Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 3.0e-68 261.9 152 100.0
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 2.5e-59 232.3 152 82.2
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 2.2e-50 202.6 137 82.5
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 1.0e-47 193.7 154 77.3
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 1.0e-44 183.7 152 70.4
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 3.2e-38 162.2 145 67.6
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 3.2e-38 162.2 145 67.6
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 4.2e-38 161.8 152 64.5
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 9.4e-38 160.6 152 61.8
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 9.4e-38 160.6 149 65.1
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 1.2e-37 160.2 149 65.8
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 2.7e-37 159.1 149 65.8
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 2.3e-36 156.0 152 64.5
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 4.4e-35 151.8 161 58.4
C03p12750 Brassica napus HOM05D010860 ORTHO05D005733 3.6e-29 132.1 117 66.7
Sp6g22220 Schrenkiella parvula HOM05D010860 ORTHO05D005733 1.8e-28 129.8 152 59.2
BolC3t13741H Brassica oleracea HOM05D010860 ORTHO05D005733 4.0e-28 128.6 117 65.8
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.5e-11 73.6 146 36.3
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.7e-11 71.6 134 37.3
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 5.7e-11 71.6 149 35.6
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 7.5e-11 71.2 146 36.3
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 1.7e-10 70.1 152 33.6
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 2.9e-10 69.3 148 37.2
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 4.9e-10 68.6 148 34.5
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 6.4e-10 68.2 148 36.5
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 8.3e-10 67.8 148 36.5
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 8.3e-10 67.8 148 36.5
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.1e-09 67.4 135 31.9
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.4e-09 67.0 139 37.4
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.4e-09 67.0 148 36.5
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 3.2e-09 65.9 148 36.5
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 7.0e-09 64.7 132 34.1
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.2e-08 63.9 142 29.6
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.0e-08 63.2 140 37.9
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 2.0e-08 63.2 135 33.3
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 2.7e-08 62.8 143 31.5
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 2.7e-08 62.8 153 33.3
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 4.6e-08 62.0 135 32.6
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.6e-08 62.0 134 32.8
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 4.6e-08 62.0 146 30.8
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 5.9e-08 61.6 140 30.7
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 5.9e-08 61.6 136 33.8
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.3e-07 60.5 135 32.6
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.3e-07 59.7 152 28.9
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 2.3e-07 59.7 142 32.4
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 2.3e-07 59.7 149 34.2
THA.LOC104810857 Tarenaya hassleriana HOM05D010860 ORTHO05D005733 2.3e-07 59.7 152 32.9
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 3.0e-07 59.3 135 33.3
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 3.0e-07 59.3 144 32.6
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 3.9e-07 58.9 148 31.8
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 6.6e-07 58.2 127 31.5
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 8.6e-07 57.8 148 32.4
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 1.1e-06 57.4 140 30.7
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 2.5e-06 56.2 152 28.9
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.5e-06 56.2 144 30.6
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.3e-06 55.8 135 31.9
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 4.3e-06 55.5 143 33.6
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.3e-06 55.5 137 29.9
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 5.6e-06 55.1 143 30.8
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 7.3e-06 54.7 138 29.7
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 7.3e-06 54.7 143 30.8
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 7.3e-06 54.7 145 34.5
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 9.5e-06 54.3 146 28.8
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 9.5e-06 54.3 153 28.8


User provided reference genes

Program Settings