Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 2.8e-54 214.9 100 100.0
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 7.1e-42 173.7 100 86.0
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 7.1e-42 173.7 100 86.0
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 7.1e-42 173.7 100 86.0
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 7.1e-42 173.7 100 86.0
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 7.1e-42 173.7 100 86.0
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 7.1e-42 173.7 100 86.0
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 9.2e-42 173.3 100 85.0
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 9.2e-42 173.3 100 85.0
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 9.2e-42 173.3 100 85.0
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 9.2e-42 173.3 100 86.0
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 9.2e-42 173.3 100 85.0
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 2.1e-41 172.2 100 85.0
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 3.5e-41 171.4 100 84.0
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 3.0e-40 168.3 100 81.0
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 5.6e-39 164.1 98 80.6
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.8e-37 159.1 127 67.7
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.5e-36 156.0 98 75.5
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.5e-36 156.0 103 74.8
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 2.0e-36 155.6 99 77.8
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 2.0e-36 155.6 98 74.5
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 2.6e-36 155.2 98 75.5
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 2.6e-36 155.2 97 74.2
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 2.6e-36 155.2 98 76.5
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.4e-36 154.8 103 73.8
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 4.4e-36 154.5 98 73.5
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 5.8e-36 154.1 98 74.5
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 9.9e-36 153.3 95 76.8
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 2.2e-35 152.1 98 74.5
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.2e-35 152.1 95 75.8
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 2.9e-35 151.8 99 73.7
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 3.8e-35 151.4 95 74.7
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.9e-35 151.0 98 72.4
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.9e-35 151.0 98 72.4
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 8.4e-35 150.2 98 72.4
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 8.4e-35 150.2 98 72.4
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.1e-34 149.8 98 73.5
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 1.4e-34 149.4 99 72.7
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 1.9e-34 149.1 98 74.5
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 1.9e-34 149.1 98 73.5
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.9e-34 149.1 99 71.7
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.9e-34 149.1 103 73.8
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 2.4e-34 148.7 94 74.5
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 2.4e-34 148.7 94 73.4
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 2.4e-34 148.7 98 72.4
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.4e-34 148.7 91 75.8
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 2.4e-34 148.7 95 74.7
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 3.2e-34 148.3 95 74.7
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 3.2e-34 148.3 95 74.7
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 4.2e-34 147.9 95 74.7
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 4.2e-34 147.9 95 73.7
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 4.2e-34 147.9 98 72.4
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 5.4e-34 147.5 98 71.4
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 5.4e-34 147.5 98 72.4
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 7.1e-34 147.1 95 71.6
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 7.1e-34 147.1 97 73.2
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 9.2e-34 146.7 103 68.9
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 9.2e-34 146.7 98 71.4
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 9.2e-34 146.7 95 74.7
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 9.2e-34 146.7 106 68.9
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.6e-33 146.0 94 71.3
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.6e-33 146.0 95 73.7
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.6e-33 146.0 115 66.1
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 2.1e-33 145.6 95 70.5
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 2.1e-33 145.6 98 72.4
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 2.7e-33 145.2 102 68.6
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 3.5e-33 144.8 98 72.4
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 4.6e-33 144.4 96 71.9
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 7.8e-33 143.7 98 68.4
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 7.8e-33 143.7 95 70.5
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.0e-32 143.3 98 68.4
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.7e-32 142.5 90 74.4
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 2.3e-32 142.1 103 68.9
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 2.3e-32 142.1 98 65.3
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 3.0e-32 141.7 95 70.5
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 3.0e-32 141.7 97 68.0
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 3.0e-32 141.7 97 68.0
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 3.9e-32 141.4 91 71.4
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 3.9e-32 141.4 99 65.7
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 5.1e-32 141.0 100 70.0
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 5.1e-32 141.0 100 68.0
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 6.6e-32 140.6 100 69.0
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 8.7e-32 140.2 97 68.0
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 8.7e-32 140.2 90 73.3
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 1.1e-31 139.8 91 70.3
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 1.1e-31 139.8 98 66.3
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 2.5e-31 138.7 91 71.4
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.5e-31 138.7 98 66.3
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 2.5e-31 138.7 98 67.3
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 2.5e-31 138.7 97 68.0
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 2.5e-31 138.7 97 68.0
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.3e-31 138.3 99 65.7
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 4.3e-31 137.9 103 67.0
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 4.3e-31 137.9 95 68.4
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 4.3e-31 137.9 92 70.7
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 4.3e-31 137.9 98 66.3
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.3e-30 136.3 98 69.4
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 8.1e-30 133.7 103 64.1
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 8.1e-30 133.7 91 68.1
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 8.1e-30 133.7 97 64.9
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 1.1e-29 133.3 98 63.3
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.4e-29 132.1 98 63.3
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 5.3e-29 131.0 97 63.9
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.7e-27 125.9 80 72.5
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 5.4e-26 120.9 76 77.6
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 7.1e-26 120.6 76 80.3
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 1.2e-25 119.8 76 77.6
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 1.2e-25 119.8 77 79.2
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 1.2e-25 119.8 76 77.6
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 7.3e-23 110.5 90 58.9
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 3.6e-22 108.2 90 57.8
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 9.0e-21 103.6 85 63.5
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 3.8e-19 98.2 64 76.6
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 8.4e-19 97.1 63 77.8
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.4e-18 96.3 88 56.8
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 1.3e-16 89.7 100 52.0
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.1e-15 86.7 62 71.0
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 8.1e-14 80.5 94 51.1
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 4.0e-13 78.2 81 50.6
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 3.0e-08 62.0 28 100.0
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 5.1e-08 61.2 92 43.5
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 6.7e-08 60.8 28 96.4
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 8.7e-08 60.5 28 96.4
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 8.7e-08 60.5 28 96.4
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.5e-07 59.7 91 44.0
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 1.9e-07 59.3 92 41.3
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.9e-07 59.3 28 92.9
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 4.3e-07 58.2 90 40.0
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 7.4e-07 57.4 28 89.3
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 7.4e-07 57.4 47 63.8
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 1.3e-06 56.6 28 85.7


User provided reference genes

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