Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2216 Capsella rubella HOM05D010116 ORTHO05D012794 4.5e-145 518.1 292 100.0
AL8G38160 Arabidopsis lyrata HOM05D010116 ORTHO05D012794 3.1e-69 266.2 305 62.3
AT5G61470 Arabidopsis thaliana HOM05D010116 ORTHO05D012794 2.2e-67 260.0 304 61.8
CARHR275240 Cardamine hirsuta HOM05D010116 ORTHO05D012794 2.3e-53 213.4 301 52.8
Sp2g24670 Schrenkiella parvula HOM05D010116 ORTHO05D012794 2.3e-48 196.8 309 49.8
Thhalv10005323m.g Eutrema salsugineum HOM05D010116 ORTHO05D012794 1.0e-40 171.4 304 47.4
BcaC06g33240 Brassica carinata HOM05D010116 ORTHO05D012794 1.3e-38 164.5 296 46.3
BolC7t45041H Brassica oleracea HOM05D010116 ORTHO05D012794 1.3e-38 164.5 296 46.3
C07p45180 Brassica napus HOM05D010116 ORTHO05D012794 6.4e-35 152.1 288 46.2
BcaC06g33152 Brassica carinata HOM05D010116 ORTHO05D012794 9.3e-34 148.3 284 46.5
BraA03t13834Z Brassica rapa HOM05D010116 ORTHO05D012794 1.0e-32 144.8 287 46.0
A03p47070 Brassica napus HOM05D010116 ORTHO05D012794 5.1e-32 142.5 285 45.6
BolC2t12210H Brassica oleracea HOM05D010116 ORTHO05D012794 5.6e-23 112.5 264 37.5
BcaB07g29827 Brassica carinata HOM05D010116 ORTHO05D012794 4.8e-22 109.4 258 36.8
A02p41620 Brassica napus HOM05D010116 ORTHO05D012794 1.7e-19 100.9 256 34.8
BcaC06g33241 Brassica carinata HOM05D010116 ORTHO05D012794 1.2e-17 94.7 89 57.3
BraA02t09104Z Brassica rapa HOM05D010116 ORTHO05D012794 4.6e-17 92.8 258 36.4
C02p61560 Brassica napus HOM05D010116 ORTHO05D012794 1.0e-16 91.7 258 36.0
BcaC03g18087 Brassica carinata HOM05D010116 ORTHO05D012794 1.8e-16 90.9 250 35.6
Gohir.A07G041933 Gossypium hirsutum HOM05D010116 ORTHO05D001708 1.0e-11 75.1 238 29.4
Gohir.D07G046050 Gossypium hirsutum HOM05D010116 ORTHO05D001708 1.3e-11 74.7 237 29.1
Gorai.001G049200 Gossypium raimondii HOM05D010116 ORTHO05D001708 1.3e-11 74.7 237 29.1
COL.COLO4_14101 Corchorus olitorius HOM05D001867 ORTHO05D001708 2.5e-10 70.5 236 27.1
PGR042G0355 Punica granatum HOM05D001867 ORTHO05D001708 1.6e-09 67.8 244 25.8
Gohir.D07G046100 Gossypium hirsutum HOM05D000174 ORTHO05D001708 7.9e-09 65.5 239 27.6
Nitab4.5_0007709g0010 Nicotiana tabacum HOM05D001867 ORTHO05D001708 7.9e-09 65.5 258 25.2
Sabra01G0096900 Salix brachista HOM05D001867 ORTHO05D001708 1.3e-08 64.7 254 27.2
Gorai.001G049300 Gossypium raimondii HOM05D000174 ORTHO05D001708 2.3e-08 63.9 239 27.6
MSTRG.28174 Avicennia marina HOM05D001867 ORTHO05D001708 5.1e-08 62.8 242 26.4
Solyc01g090840.3 Solanum lycopersicum HOM05D001867 ORTHO05D001708 5.1e-08 62.8 251 28.3
Thecc.03G153500 Theobroma cacao HOM05D001867 ORTHO05D001708 5.1e-08 62.8 268 28.0
Ciclev10007101m.g Citrus clementina HOM05D001867 ORTHO05D001708 8.7e-08 62.0 250 24.0
Manes.06G133500 Manihot esculenta HOM05D001867 ORTHO05D001708 8.7e-08 62.0 274 24.5
AT3G60580 Arabidopsis thaliana HOM05D001867 ORTHO05D001708 1.5e-07 61.2 257 26.5
SGA_v2.0_scaffold153G36965 Striga asiatica HOM05D001867 ORTHO05D001708 1.5e-07 61.2 247 25.9
Duzib068G0792 Durio zibethinus HOM05D001867 ORTHO05D001708 1.9e-07 60.8 242 24.4
Lj7P537T47 Lonicera japonica HOM05D001867 ORTHO05D001708 1.9e-07 60.8 245 24.9
PGSC0003DMG400026020 Solanum tuberosum HOM05D001867 ORTHO05D001708 2.5e-07 60.5 258 25.2
CiPaw.03G020600 Carya illinoinensis HOM05D001867 ORTHO05D001708 3.3e-07 60.1 258 23.6
AL5G42890 Arabidopsis lyrata HOM05D001867 ORTHO05D001708 4.3e-07 59.7 256 25.8
Potri.001G125900 Populus trichocarpa HOM05D001867 ORTHO05D001708 4.3e-07 59.7 264 24.2
Nitab4.5_0000618g0040 Nicotiana tabacum HOM05D001867 ORTHO05D001708 5.7e-07 59.3 246 26.4
BcaC03g18086 Brassica carinata HOM05D010116 ORTHO05D012794 7.4e-07 58.9 130 40.0
Eucgr.K00165 Eucalyptus grandis HOM05D001867 ORTHO05D001708 7.4e-07 58.9 238 24.8
PGR142G0419 Punica granatum HOM05D001867 ORTHO05D001708 7.4e-07 58.9 261 24.5
Nitab4.5_0006258g0020 Nicotiana tabacum HOM05D000174 ORTHO05D004513 9.7e-07 58.5 238 27.7
MSTRG.17158 Avicennia marina HOM05D001867 ORTHO05D001708 1.6e-06 57.8 291 25.4
Nitab4.5_0001076g0050 Nicotiana tabacum HOM05D001867 ORTHO05D001708 1.6e-06 57.8 235 27.7
Sp5g02650 Schrenkiella parvula HOM05D001867 ORTHO05D001708 2.8e-06 57.0 245 26.9
Medtr4g027440 Medicago truncatula HOM05D001867 ORTHO05D001708 4.8e-06 56.2 272 26.8
QL09p005291 Quercus lobata HOM05D001867 ORTHO05D001708 4.8e-06 56.2 255 23.9
Eucgr.A02901 Eucalyptus grandis HOM05D001867 ORTHO05D001708 8.2e-06 55.5 244 24.6


User provided reference genes

Program Settings