Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 4.5e-46 187.6 95 100.0
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 3.6e-43 177.9 95 94.7
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 3.0e-42 174.9 95 95.8
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.5e-41 172.6 95 94.7
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 4.1e-39 164.5 95 85.3
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 7.9e-35 150.2 93 82.8
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.2e-27 126.3 97 62.9
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.6e-27 125.9 95 67.4
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.0e-26 121.3 97 67.0
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.2e-25 119.8 97 66.0
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.8e-23 112.5 93 58.1
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.8e-23 112.5 93 58.1
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.8e-23 112.5 95 64.2
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 7.0e-23 110.5 93 55.9
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 7.0e-23 110.5 93 55.9
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 2.0e-22 109.0 82 61.0
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 6.5e-21 104.0 77 64.9
Aa31LG2G14300 Aethionema arabicum HOM05D005649 ORTHO05D006837 5.7e-17 90.9 92 50.0
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 1.7e-16 89.4 91 50.5
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 2.2e-16 89.0 90 50.0
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 8.3e-16 87.0 92 50.0
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 2.4e-15 85.5 93 44.1
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 5.4e-15 84.3 92 43.5
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 9.1e-15 83.6 98 43.9
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 1.6e-14 82.8 89 47.2
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 2.0e-14 82.4 101 43.6
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 2.7e-14 82.0 98 43.9
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 2.7e-14 82.0 91 46.2
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 3.5e-14 81.6 93 41.9
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 4.5e-14 81.3 86 47.7
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 4.5e-14 81.3 90 42.2
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 7.7e-14 80.5 74 52.7
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 1.0e-13 80.1 92 47.8
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.0e-13 80.1 99 43.4
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.0e-13 80.1 99 43.4
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.0e-13 80.1 92 46.7
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 2.3e-13 79.0 87 43.7
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 2.3e-13 79.0 91 40.7
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 2.3e-13 79.0 93 45.2
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 2.3e-13 79.0 83 50.6
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 2.9e-13 78.6 91 42.9
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 2.9e-13 78.6 93 39.8
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 3.8e-13 78.2 100 41.0
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 6.5e-13 77.4 90 42.2
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 6.5e-13 77.4 84 47.6
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 6.5e-13 77.4 93 47.3
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.1e-12 76.6 96 43.8
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.1e-12 76.6 92 40.2
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.1e-12 76.6 90 42.2
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.1e-12 76.6 90 42.2
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.1e-12 76.6 90 42.2
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 1.1e-12 76.6 95 48.4
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 87 47.1
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 1.5e-12 76.3 89 42.7
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 1.9e-12 75.9 86 44.2
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 1.9e-12 75.9 88 43.2
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 1.9e-12 75.9 86 45.3
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.5e-12 75.5 88 45.5
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 2.5e-12 75.5 82 41.5
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 3.2e-12 75.1 93 43.0
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 3.2e-12 75.1 92 47.8
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 3.2e-12 75.1 67 49.3
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 3.2e-12 75.1 67 49.3
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 3.2e-12 75.1 98 40.8
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 4.2e-12 74.7 91 39.6
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 4.2e-12 74.7 93 44.1
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 4.2e-12 74.7 92 44.6
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 4.2e-12 74.7 65 52.3
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 7.2e-12 73.9 108 36.1
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 7.2e-12 73.9 87 46.0
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 7.2e-12 73.9 87 46.0
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 7.2e-12 73.9 91 42.9
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 7.2e-12 73.9 93 39.8
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 9.5e-12 73.6 93 37.6
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 9.5e-12 73.6 89 42.7
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 9.5e-12 73.6 89 41.6
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 1.2e-11 73.2 81 44.4
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 1.6e-11 72.8 83 42.2
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 1.6e-11 72.8 92 47.8
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 1.6e-11 72.8 87 44.8
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 2.1e-11 72.4 83 42.2
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 2.1e-11 72.4 84 44.0
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 2.1e-11 72.4 82 42.7
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.1e-11 72.4 65 46.2
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.1e-11 72.4 61 47.5
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 2.1e-11 72.4 61 47.5
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 2.1e-11 72.4 65 52.3
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 2.8e-11 72.0 93 39.8
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 2.8e-11 72.0 85 41.2
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.8e-11 72.0 61 47.5
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 2.8e-11 72.0 91 42.9
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 3.6e-11 71.6 87 42.5
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 3.6e-11 71.6 91 39.6
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 4.7e-11 71.2 93 37.6
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 4.7e-11 71.2 102 42.2
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 6.1e-11 70.9 93 37.6
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 6.1e-11 70.9 90 43.3
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 8.0e-11 70.5 81 43.2
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 1.0e-10 70.1 64 48.4
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.0e-10 70.1 76 44.7
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.8e-10 69.3 90 36.7
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 2.3e-10 68.9 79 41.8
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 2.3e-10 68.9 93 38.7
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 3.0e-10 68.6 85 41.2
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 3.0e-10 68.6 90 41.1
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 4.0e-10 68.2 86 38.4
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 4.0e-10 68.2 85 44.7
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 5.2e-10 67.8 52 55.8
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 5.2e-10 67.8 76 39.5
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 5.2e-10 67.8 89 40.4
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 2.6e-09 65.5 90 36.7
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 2.6e-09 65.5 91 37.4
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 2.6e-09 65.5 91 37.4
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 2.6e-09 65.5 91 37.4
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 3.4e-09 65.1 86 36.0
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 3.4e-09 65.1 90 35.6
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 4.4e-09 64.7 87 39.1
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 5.7e-09 64.3 66 39.4
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 5.7e-09 64.3 66 42.4
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 6.3e-08 60.8 81 38.3
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 1.4e-07 59.7 60 41.7
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 3.1e-07 58.5 91 36.3


User provided reference genes

Program Settings