Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 5.3e-41 170.6 88 100.0
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.1e-35 152.9 88 88.6
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 5.3e-33 144.1 88 84.1
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 5.3e-33 144.1 88 81.8
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 2.0e-32 142.1 88 79.5
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 9.9e-32 139.8 83 90.4
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 4.9e-31 137.5 88 77.3
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 8.4e-31 136.7 88 75.0
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 1.1e-30 136.3 88 76.1
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-30 136.3 88 76.1
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 1.9e-30 135.6 88 76.1
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 2.5e-30 135.2 88 76.1
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 2.5e-30 135.2 88 76.1
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.5e-30 135.2 88 78.4
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 4.2e-30 134.4 88 76.1
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 7.1e-30 133.7 88 75.0
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 7.1e-30 133.7 88 75.0
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 7.1e-30 133.7 88 73.9
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 2.1e-29 132.1 88 75.0
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 2.7e-29 131.7 88 73.9
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 4.6e-29 131.0 86 73.3
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 6.0e-29 130.6 88 73.9
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 6.0e-29 130.6 88 73.9
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 6.0e-29 130.6 88 73.9
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-28 129.4 88 72.7
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-28 129.4 88 71.6
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 1.3e-28 129.4 88 71.6
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 1.8e-28 129.0 88 71.6
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 1.8e-25 119.0 88 68.2
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 6.9e-25 117.1 86 68.6
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 6.5e-23 110.5 86 65.1
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.6e-21 105.9 84 64.3
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 7.9e-21 103.6 82 61.0
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 1.0e-20 103.2 83 60.2
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 1.8e-20 102.4 76 69.7
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.8e-20 102.4 82 59.8
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 2.3e-20 102.1 83 60.2
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 3.0e-20 101.7 83 59.0
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 3.9e-20 101.3 76 69.7
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 3.9e-20 101.3 76 69.7
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 5.1e-20 100.9 76 69.7
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 5.1e-20 100.9 82 58.5
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 5.1e-20 100.9 82 58.5
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 5.1e-20 100.9 82 58.5
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 6.7e-20 100.5 83 61.4
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 6.7e-20 100.5 83 55.4
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.1e-19 99.8 83 59.0
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.9e-19 99.0 83 57.8
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.3e-19 98.2 81 59.3
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.3e-19 98.2 83 57.8
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 3.3e-19 98.2 83 59.0
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 4.3e-19 97.8 82 58.5
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 4.3e-19 97.8 81 60.5
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 4.3e-19 97.8 82 56.1
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 5.7e-19 97.4 85 56.5
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 5.7e-19 97.4 83 57.8
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 5.7e-19 97.4 82 58.5
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 5.7e-19 97.4 83 55.4
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 5.7e-19 97.4 82 53.7
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 9.7e-19 96.7 83 57.8
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.3e-18 96.3 85 54.1
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 1.3e-18 96.3 83 54.2
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.3e-18 96.3 83 54.2
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.3e-18 96.3 83 55.4
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.6e-18 95.9 82 56.1
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 2.2e-18 95.5 84 56.0
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 2.8e-18 95.1 82 57.3
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 2.8e-18 95.1 83 57.8
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 2.8e-18 95.1 82 56.1
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 2.8e-18 95.1 82 53.7
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.7e-18 94.7 80 60.0
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 3.7e-18 94.7 80 60.0
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 3.7e-18 94.7 82 57.3
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 4.8e-18 94.4 83 55.4
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 6.3e-18 94.0 85 52.9
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 6.3e-18 94.0 82 56.1
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 6.3e-18 94.0 83 54.2
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 8.2e-18 93.6 82 53.7
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 8.2e-18 93.6 86 51.2
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 8.2e-18 93.6 84 53.6
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.1e-17 93.2 83 55.4
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 1.4e-17 92.8 81 54.3
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 1.4e-17 92.8 88 61.4
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 1.4e-17 92.8 83 51.8
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 1.4e-17 92.8 84 52.4
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 1.8e-17 92.4 83 51.8
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.8e-17 92.4 83 55.4
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.8e-17 92.4 83 56.6
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.8e-17 92.4 83 56.6
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.8e-17 92.4 83 55.4
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 2.4e-17 92.0 82 54.9
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.4e-17 92.0 80 58.8
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 3.1e-17 91.7 82 52.4
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 4.1e-17 91.3 83 54.2
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.1e-17 91.3 83 54.2
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 4.1e-17 91.3 83 53.0
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.1e-17 91.3 83 53.0
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 5.3e-17 90.9 81 55.6
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 6.9e-17 90.5 79 55.7
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 6.9e-17 90.5 81 54.3
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 1.2e-16 89.7 83 53.0
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.2e-16 89.7 86 54.7
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 1.5e-16 89.4 82 52.4
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.5e-16 89.4 83 51.8
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 1.5e-16 89.4 83 53.0
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 1.5e-16 89.4 83 49.4
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 2.0e-16 89.0 86 52.3
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 4.5e-16 87.8 82 52.4
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.5e-16 87.8 83 53.0
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 5.9e-16 87.4 83 51.8
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 5.9e-16 87.4 83 50.6
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.0e-15 86.7 68 67.6
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 2.2e-15 85.5 82 48.8
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 2.9e-15 85.1 76 57.9
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.9e-15 85.1 83 50.6
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.9e-15 85.1 86 52.3
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 3.8e-15 84.7 83 47.0
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 3.8e-15 84.7 83 50.6
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 3.8e-15 84.7 86 50.0
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 6.5e-15 84.0 87 51.7
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.1e-14 83.2 83 50.6
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 1.4e-14 82.8 82 47.6
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 1.9e-14 82.4 82 45.1
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 1.9e-14 82.4 82 45.1
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.9e-14 82.4 76 52.6
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.2e-14 81.6 84 47.6
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 4.2e-14 81.3 83 48.2
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 5.5e-14 80.9 80 51.2
BraA10t43343Z Brassica rapa HOM05D004709 ORTHO05D005669 2.7e-13 78.6 52 76.9
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 2.7e-13 78.6 83 48.2
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 6.1e-13 77.4 82 48.8
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 6.1e-13 77.4 62 58.1
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.3e-12 75.5 63 58.7
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 2.3e-12 75.5 81 44.4
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 3.9e-12 74.7 67 50.7
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 5.1e-12 74.3 64 59.4
BcaC07g40820 Brassica carinata HOM05D004709 ORTHO05D005669 6.7e-12 73.9 50 76.0
C08p38130 Brassica napus HOM05D004709 ORTHO05D005669 6.7e-12 73.9 50 76.0
BolC8t51388H Brassica oleracea HOM05D004709 ORTHO05D005669 6.7e-12 73.9 50 76.0
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 8.8e-12 73.6 64 54.7
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 8.8e-12 73.6 84 40.5
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.0e-11 72.4 67 55.2
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 3.3e-11 71.6 55 60.0
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 9.7e-11 70.1 86 44.2
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 1.3e-10 69.7 82 43.9
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 6.9e-09 63.9 60 48.3
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 6.9e-09 63.9 86 41.9
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 2.0e-08 62.4 82 40.2
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 3.4e-08 61.6 73 39.7
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 2.9e-07 58.5 83 34.9
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 7.2e-06 53.9 61 44.3


User provided reference genes

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