Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.1e-70 271.2 327 100.0
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.2e-69 267.7 327 99.4
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 5.8e-69 265.4 327 98.5
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.3e-68 264.2 327 98.8
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.9e-68 263.1 327 98.8
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.1e-67 261.2 327 98.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 2.7e-66 256.5 327 97.2
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.0e-65 254.6 327 96.9
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 3.0e-65 253.1 331 96.4
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 8.7e-65 251.5 327 96.3
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 8.7e-65 251.5 327 96.3
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 2.8e-63 246.5 336 83.0
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 2.4e-62 243.4 326 95.1
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 1.2e-61 241.1 327 94.5
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.2e-61 241.1 343 79.6
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.2e-61 241.1 327 94.5
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 2.0e-61 240.4 326 94.8
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 2.0e-61 240.4 327 93.0
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 4.2e-59 232.6 345 78.0
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.3e-57 227.6 327 91.1
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 2.3e-57 226.9 327 91.1
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.1e-56 224.6 327 88.4
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.5e-56 224.2 327 90.5
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 2.5e-56 223.4 323 91.0
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 7.4e-56 221.9 327 89.9
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.8e-55 219.9 321 89.1
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.7e-55 219.5 327 89.0
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.8e-55 219.2 327 89.6
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.3e-55 218.8 327 89.3
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 2.4e-54 216.9 319 91.2
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.4e-54 216.9 321 90.3
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.4e-54 216.9 315 92.4
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 4.1e-54 216.1 327 89.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 4.1e-54 216.1 324 92.3
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 5.3e-54 215.7 323 87.9
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 6.9e-54 215.3 324 91.4
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 6.9e-54 215.3 319 90.6
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.2e-53 214.5 320 92.2
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.0e-53 213.8 304 94.7
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 2.0e-53 213.8 321 88.2
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.6e-53 213.4 328 89.6
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.6e-53 213.4 324 86.7
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 4.5e-53 212.6 322 91.0
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 4.5e-53 212.6 322 91.0
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 4.5e-53 212.6 319 91.8
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.5e-53 212.6 324 88.6
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 5.9e-53 212.2 319 89.7
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 5.9e-53 212.2 319 90.6
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 7.7e-53 211.8 320 92.2
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 7.7e-53 211.8 321 90.3
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 7.7e-53 211.8 321 91.3
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 7.7e-53 211.8 321 91.3
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 7.7e-53 211.8 323 91.0
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.0e-52 211.5 316 92.1
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 2.9e-52 209.9 320 91.6
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.9e-52 209.9 319 90.3
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 3.8e-52 209.5 328 89.3
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 6.5e-52 208.8 321 91.3
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 6.5e-52 208.8 327 89.6
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 8.5e-52 208.4 321 88.5
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 8.5e-52 208.4 327 89.3
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 8.5e-52 208.4 320 91.2
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.1e-51 208.0 324 90.4
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 1.1e-51 208.0 312 91.7
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.4e-51 207.6 322 90.1
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.4e-51 207.6 324 90.4
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.9e-51 207.2 312 92.0
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.5e-51 206.8 326 89.3
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 2.5e-51 206.8 320 90.9
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 2.5e-51 206.8 321 88.5
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.2e-51 206.5 319 91.5
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 4.2e-51 206.1 324 89.5
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 4.2e-51 206.1 317 90.9
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 4.2e-51 206.1 323 89.8
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 4.2e-51 206.1 320 90.3
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 7.2e-51 205.3 321 90.7
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 9.4e-51 204.9 322 91.3
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 9.4e-51 204.9 322 91.3
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 9.4e-51 204.9 321 88.8
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 9.4e-51 204.9 321 90.3
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.6e-50 204.1 320 90.6
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 2.1e-50 203.8 318 90.6
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 2.1e-50 203.8 317 90.2
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 2.7e-50 203.4 318 90.3
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 2.7e-50 203.4 325 80.0
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 6.1e-50 202.2 321 76.6
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.0e-49 201.4 329 88.1
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.4e-49 201.1 325 87.7
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.4e-49 201.1 324 88.9
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.8e-49 200.7 316 89.9
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 1.8e-49 200.7 325 88.9
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.8e-49 200.7 321 89.4
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 2.3e-49 200.3 319 90.3
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 2.3e-49 200.3 318 89.6
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.9e-49 199.5 319 89.7
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 3.9e-49 199.5 320 86.9
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 6.7e-49 198.7 331 87.3
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 8.8e-49 198.4 326 88.7
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.5e-48 197.6 244 89.3
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.5e-48 196.8 243 88.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 3.3e-48 196.4 240 90.4
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 4.3e-48 196.1 340 60.3
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 9.7e-48 194.9 319 81.5
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 9.7e-48 194.9 321 86.9
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.3e-47 194.5 345 77.1
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 2.2e-47 193.7 321 89.4
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 2.8e-47 193.4 319 89.0
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.8e-47 193.4 296 93.6
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 8.2e-47 191.8 361 66.5
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.1e-46 191.4 296 91.6
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.1e-46 191.4 319 88.7
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.1e-46 188.3 344 64.2
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.2e-45 188.0 326 87.1
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.5e-45 186.0 321 80.4
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.5e-45 186.0 321 80.4
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 1.7e-44 184.1 323 86.4
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.2e-44 183.7 315 87.9
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 5.0e-44 182.6 326 83.4
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.9e-43 180.6 245 69.0
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.2e-43 179.9 320 84.4
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 5.5e-43 179.1 101 85.1
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 5.5e-43 179.1 315 87.6
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.6e-42 177.6 340 83.8
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 2.1e-42 177.2 327 53.5
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.0e-41 174.9 326 84.0
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.0e-41 173.3 242 85.1
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.0e-41 173.3 242 85.1
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.0e-41 173.3 340 75.9
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 5.1e-41 172.6 101 82.2
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 6.7e-41 172.2 321 86.9
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 8.8e-41 171.8 320 85.9
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.1e-40 171.4 100 85.0
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 3.3e-40 169.9 316 87.3
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 4.4e-40 169.5 94 88.3
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 5.7e-40 169.1 319 84.6
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.7e-40 168.3 95 84.2
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 9.7e-40 168.3 95 84.2
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.3e-39 167.9 93 87.1
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.3e-39 167.9 93 87.1
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.2e-39 167.2 321 82.9
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 2.2e-39 167.2 101 80.2
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 2.2e-39 167.2 235 88.5
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.8e-39 166.8 93 84.9
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.8e-39 166.8 323 71.8
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 6.3e-39 165.6 325 81.5
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.3e-39 165.6 331 68.3
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 6.3e-39 165.6 343 79.3
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 8.2e-39 165.2 104 78.8
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 3.1e-38 163.3 104 77.9
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 9.1e-38 161.8 95 82.1
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.5e-37 161.0 325 82.5
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.6e-37 160.2 325 80.3
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 2.6e-37 160.2 99 78.8
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 3.2e-35 153.3 246 80.5
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.7e-31 141.0 242 78.5
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.8e-31 140.2 73 89.0
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.7e-28 131.0 98 62.2
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 8.5e-28 128.6 303 79.2
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.6e-26 124.4 326 74.8
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.2e-24 118.2 74 79.7
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-22 111.7 275 79.6
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.5e-19 101.3 73 68.5
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 5.5e-19 99.4 65 73.8
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 1.0e-17 95.1 50 82.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.8e-17 94.4 64 64.1
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 1.2e-16 91.7 88 51.1
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 2.6e-16 90.5 100 55.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 2.2e-15 87.4 100 53.0
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 7.0e-14 82.4 117 86.3
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.5e-13 79.7 179 88.8
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 4.5e-13 79.7 75 53.3
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 5.9e-13 79.3 50 74.0
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 1.3e-12 78.2 48 81.2
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 8.6e-12 75.5 241 69.3
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 3.3e-11 73.6 45 82.2
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 4.2e-11 73.2 117 48.7
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.2e-10 71.6 42 78.6
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 8.0e-10 68.9 42 78.6
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 6.8e-09 65.9 42 76.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 2.2e-07 60.8 40 72.5


User provided reference genes

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