Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2158 Capsella rubella HOM05D007687 ORTHO05D009692 2.9e-103 379.0 264 100.0
AL8G37500 Arabidopsis lyrata HOM05D007687 ORTHO05D009692 8.0e-85 317.8 268 67.5
AT5G60880 Arabidopsis thaliana HOM05D007687 ORTHO05D009692 9.8e-83 310.8 266 66.2
Thhalv10004801m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 1.4e-76 290.4 266 63.9
Sp2g24190 Schrenkiella parvula HOM05D007687 ORTHO05D009692 8.9e-76 287.7 272 68.0
CARHR274560 Cardamine hirsuta HOM05D007687 ORTHO05D009692 2.4e-73 279.6 268 77.6
BcaNung02611 Brassica carinata HOM05D007687 ORTHO05D009692 1.8e-68 263.5 267 58.1
C07p44640 Brassica napus HOM05D007687 ORTHO05D009692 1.8e-68 263.5 267 58.1
BolC9t53708H Brassica oleracea HOM05D007687 ORTHO05D009692 4.0e-68 262.3 268 71.3
BcaC04g23476 Brassica carinata HOM05D007687 ORTHO05D009692 1.5e-67 260.4 268 70.9
BraA03t13781Z Brassica rapa HOM05D007687 ORTHO05D009692 1.5e-67 260.4 269 59.1
BcaC06g33202 Brassica carinata HOM05D007687 ORTHO05D009692 4.4e-67 258.8 268 60.1
BolC7t44987H Brassica oleracea HOM05D007687 ORTHO05D009692 4.4e-67 258.8 267 57.3
BcaB04g19894 Brassica carinata HOM05D007687 ORTHO05D009692 5.8e-67 258.5 268 70.1
BraA09t36360Z Brassica rapa HOM05D007687 ORTHO05D009692 1.3e-66 257.3 268 70.5
A09p07100 Brassica napus HOM05D007687 ORTHO05D009692 3.2e-65 252.7 269 69.9
C09p07960 Brassica napus HOM05D007687 ORTHO05D009692 1.0e-63 247.7 268 69.4
A03p46570 Brassica napus HOM05D007687 ORTHO05D009692 1.5e-59 233.8 267 55.8
Thhalv10015806m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 1.5e-51 207.2 268 53.7
Aa31LG11G2410 Aethionema arabicum HOM05D007687 ORTHO05D009692 4.9e-50 202.2 176 63.6
THA.LOC104801051 Tarenaya hassleriana HOM05D007687 ORTHO05D009692 1.6e-45 187.2 268 49.3
Sed0010577 Sechium edule HOM05D007687 ORTHO05D009692 9.9e-27 124.8 292 32.9
QL10p020735 Quercus lobata HOM05D007687 ORTHO05D009692 4.6e-24 115.9 281 31.0
Thecc.03G108300 Theobroma cacao HOM05D007687 ORTHO05D009692 1.0e-23 114.8 282 31.2
Prupe.5G209900 Prunus persica HOM05D007687 ORTHO05D009692 2.3e-23 113.6 262 33.2
Duzib205G1319 Durio zibethinus HOM05D007687 ORTHO05D009692 3.7e-21 106.3 267 35.6
Duzib068G1012 Durio zibethinus HOM05D007687 ORTHO05D009692 2.0e-19 100.5 277 28.5
MD14G1216500 Malus domestica HOM05D007687 ORTHO05D009692 2.6e-19 100.1 335 27.8
Ciclev10024235m.g Citrus clementina HOM05D007687 ORTHO05D009692 7.6e-19 98.6 259 29.3
Nn4g23535 Nelumbo nucifera HOM05D007687 ORTHO05D009692 1.7e-18 97.4 277 27.1
COL.COLO4_27494 Corchorus olitorius HOM05D000180 ORTHO05D009692 2.2e-18 97.1 299 28.8
CiPaw.15G114100 Carya illinoinensis HOM05D007687 ORTHO05D009692 2.9e-18 96.7 163 39.9
Duzib084G0111 Durio zibethinus HOM05D007687 ORTHO05D009692 3.8e-18 96.3 283 29.3
Potri.015G048600 Populus trichocarpa HOM05D007687 ORTHO05D009692 4.9e-18 95.9 282 29.8
TAR629G0229 Trochodendron aralioides HOM05D007687 ORTHO05D009692 9.3e-17 91.7 272 28.3
Nitab4.5_0002467g0050 Nicotiana tabacum HOM05D007687 ORTHO05D009692 5.1e-15 85.9 288 31.6
Manes.14G089000 Manihot esculenta HOM05D007687 ORTHO05D009692 6.7e-15 85.5 283 27.9
Glyma.17G081600 Glycine max HOM05D007687 ORTHO05D009692 2.5e-14 83.6 154 37.7
Sabra15G0078700 Salix brachista HOM05D007687 ORTHO05D009692 2.1e-13 80.5 294 27.2
Cfa016835 Carpinus fangiana HOM05D007687 ORTHO05D009692 8.2e-13 78.6 161 38.5
Oeu044771.1 Olea europaea HOM05D007687 ORTHO05D009692 4.1e-12 76.3 280 25.0
Atru.chr4.1593 Acer truncatum HOM05D007687 ORTHO05D009692 6.9e-12 75.5 231 27.3
Lj4g0013896 Lotus japonicus HOM05D007687 ORTHO05D009692 6.9e-12 75.5 257 26.5
FvH4_5g13402 Fragaria vesca HOM05D007687 ORTHO05D009692 9.0e-12 75.1 284 29.2
FAN18G0959 Fragaria x ananassa HOM05D007687 ORTHO05D009692 9.0e-12 75.1 284 29.2
Peaxi162Scf00017g03282 Petunia axillaris HOM05D007687 ORTHO05D009692 9.0e-12 75.1 290 26.2
VMungo1215G2041 Vigna mungo HOM05D007687 ORTHO05D009692 5.9e-11 72.4 180 32.8
C02p61170 Brassica napus HOM05D007687 ORTHO05D033574 1.0e-10 71.6 56 66.1
BolC2t12162H Brassica oleracea HOM05D007687 ORTHO05D033574 1.0e-10 71.6 56 66.1
SGA_v2.0_scaffold105G30431 Striga asiatica HOM05D007687 ORTHO05D009692 1.7e-10 70.9 258 27.5
Nitab4.5_0005994g0030 Nicotiana tabacum HOM05D007687 ORTHO05D009692 2.9e-10 70.1 275 29.8
Cc04_g08290 Coffea canephora HOM05D007687 ORTHO05D009692 1.4e-09 67.8 55 56.4
Medtr2g461550 Medicago truncatula HOM05D007687 ORTHO05D009692 1.9e-09 67.4 177 31.6
Ca_21756_v3 Cicer arietinum L. HOM05D007687 ORTHO05D009692 7.2e-09 65.5 158 36.1
FAN08G0723 Fragaria x ananassa HOM05D007687 ORTHO05D009692 7.2e-09 65.5 284 27.1
ClCG04G011570 Citrullus lanatus HOM05D007687 ORTHO05D009692 9.3e-09 65.1 241 26.6
CsaV3_1G006250 Cucumis sativus L. HOM05D007687 ORTHO05D009692 9.3e-09 65.1 202 30.2
Phvul.003G182300 Phaseolus vulgaris HOM05D007687 ORTHO05D009692 1.2e-08 64.7 55 52.7
CANSAT56G1485 Cannabis sativa HOM05D007687 ORTHO05D009692 2.1e-08 63.9 169 33.7
Actinidia10442 Actinidia chinensis HOM05D007687 ORTHO05D009692 2.7e-08 63.5 287 26.1
CANSAT56G0292 Cannabis sativa HOM05D007687 ORTHO05D009692 2.7e-08 63.5 169 33.7
CAN.G982.38 Capsicum annuum HOM05D007687 ORTHO05D009692 6.1e-08 62.4 297 24.6
Dinv07975 Davidia involucrata HOM05D007687 ORTHO05D009692 7.9e-08 62.0 157 29.3
Glyma.05G018400 Glycine max HOM05D007687 ORTHO05D009692 1.8e-07 60.8 135 35.6
Manes.06G080900 Manihot esculenta HOM05D007687 ORTHO05D009692 1.1e-06 58.2 169 29.6
A02p41240 Brassica napus HOM05D007687 ORTHO05D009692 1.5e-06 57.8 29 82.8
PSO063G2070 Papaver somniferum HOM05D035011 ORTHO05D031291 2.5e-06 57.0 223 24.7
Lj5A137T61 Lonicera japonica HOM05D007687 ORTHO05D009692 9.7e-06 55.1 172 24.4
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 9.7e-06 55.1 156 31.4


User provided reference genes

Program Settings