Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 5.6e-144 514.2 256 100.0
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 9.0e-142 506.9 256 98.4
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 3.4e-141 505.0 256 97.3
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 3.4e-141 505.0 256 96.9
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 5.8e-141 504.2 256 96.5
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 1.0e-140 503.4 256 97.3
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 1.3e-140 503.1 256 96.9
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 1.3e-140 503.1 256 96.9
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 1.3e-140 503.1 256 96.9
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 3.8e-140 501.5 256 96.9
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 6.5e-140 500.7 256 96.1
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 9.3e-139 496.9 256 95.3
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 2.3e-137 492.3 283 89.0
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 2.5e-136 488.8 255 95.3
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 6.5e-132 474.2 256 91.8
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.2e-130 469.9 254 89.8
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.0e-124 450.3 251 86.5
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.9e-123 446.0 254 83.1
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 1.2e-122 443.4 254 84.3
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.2e-122 443.4 259 83.0
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.1e-122 442.6 251 83.7
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 2.7e-122 442.2 255 83.5
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 6.1e-122 441.0 250 83.6
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.0e-121 440.3 254 82.7
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.4e-121 439.9 251 83.3
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.8e-121 439.5 254 82.7
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 2.3e-121 439.1 254 83.1
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.9e-121 438.3 254 82.3
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 5.1e-121 438.0 254 83.5
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.3e-120 435.3 255 82.4
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 7.4e-120 434.1 254 82.7
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 7.4e-120 434.1 258 80.2
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 9.7e-120 433.7 254 81.9
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 1.3e-119 433.3 256 82.0
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 1.7e-119 433.0 262 81.3
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.7e-119 433.0 251 82.5
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 1.7e-119 433.0 254 82.7
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.7e-119 433.0 247 84.2
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 2.2e-119 432.6 251 82.5
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 2.2e-119 432.6 254 81.9
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 4.8e-119 431.4 254 82.3
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 6.3e-119 431.0 254 81.9
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 1.1e-118 430.3 251 80.9
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 1.4e-118 429.9 259 79.9
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 1.4e-118 429.9 251 82.1
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 2.4e-118 429.1 253 80.2
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 4.1e-118 428.3 254 79.9
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 4.1e-118 428.3 251 81.3
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 5.3e-118 427.9 250 82.4
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 5.3e-118 427.9 254 80.3
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 5.3e-118 427.9 254 81.1
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 9.1e-118 427.2 251 81.3
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.5e-117 426.4 253 81.8
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 1.5e-117 426.4 253 81.8
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 2.0e-117 426.0 251 81.7
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 4.5e-117 424.9 254 81.1
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.9e-116 422.2 256 81.2
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 5.0e-116 421.4 250 79.2
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 5.0e-116 421.4 256 81.6
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 6.5e-116 421.0 259 78.4
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.1e-115 420.2 254 79.9
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 1.9e-115 419.5 256 79.7
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 5.5e-115 417.9 246 80.5
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 5.5e-115 417.9 254 78.0
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 5.5e-115 417.9 254 78.0
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 5.5e-115 417.9 251 79.3
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 1.2e-114 416.8 255 77.6
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.2e-114 416.8 246 80.9
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.2e-114 416.8 251 79.3
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 1.2e-114 416.8 256 78.5
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 2.1e-114 416.0 247 80.6
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 2.1e-114 416.0 255 77.6
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 2.7e-114 415.6 247 78.9
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 2.7e-114 415.6 248 79.0
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 8.0e-114 414.1 247 78.5
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.4e-113 413.3 254 77.6
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 1.4e-113 413.3 252 76.6
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 6.7e-113 411.0 251 79.3
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 6.7e-113 411.0 251 78.1
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 3.3e-112 408.7 255 76.5
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 7.4e-112 407.5 254 76.0
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.3e-111 406.8 305 69.2
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.7e-111 406.4 256 78.5
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 2.2e-111 406.0 247 77.3
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 2.2e-111 406.0 276 72.5
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.4e-110 403.3 253 75.9
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 7.0e-110 401.0 254 78.0
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 9.1e-110 400.6 254 74.8
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 1.6e-109 399.8 259 73.7
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 2.0e-109 399.4 281 70.5
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 2.6e-109 399.1 255 76.1
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 3.2e-107 392.1 282 68.8
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 5.5e-107 391.3 233 80.7
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 7.2e-107 391.0 254 74.0
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 1.8e-105 386.3 254 72.8
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 2.3e-105 386.0 252 74.6
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 1.2e-104 383.6 230 79.6
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 7.5e-104 380.9 192 97.9
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.4e-102 376.7 323 62.5
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 6.8e-97 357.8 218 79.4
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.3e-95 353.6 236 74.2
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 3.7e-95 352.1 248 72.2
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 4.1e-94 348.6 248 71.4
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 4.1e-94 348.6 251 69.7
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 7.0e-94 347.8 202 84.7
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 2.0e-93 346.3 202 84.2
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 2.0e-93 346.3 202 84.2
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 3.5e-93 345.5 202 82.7
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.7e-92 343.2 247 70.4
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 2.9e-92 342.4 219 77.2
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 3.8e-92 342.0 270 65.2
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 1.2e-90 337.0 230 74.3
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 5.7e-88 328.2 201 78.6
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 2.2e-87 326.2 201 78.1
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 9.2e-86 320.9 245 62.0
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 2.7e-85 319.3 245 62.0
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 8.9e-81 304.3 208 71.2
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.2e-80 303.9 259 61.8
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 7.5e-80 301.2 240 60.4
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 8.6e-76 287.7 244 59.4
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 2.8e-74 282.7 255 56.5
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 4.0e-73 278.9 296 54.7
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.9e-70 270.0 165 80.6
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.1e-67 260.8 157 82.8
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.6e-66 256.9 160 78.1
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 1.8e-65 253.4 153 82.4
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 3.1e-65 252.7 166 76.5
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.9e-63 246.1 160 77.5
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.5e-59 233.8 150 76.7
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 3.3e-59 232.6 209 59.8
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 4.3e-59 232.3 240 50.0
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 1.1e-57 227.6 136 81.6
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 5.4e-54 215.3 160 67.5
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 8.7e-52 208.0 135 74.1
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.3e-47 194.1 153 61.4
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 7.1e-46 188.3 140 70.0
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 8.1e-42 174.9 100 86.0
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 1.8e-36 157.1 75 94.7
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 2.3e-36 156.8 75 97.3
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 3.9e-36 156.0 75 94.7
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 3.9e-36 156.0 76 96.1
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 3.9e-36 156.0 75 94.7
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 1.2e-29 134.4 63 96.8
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 3.0e-28 129.8 64 98.4
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 2.0e-24 117.1 136 51.5
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 2.6e-16 90.1 53 79.2
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 2.2e-07 60.5 40 72.5
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 6.5e-07 58.9 46 58.7


User provided reference genes

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