Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 1.0e-190 670.2 423 100.0
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 9.9e-178 627.1 428 90.7
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 3.2e-168 595.5 423 91.5
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 2.3e-166 589.3 429 92.8
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 1.5e-165 586.6 414 83.1
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 2.5e-165 585.9 423 89.4
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 8.1e-164 580.9 418 82.3
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 8.1e-164 580.9 418 82.3
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 8.1e-164 580.9 420 83.8
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 1.5e-162 576.6 420 81.7
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 1.5e-162 576.6 420 81.7
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 3.8e-161 572.0 412 87.4
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 2.1e-159 566.2 416 86.5
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 2.7e-159 565.8 417 82.3
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 1.8e-158 563.1 415 81.2
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 2.3e-158 562.8 412 87.1
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 2.3e-158 562.8 412 87.1
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 1.3e-156 557.0 416 86.5
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 2.4e-152 542.7 433 78.5
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.7e-135 486.1 435 73.3
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.4e-131 473.0 420 71.2
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 3.8e-129 465.7 407 73.2
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 4.2e-128 462.2 412 64.8
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 7.2e-128 461.5 408 71.6
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.6e-127 460.3 412 76.0
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 2.7e-127 459.5 412 61.9
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 2.7e-127 459.5 405 70.9
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 7.9e-127 458.0 415 70.6
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 5.1e-126 455.3 409 66.3
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 1.5e-125 453.8 406 68.7
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 1.5e-125 453.8 408 68.1
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 2.6e-125 453.0 404 60.9
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 2.6e-125 453.0 405 68.1
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 2.6e-125 453.0 413 73.6
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 3.3e-125 452.6 404 68.8
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 4.4e-125 452.2 404 65.1
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 5.7e-125 451.8 411 74.9
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 9.7e-125 451.1 411 75.9
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.7e-124 450.3 425 69.9
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 1.7e-124 450.3 421 72.9
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 2.2e-124 449.9 411 78.3
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 4.8e-124 448.7 407 74.7
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 6.3e-124 448.4 399 63.4
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 6.3e-124 448.4 404 70.0
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 6.3e-124 448.4 405 71.1
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 8.2e-124 448.0 407 60.4
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 1.1e-123 447.6 398 61.1
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 1.1e-123 447.6 398 61.1
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 2.4e-123 446.4 401 68.8
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 4.1e-123 445.7 407 70.8
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 4.1e-123 445.7 405 72.3
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 7.0e-123 444.9 413 67.6
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 9.1e-123 444.5 403 63.0
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 1.2e-122 444.1 421 62.9
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 1.5e-122 443.7 422 68.5
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 4.5e-122 442.2 408 68.6
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 4.5e-122 442.2 398 69.8
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 5.9e-122 441.8 398 72.4
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 7.7e-122 441.4 430 71.2
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 1.3e-121 440.7 428 55.4
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 1.7e-121 440.3 405 67.4
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 1.7e-121 440.3 390 67.7
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 2.2e-121 439.9 407 65.8
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 5.0e-121 438.7 392 71.2
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 6.5e-121 438.3 399 73.4
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 1.1e-120 437.6 411 72.3
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 1.4e-120 437.2 419 66.6
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 1.9e-120 436.8 417 69.1
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 3.2e-120 436.0 396 68.7
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 7.2e-120 434.9 451 62.3
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 1.6e-119 433.7 410 70.7
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 2.1e-119 433.3 422 58.8
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 3.6e-119 432.6 399 73.7
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 4.7e-119 432.2 405 67.7
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 8.0e-119 431.4 427 69.6
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 2.3e-118 429.9 414 59.2
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 5.2e-118 428.7 406 67.2
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 6.7e-118 428.3 375 76.8
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 6.7e-118 428.3 409 65.0
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 4.4e-117 425.6 411 55.7
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 5.3e-115 418.7 375 74.1
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 3.5e-114 416.0 422 64.7
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.0e-113 414.5 401 55.1
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 1.3e-113 414.1 447 52.6
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.2e-113 413.3 413 64.9
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 2.9e-113 412.9 394 62.7
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 5.0e-113 412.1 401 55.1
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 1.5e-112 410.6 381 65.9
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.5e-112 410.6 410 65.4
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 4.2e-112 409.1 363 73.8
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.7e-111 405.6 417 63.8
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 1.0e-110 404.4 381 71.7
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 1.8e-110 403.7 374 67.4
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.0e-110 402.5 416 63.5
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 6.7e-110 401.7 349 64.5
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 6.3e-108 395.2 495 50.5
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.0e-105 387.9 355 57.2
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 3.2e-104 382.9 352 64.5
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 3.6e-103 379.4 399 62.4
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 8.0e-103 378.3 397 54.7
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 4.0e-102 375.9 409 62.3
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.8e-102 375.2 409 62.1
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 8.8e-102 374.8 393 53.9
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 8.8e-102 374.8 349 65.9
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 1.7e-100 370.5 381 55.1
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 4.8e-100 369.0 408 55.9
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 1.8e-99 367.1 313 64.5
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 2.4e-99 366.7 404 59.7
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.4e-99 366.7 404 58.9
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.9e-98 362.1 406 54.9
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 1.0e-97 361.3 349 54.4
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 2.9e-97 359.8 319 69.9
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.0e-97 359.0 424 56.4
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 1.4e-94 350.9 346 62.7
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 4.4e-93 345.9 359 66.3
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 1.3e-92 344.4 353 56.4
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 3.1e-86 323.2 176 84.7
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 1.1e-83 314.7 386 51.6
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 3.5e-82 309.7 330 49.7
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.0e-81 308.1 160 86.9
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 6.6e-81 305.4 351 47.6
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 1.5e-80 304.3 383 46.5
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.4e-78 297.7 435 42.5
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.3e-78 297.0 355 47.6
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 4.1e-75 286.2 348 44.3
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 5.6e-72 275.8 376 54.0
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.2e-71 274.6 321 45.2
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 1.8e-62 244.2 131 83.2
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 8.9e-62 241.9 293 63.5
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 6.4e-60 235.7 286 62.9
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 6.6e-57 225.7 119 84.9
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 4.9e-52 209.5 305 58.4
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 1.9e-51 207.6 114 81.6
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 2.4e-46 190.7 113 73.5
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 9.9e-45 185.3 169 53.8
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 7.4e-40 169.1 338 33.4
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 7.4e-40 169.1 92 79.3
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 2.8e-39 167.2 264 45.1
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 3.5e-34 150.2 161 54.7
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 2.5e-27 127.5 154 49.4
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 5.1e-25 119.8 271 31.0
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 5.3e-22 109.8 94 62.8
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 1.5e-13 81.6 39 92.3
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.7e-12 78.2 68 54.4


User provided reference genes

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