Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 7.1e-226 786.9 401 100.0
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 3.3e-199 698.4 411 87.8
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 6.5e-195 684.1 416 87.0
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 2.5e-186 655.6 408 83.6
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 2.7e-177 625.5 416 77.4
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 3.9e-176 621.7 408 79.9
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 2.0e-175 619.4 417 78.4
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 3.7e-174 615.1 413 77.7
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 1.4e-173 613.2 411 77.9
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 6.9e-173 610.9 411 78.1
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 3.0e-160 568.9 417 72.2
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 5.0e-131 471.9 274 83.9
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 1.4e-128 463.8 301 81.1
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 4.1e-117 425.6 395 57.5
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 6.8e-112 408.3 399 55.1
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 6.8e-112 408.3 399 55.1
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 5.8e-111 405.2 409 53.5
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.7e-110 403.7 390 55.1
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 4.1e-109 399.1 407 53.8
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 9.2e-109 397.9 398 53.5
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 4.6e-108 395.6 399 54.1
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 6.0e-108 395.2 408 52.5
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 6.6e-107 391.7 402 53.2
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 8.6e-107 391.3 413 50.6
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 1.5e-106 390.6 419 52.3
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.1e-104 384.4 367 54.2
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.4e-104 384.0 383 53.5
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.2e-104 382.1 380 53.4
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.5e-103 380.6 406 52.7
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 7.6e-103 378.3 429 50.6
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 3.8e-102 375.9 413 51.3
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 8.4e-102 374.8 389 51.4
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 1.1e-101 374.4 402 50.7
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 1.9e-101 373.6 402 50.2
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 9.3e-101 371.3 389 50.9
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 1.2e-100 370.9 419 49.6
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.2e-100 370.9 380 53.2
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 1.6e-100 370.5 385 51.2
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.6e-100 370.5 366 52.5
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 2.1e-100 370.2 414 49.5
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 2.1e-100 370.2 421 46.1
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 2.7e-100 369.8 404 50.0
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.5e-100 369.4 403 49.9
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.0e-99 367.9 384 51.0
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 3.9e-99 365.9 407 49.4
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 1.9e-98 363.6 388 51.3
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 7.3e-98 361.7 410 49.0
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 9.6e-98 361.3 384 52.3
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 1.6e-97 360.5 392 50.8
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 1.6e-97 360.5 397 48.6
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.4e-96 357.5 383 49.9
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 6.9e-96 355.1 414 46.9
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 9.0e-96 354.8 376 48.4
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.2e-95 354.4 379 50.7
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.2e-95 354.4 370 49.5
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 2.0e-95 353.6 417 47.5
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 5.8e-95 352.1 404 45.5
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 5.8e-95 352.1 373 50.7
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.3e-94 350.9 404 46.0
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.4e-93 347.4 388 49.0
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 3.2e-93 346.3 403 47.6
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 2.1e-92 343.6 400 45.5
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 3.5e-92 342.8 413 45.8
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 7.9e-92 341.7 414 45.7
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 3.9e-91 339.3 292 56.2
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 1.5e-90 337.4 397 47.1
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 2.5e-90 336.7 383 48.6
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 2.1e-89 333.6 361 49.3
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 4.0e-88 329.3 398 47.0
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 2.6e-87 326.6 431 44.5
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 3.4e-87 326.2 422 45.0
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 3.4e-87 326.2 394 48.5
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 2.2e-86 323.6 371 46.9
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 4.2e-85 319.3 368 48.6
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 7.1e-85 318.5 383 46.7
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 9.3e-85 318.2 389 48.6
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 1.6e-84 317.4 391 46.0
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.0e-83 314.7 348 48.9
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 1.8e-83 313.9 382 42.4
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 2.3e-83 313.5 371 48.2
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 6.7e-83 312.0 395 47.6
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 3.3e-82 309.7 363 44.1
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.3e-82 309.3 309 54.0
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 1.3e-81 307.8 388 44.6
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 1.6e-81 307.4 370 46.2
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.1e-80 304.7 279 53.8
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.8e-80 303.9 399 44.6
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 4.0e-80 302.8 350 48.0
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.3e-78 297.7 310 55.2
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.7e-78 297.4 380 46.3
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.4e-77 294.3 398 44.5
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 2.5e-77 293.5 361 43.8
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 1.6e-76 290.8 348 46.3
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 1.5e-74 284.3 389 43.7
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 5.7e-74 282.3 410 43.2
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 9.6e-74 281.6 406 42.4
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 1.3e-73 281.2 401 40.1
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.6e-73 280.8 370 44.6
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 1.1e-72 278.1 237 55.3
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.9e-71 272.3 301 46.5
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.3e-70 271.2 362 40.6
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 2.1e-68 263.8 391 40.9
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 3.6e-68 263.1 353 41.6
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.0e-67 261.5 436 38.1
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.3e-67 261.2 398 40.2
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 2.3e-67 260.4 378 42.1
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 6.7e-67 258.8 235 50.6
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 1.1e-66 258.1 289 46.7
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.5e-66 257.7 278 45.7
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 9.7e-66 255.0 378 41.0
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.4e-64 251.1 356 39.9
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 1.4e-64 251.1 387 38.8
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 3.8e-62 243.0 311 42.1
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.1e-61 241.5 273 45.4
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 8.8e-59 231.9 283 41.7
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.9e-53 214.2 251 51.4
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.9e-53 214.2 344 38.1
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 3.2e-53 213.4 181 53.6
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 6.1e-52 209.1 194 51.5
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.2e-45 186.8 181 49.2
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 1.2e-44 184.9 192 46.9
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.9e-37 161.0 237 43.9
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 4.7e-36 156.4 230 44.3
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.7e-33 147.9 212 42.5
AT3G57110 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 4.1e-32 143.3 127 68.5
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 1.0e-30 138.7 134 47.8
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 2.0e-26 124.4 112 54.5
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 5.9e-23 112.8 94 50.0
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 1.5e-21 108.2 94 50.0
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 9.5e-21 105.5 107 43.0
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 2.8e-20 104.0 172 41.9
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.0e-18 97.8 103 46.6
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.7e-17 94.7 103 44.7
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 3.7e-17 93.6 76 61.8
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.4e-16 90.9 91 49.5
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 2.4e-16 90.9 109 42.2
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 4.1e-16 90.1 99 50.5
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 9.2e-16 89.0 91 44.0
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 5.9e-15 86.3 82 46.3
AL8G13380 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 1.1e-13 82.0 52 76.9
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 4.9e-09 66.6 88 31.8
BolC9t58175H Brassica oleracea HOM05D005177 ORTHO05D006175 3.2e-08 63.9 52 63.5
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 2.7e-07 60.8 139 37.4


User provided reference genes

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