Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2207 Capsella rubella HOM05D007763 ORTHO05D009537 2.6e-202 709.5 730 100.0
CARHR275160 Cardamine hirsuta HOM05D007763 ORTHO05D009537 4.3e-120 436.4 650 91.1
AL8G38070 Arabidopsis lyrata HOM05D007763 ORTHO05D009537 6.4e-116 422.5 652 90.3
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 1.5e-109 401.4 651 88.5
AT5G61400 Arabidopsis thaliana HOM05D007763 ORTHO05D009537 2.4e-94 350.9 233 80.3
BcaNung06902 Brassica carinata HOM05D007763 ORTHO05D009537 8.1e-87 325.9 644 78.4
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 1.1e-80 305.4 651 75.1
C09p08190 Brassica napus HOM05D007763 ORTHO05D009537 1.5e-80 305.1 651 77.4
BolC9t53731H Brassica oleracea HOM05D007763 ORTHO05D009537 1.5e-80 305.1 651 77.4
BraA09t36381Z Brassica rapa HOM05D007763 ORTHO05D009537 2.1e-79 301.2 650 71.4
Aa31LG11G2020 Aethionema arabicum HOM05D007763 ORTHO05D009537 1.3e-73 282.0 662 79.2
THA.LOC104801471 Tarenaya hassleriana HOM05D007763 ORTHO05D009537 3.3e-72 277.3 652 79.8
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 2.0e-45 188.3 125 76.0
COL.COLO4_36930 Corchorus olitorius HOM05D007763 ORTHO05D009537 6.5e-36 156.8 201 44.3
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 2.3e-33 148.3 207 44.0
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 6.8e-33 146.7 192 43.8
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 6.8e-33 146.7 198 43.4
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 8.3e-31 139.8 203 40.9
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 1.1e-30 139.4 209 41.6
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 5.3e-30 137.1 195 41.5
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 2.7e-29 134.8 188 42.6
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 2.7e-29 134.8 203 38.9
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 4.5e-29 134.0 203 38.9
TAR622G0770 Trochodendron aralioides HOM05D007763 ORTHO05D009537 4.5e-29 134.0 176 42.6
Hma1.2p1_0060F.1_g033520 Hydrangea macrophylla HOM05D007763 ORTHO05D009537 1.0e-28 132.9 173 43.4
PSO017G0499 Papaver somniferum HOM05D007763 ORTHO05D009537 1.3e-28 132.5 185 37.3
Manes.14G081200 Manihot esculenta HOM05D007763 ORTHO05D009537 2.5e-27 128.3 157 45.9
Prupe.5G197300 Prunus persica HOM05D007763 ORTHO05D009537 4.2e-27 127.5 178 39.9
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 5.5e-27 127.1 196 38.8
QL10p017571 Quercus lobata HOM05D007763 ORTHO05D009537 7.2e-27 126.7 165 42.4
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 7.2e-27 126.7 221 39.4
Migut.I00207 Erythranthe guttata HOM05D007763 ORTHO05D009537 1.2e-26 125.9 194 38.7
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 1.6e-26 125.6 186 40.9
Dinv38739 Davidia involucrata HOM05D007763 ORTHO05D001128 2.7e-26 124.8 189 40.7
Sc12g0006490 Simmondsia chinensis HOM05D007763 ORTHO05D009537 2.7e-26 124.8 216 36.1
GSVIVG01007974001 Vitis vinifera HOM05D007763 ORTHO05D010304 3.6e-26 124.4 180 41.7
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 1.8e-25 122.1 177 39.5
Lj9C466T13 Lonicera japonica HOM05D007763 ORTHO05D009537 4.0e-25 120.9 177 41.2
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 2.6e-24 118.2 209 36.4
MSTRG.11374 Avicennia marina HOM05D007763 ORTHO05D009537 1.7e-23 115.5 192 35.9
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 2.2e-23 115.2 193 36.8
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 2.2e-23 115.2 182 36.3
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 4.9e-23 114.0 175 39.4
FAN13G0255 Fragaria x ananassa HOM05D007763 ORTHO05D009537 4.9e-23 114.0 158 43.0
FAN18G1924 Fragaria x ananassa HOM05D007763 ORTHO05D009537 4.9e-23 114.0 158 43.0
HanXRQChr08g0236691 Helianthus annuus HOM05D007763 ORTHO05D009537 4.9e-23 114.0 168 38.7
FvH4_5g14610 Fragaria vesca HOM05D007763 ORTHO05D009537 1.4e-22 112.5 158 42.4
CSS0022156 Camellia sinensis var. sinensis HOM05D007763 ORTHO05D009537 1.8e-22 112.1 211 37.4
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 2.4e-22 111.7 178 36.5
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 4.1e-22 110.9 152 40.8
CDE04G3021 Ceratophyllum demersum HOM05D007763 ORTHO05D000003 5.4e-22 110.5 198 34.3
Cc04_g15160 Coffea canephora HOM05D007763 ORTHO05D009537 9.1e-22 109.8 210 35.7
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 1.7e-20 105.5 206 33.5
RcHm_v2.0_Chr7g0181881 Rosa chinensis HOM05D007763 ORTHO05D009537 3.8e-20 104.4 172 40.1
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 2.5e-19 101.7 176 35.2
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 1.8e-17 95.5 191 34.0
CsaV3_5G025970 Cucumis sativus L. HOM05D007763 ORTHO05D009537 4.0e-17 94.4 178 34.3
AUR62008445 Chenopodium quinoa HOM05D007763 ORTHO05D009537 3.4e-16 91.3 194 32.5
Solyc06g069700.4 Solanum lycopersicum HOM05D007763 ORTHO05D009537 3.4e-16 91.3 165 38.8
Oeu052450.2 Olea europaea HOM05D007763 ORTHO05D009537 1.3e-15 89.4 118 38.1
Lalb_Chr08g0235511 Lupinus albus HOM05D007763 ORTHO05D009537 1.7e-15 89.0 89 47.2
Sopen06g027000 Solanum pennellii HOM05D007763 ORTHO05D009537 2.2e-15 88.6 165 38.8
TPR.G27557 Trifolium pratense HOM05D007763 ORTHO05D009537 3.7e-15 87.8 89 43.8
Aqoxy2G01348 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 6.3e-15 87.0 112 40.2
Ca_14664_v3 Cicer arietinum L. HOM05D007763 ORTHO05D009537 2.4e-14 85.1 141 34.8
LjContig00102g0005353 Lotus japonicus HOM05D000001 ORTHO05D010304 7.0e-14 83.6 106 38.7
EL10Ac5g11053 Beta vulgaris HOM05D014602 ORTHO05D009537 3.5e-13 81.3 103 41.7
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 4.6e-13 80.9 194 30.4
MBI02_g14230_MAGBIO Magnolia biondii HOM05D007763 ORTHO05D011706 1.3e-12 79.3 192 30.2
DCAR_002300 Daucus carota HOM05D007763 ORTHO05D009537 2.3e-12 78.6 104 40.4
Phvul.009G185566 Phaseolus vulgaris HOM05D007763 ORTHO05D009537 2.3e-12 78.6 133 33.8
Atru.chr12.1664 Acer truncatum HOM05D007763 ORTHO05D009537 2.9e-12 78.2 65 53.8
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 5.0e-12 77.4 165 34.5
TPR.G11825 Trifolium pratense HOM05D007763 ORTHO05D009537 2.5e-11 75.1 102 38.2
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 2.8e-10 71.6 79 43.0
CAN.G587.9 Capsicum annuum HOM05D007763 ORTHO05D009537 2.8e-10 71.6 134 38.1
Atru.chr12.1659 Acer truncatum HOM05D007763 ORTHO05D009537 8.0e-10 70.1 67 49.3
Psat5g201000 Pisum sativum HOM05D007763 ORTHO05D009537 8.0e-10 70.1 80 43.8
ATR1127G168 Amborella trichopoda HOM05D007763 ORTHO05D009537 3.1e-09 68.2 156 29.5
Medtr3g037490 Medicago truncatula HOM05D007763 ORTHO05D009537 2.0e-08 65.5 64 50.0
Zm00001eb312410 Zea mays HOM05D007763 ORTHO05D009537 5.8e-08 63.9 197 27.4
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 1.7e-07 62.4 185 24.3
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.7e-07 62.4 151 26.5
ECA246G2275 Erigeron canadensis HOM05D007763 ORTHO05D009537 2.2e-07 62.0 61 47.5
vmacro17568 Vaccinium macrocarpon HOM05D007763 ORTHO05D009537 3.7e-07 61.2 80 36.2
Hund02629 Selenicereus undatus HOM05D007763 ORTHO05D019789 6.4e-07 60.5 69 40.6
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 2.4e-06 58.5 168 26.8
Gohir.D12G255476 Gossypium hirsutum HOM05D000001 ORTHO05D000003 4.1e-06 57.8 116 30.2
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 5.4e-06 57.4 168 26.2
Peaxi162Scf00013g00410 Petunia axillaris HOM05D007763 ORTHO05D009537 5.4e-06 57.4 96 34.4
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 5.4e-06 57.4 198 28.3
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 5.4e-06 57.4 165 23.6
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 7.0e-06 57.0 207 25.1
COL.COLO4_29095 Corchorus olitorius HOM05D007358 ORTHO05D009117 7.0e-06 57.0 140 27.9
Gorai.008G273500 Gossypium raimondii HOM05D000001 ORTHO05D000003 9.2e-06 56.6 116 30.2


User provided reference genes

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