolus vulgaris HOM05D007174 ORTHO05D009061 4.8e-60 235.3 211 58.8
Lj2g0011010 Lotus japonicus HOM05D007174 ORTHO05D009061 6.2e-60 235.0 242 53.7
Sed0014335 Sechium edule HOM05D002642 ORTHO05D002834 6.2e-60 235.0 225 55.6
Duzib205G1938 Durio zibethinus HOM05D007174 ORTHO05D009061 1.1e-59 234.2 227 55.1
TAR374G0585 Trochodendron aralioides HOM05D007174 ORTHO05D009061 1.4e-59 233.8 204 60.8
GSVIVG01010637001 Vitis vinifera HOM05D007174 ORTHO05D009061 2.4e-59 233.0 196 61.2
MBI04_g40843_MAGBIO Magnolia biondii HOM05D007174 ORTHO05D009061 3.1e-59 232.6 242 53.3
Lalb_Chr19g0131081 Lupinus albus HOM05D007174 ORTHO05D009061 4.1e-59 232.3 238 54.6
VMungo0464G0116 Vigna mungo HOM05D007174 ORTHO05D009061 5.3e-59 231.9 189 62.4
ClCG05G007760 Citrullus lanatus HOM05D002642 ORTHO05D002834 6.9e-59 231.5 189 60.8
Rhsim09G0195900 Rhododendron simsii HOM05D007174 ORTHO05D009061 1.2e-58 230.7 237 54.0
Lj6g0017578 Lotus japonicus HOM05D007174 ORTHO05D009061 1.5e-58 230.3 242 52.9
Lj1A990G55 Lonicera japonica HOM05D007174 ORTHO05D009061 2.0e-58 229.9 187 63.1
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 2.6e-58 229.6 231 55.4
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.6e-58 229.6 194 59.3
CSS0030546 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 5.8e-58 228.4 222 55.9
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 7.6e-58 228.0 218 54.1
Medtr6g465290 Medicago truncatula HOM05D007174 ORTHO05D009061 1.3e-57 227.3 211 57.3
CSS0008795 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 1.7e-57 226.9 227 54.2
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 1.7e-57 226.9 216 55.1
TPR.G9185 Trifolium pratense HOM05D007174 ORTHO05D009061 2.9e-57 226.1 211 56.9
Psat1g105240 Pisum sativum HOM05D007174 ORTHO05D009061 3.8e-57 225.7 232 53.0
Atru.chr1.537 Acer truncatum HOM05D007174 ORTHO05D009061 5.0e-57 225.3 185 62.2
vmacro09863 Vaccinium macrocarpon HOM05D007174 ORTHO05D009061 6.5e-57 224.9 236 51.7
Migut.F00385 Erythranthe guttata HOM05D007174 ORTHO05D009061 1.1e-56 224.2 189 60.8
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.4e-56 223.8 194 58.2
SalBow4G1508 Salvia bowleyana HOM05D007174 ORTHO05D009061 2.5e-56 223.0 220 58.2
Eucgr.K00215 Eucalyptus grandis HOM05D007174 ORTHO05D009061 5.5e-56 221.9 218 56.0
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.2e-55 220.7 194 58.2
Aqoxy7G00468 Aquilegia oxysepala HOM05D007174 ORTHO05D009061 1.6e-55 220.3 201 55.7
TWI23G0481 Tripterygium wilfordii HOM05D007174 ORTHO05D009061 3.5e-55 219.2 215 54.0
Lsat_1_v5_gn_9_53840 Lactuca sativa HOM05D007174 ORTHO05D009061 4.6e-55 218.8 217 53.9
Nitab4.5_0008764g0010 Nicotiana tabacum HOM05D007174 ORTHO05D009061 4.6e-55 218.8 230 51.3
RcHm_v2.0_Chr1g0376581 Rosa chinensis HOM05D007174 ORTHO05D009061 4.6e-55 218.8 189 57.7
PGR142G4376 Punica granatum HOM05D007174 ORTHO05D009061 6.1e-55 218.4 200 57.5
Sopen03g005220 Solanum pennellii HOM05D007174 ORTHO05D009061 1.0e-54 217.6 221 51.1
Haze_13772 Corylus avellana HOM05D007174 ORTHO05D009061 1.3e-54 217.2 195 56.9
Nitab4.5_0000832g0170 Nicotiana tabacum HOM05D007174 ORTHO05D009061 1.8e-54 216.9 230 50.9
CAN.G548.22 Capsicum annuum HOM05D007174 ORTHO05D009061 3.0e-54 216.1 221 51.1
AUR62016040 Chenopodium quinoa HOM05D007174 ORTHO05D009061 6.7e-54 214.9 229 52.0
EL10Ac3g05680 Beta vulgaris HOM05D007174 ORTHO05D009061 1.5e-53 213.8 188 58.0
ATR0757G135 Amborella trichopoda HOM05D007174 ORTHO05D009061 2.5e-53 213.0 235 49.8
Cc02_g03460 Coffea canephora HOM05D007174 ORTHO05D009061 3.3e-53 212.6 199 53.8
PGSC0003DMG400014262 Solanum tuberosum HOM05D007174 ORTHO05D009061 3.3e-53 212.6 227 50.7
DCAR_018153 Daucus carota HOM05D007174 ORTHO05D009061 5.7e-53 211.8 248 48.4
Peaxi162Scf00648g00220 Petunia axillaris HOM05D007174 ORTHO05D009061 1.3e-52 210.7 226 50.9
Zm00001eb187200 Zea mays HOM05D007174 ORTHO05D009061 8.2e-52 208.0 185 56.8
arahy.Tifrunner.gnm1.ann1.09T8EW Arachis hypogaea HOM05D007174 ORTHO05D009061 3.1e-51 206.1 185 58.4
Os02g0677600 Oryza sativa ssp. japonica HOM05D007174 ORTHO05D009061 2.6e-50 203.0 188 56.4
CSS0030220 Camellia sinensis var. sinensis HOM05D007174 ORTHO05D009061 3.8e-49 199.1 222 52.3
Actinidia03101 Actinidia chinensis HOM05D007174 ORTHO05D009061 5.0e-49 198.7 184 56.0
SGA_v2.0_scaffold2G01087 Striga asiatica HOM05D007174 ORTHO05D009061 6.5e-49 198.4 230 53.5
Sc25g0000350 Simmondsia chinensis HOM05D007174 ORTHO05D009061 2.1e-47 193.4 191 53.9
arahy.Tifrunner.gnm1.ann1.JY00AE Arachis hypogaea HOM05D007174 ORTHO05D009061 1.5e-45 187.2 170 59.4
SEGI_06842 Sequoiadendron giganteum HOM05D007174 ORTHO05D009061 4.8e-44 182.2 181 51.9
Pp3c13_6960 Physcomitrium patens HOM05D007174 ORTHO05D009061 2.4e-43 179.9 183 49.7
Oeu030133.1 Olea europaea HOM05D007174 ORTHO05D009061 1.2e-42 177.6 139 62.6
Mapoly0145s0018 Marchantia polymorpha HOM05D007174 ORTHO05D009061 1.5e-42 177.2 200 46.5
ECA232G4749 Erigeron canadensis HOM05D007174 ORTHO05D009061 2.2e-41 173.3 142 59.9
SMO137G0111 Selaginella moellendorffii HOM05D007174 ORTHO05D009061 4.7e-39 165.6 185 48.1
Sc13g0008390 Simmondsia chinensis HOM05D007174 ORTHO05D009061 2.6e-37 159.8 183 48.1
unitig_747.g21761 Utricularia gibba HOM05D007174 ORTHO05D009061 4.4e-37 159.1 203 45.3
AagrBONN_evm.TU.Sc2ySwM_228.5753 Anthoceros agrestis HOM05D007174 ORTHO05D009061 1.7e-36 157.1 169 45.0
Gohir.D12G262000 Gossypium hirsutum HOM05D007174 ORTHO05D009061 2.8e-36 156.4 198 46.0
CBR_g53539 Chara braunii HOM05D007174 ORTHO05D009061 6.3e-36 155.2 169 47.3
Pp3c4_22170 Physcomitrium patens HOM05D007174 ORTHO05D009061 6.3e-36 155.2 196 42.9
EL10Ac3g05682 Beta vulgaris HOM05D007174 ORTHO05D009061 1.2e-34 151.0 225 41.3
arahy.Tifrunner.gnm1.ann1.U0QS20 Arachis hypogaea HOM05D007174 ORTHO05D009061 2.2e-28 130.2 175 45.7
Cre01.g019600 Chlamydomonas reinhardtii HOM05D007174 ORTHO05D009061 9.1e-27 124.8 176 40.9
Sc13g0008380 Simmondsia chinensis HOM05D007174 ORTHO05D009061 2.0e-26 123.6 237 33.8
Aa31LG11G1430 Aethionema arabicum HOM05D007174 ORTHO05D009061 4.2e-24 115.9 67 82.1
HanXRQChr15g0482681 Helianthus annuus HOM05D007174 ORTHO05D009061 6.1e-23 112.1 135 48.1
Solyc03g026330.4 Solanum lycopersicum HOM05D007174 ORTHO05D009061 1.2e-21 107.8 130 45.4
AUR62021246 Chenopodium quinoa HOM05D007174 ORTHO05D009061 2.6e-21 106.7 89 57.3
arahy.Tifrunner.gnm1.ann1.BIF85U Arachis hypogaea HOM05D007174 ORTHO05D009061 1.7e-17 94.0 83 53.0
MCO06G097 Micromonas commoda HOM05D007174 ORTHO05D009061 2.9e-17 93.2 212 33.0
CDE01G0613 Ceratophyllum demersum HOM05D007174 ORTHO05D009061 9.4e-16 88.2 130 38.5
Pp3c26_1960 Physcomitrium patens HOM05D007174 ORTHO05D009061 1.2e-13 81.3 99 42.4
SEGI_30770 Sequoiadendron giganteum HOM05D000501 ORTHO05D009061 3.1e-11 73.2 77 51.9
C03p64800 Brassica napus HOM05D014866 ORTHO05D022047 2.9e-09 66.6 51 64.7
BolC3t18743H Brassica oleracea HOM05D014866 ORTHO05D022047 2.9e-09 66.6 51 64.7
BraA06t25829Z Brassica rapa HOM05D014866 ORTHO05D022047 3.3e-08 63.2 105 42.9


User provided reference genes

Program Settings