Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2042 Capsella rubella HOM05D002619 ORTHO05D002804 3.8e-104 381.7 220 100.0
AT5G59760 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 7.4e-76 287.7 221 81.9
CARHR273340 Cardamine hirsuta HOM05D002619 ORTHO05D002804 2.6e-73 279.3 221 79.6
AL8G36280 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 8.5e-72 274.2 220 80.0
Thhalv10014545m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 1.9e-71 273.1 226 77.0
Sp6g21430 Schrenkiella parvula HOM05D002619 ORTHO05D002804 4.2e-71 271.9 228 73.2
C02p12190 Brassica napus HOM05D002619 ORTHO05D002804 7.2e-71 271.2 220 79.5
BraA10t43782Z Brassica rapa HOM05D002619 ORTHO05D002804 2.0e-65 253.1 222 76.1
C09p52230 Brassica napus HOM05D002619 ORTHO05D002804 8.5e-64 247.7 224 69.2
BcaC04g19626 Brassica carinata HOM05D002619 ORTHO05D002804 1.9e-63 246.5 224 70.1
BcaB05g22574 Brassica carinata HOM05D002619 ORTHO05D002804 1.5e-57 226.9 221 69.7
BolC2t07321H Brassica oleracea HOM05D002619 ORTHO05D002804 1.1e-55 220.7 221 67.0
A10p16980 Brassica napus HOM05D002619 ORTHO05D002804 1.9e-55 219.9 224 70.1
BcaB08g36223 Brassica carinata HOM05D002619 ORTHO05D002804 2.5e-55 219.5 226 71.2
BraA02t05769Z Brassica rapa HOM05D002619 ORTHO05D002804 1.5e-52 210.3 224 64.3
A02p06890 Brassica napus HOM05D002619 ORTHO05D002804 1.7e-51 206.8 224 63.4
Aa31sc23G210 Aethionema arabicum HOM05D002619 ORTHO05D002804 2.7e-46 189.5 221 67.4
THA.LOC104814869 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 3.4e-36 156.0 220 50.0
AT2G28690 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 1.4e-21 107.5 234 44.0
AL4G23230 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 3.0e-21 106.3 183 49.2
Thhalv10017181m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 6.8e-21 105.1 191 50.8
BolC4t23756H Brassica oleracea HOM05D002619 ORTHO05D002804 4.4e-20 102.4 187 51.3
BraA07t29626Z Brassica rapa HOM05D002619 ORTHO05D002804 5.7e-20 102.1 236 44.1
BcaB02g10192 Brassica carinata HOM05D002619 ORTHO05D002804 9.8e-20 101.3 235 45.1
A07p19190 Brassica napus HOM05D002619 ORTHO05D002804 1.3e-19 100.9 235 45.1
CARHR121800 Cardamine hirsuta HOM05D002619 ORTHO05D002804 1.3e-19 100.9 182 49.5
BcaC02g10992 Brassica carinata HOM05D002619 ORTHO05D002804 4.9e-19 99.0 187 50.8
C04p22400 Brassica napus HOM05D002619 ORTHO05D002804 4.9e-19 99.0 187 50.8
Carub.0004s0969 Capsella rubella HOM05D002619 ORTHO05D002804 6.4e-19 98.6 187 48.7
BcaB01g03117 Brassica carinata HOM05D002619 ORTHO05D002804 2.4e-18 96.7 187 46.0
BcaNung06778 Brassica carinata HOM05D002619 ORTHO05D002804 2.4e-18 96.7 187 46.0
Cc01_g12250 Coffea canephora HOM05D002619 ORTHO05D002804 2.4e-18 96.7 183 42.1
GSVIVG01025039001 Vitis vinifera HOM05D002619 ORTHO05D002804 2.4e-18 96.7 229 43.7
Dinv26273 Davidia involucrata HOM05D002619 ORTHO05D002804 9.2e-18 94.7 233 42.9
COL.COLO4_18442 Corchorus olitorius HOM05D002619 ORTHO05D002804 1.6e-17 94.0 239 39.7
Sp4g11560 Schrenkiella parvula HOM05D002619 ORTHO05D002804 2.0e-17 93.6 209 45.5
Manes.11G134700 Manihot esculenta HOM05D002619 ORTHO05D002804 2.3e-16 90.1 266 36.8
Cpa.g.sc252.23 Carica papaya HOM05D002619 ORTHO05D002804 6.6e-16 88.6 256 37.9
THA.LOC104800642 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 1.5e-15 87.4 260 39.2
ClCG03G001850 Citrullus lanatus HOM05D002619 ORTHO05D002804 7.3e-15 85.1 239 41.0
Thecc.09G328300 Theobroma cacao HOM05D002619 ORTHO05D002804 1.2e-14 84.3 230 40.9
THA.LOC104815768 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 2.1e-14 83.6 239 37.2
Aa31LG5G7520 Aethionema arabicum HOM05D002619 ORTHO05D002804 2.8e-14 83.2 219 38.4
Actinidia37246 Actinidia chinensis HOM05D002619 ORTHO05D002804 3.6e-14 82.8 276 34.8
THA.LOC104826341 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 4.7e-14 82.4 264 32.6
Cfa011444 Carpinus fangiana HOM05D002619 ORTHO05D002804 6.2e-14 82.0 300 36.0
Duzib170G0200 Durio zibethinus HOM05D002619 ORTHO05D002804 8.0e-14 81.6 267 36.7
Gohir.A13G229100 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.0e-13 81.3 186 37.1
Gohir.D13G234700 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.4e-13 80.9 186 43.0
Peaxi162Scf00406g00012 Petunia axillaris HOM05D002619 ORTHO05D002804 1.4e-13 80.9 235 39.1
TWI75G1695 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 4.0e-13 79.3 209 40.2
Rhsim13G0087400 Rhododendron simsii HOM05D002619 ORTHO05D002804 5.2e-13 79.0 277 33.9
Sabra09G0018200 Salix brachista HOM05D002619 ORTHO05D002804 6.8e-13 78.6 257 31.9
CAN.G820.11 Capsicum annuum HOM05D002619 ORTHO05D002804 8.9e-13 78.2 247 33.2
Haze_24026 Corylus avellana HOM05D002619 ORTHO05D002804 8.9e-13 78.2 282 36.5
Nitab4.5_0003179g0060 Nicotiana tabacum HOM05D002619 ORTHO05D002804 8.9e-13 78.2 232 33.2
CANSAT54G2555 Cannabis sativa HOM05D002619 ORTHO05D002804 1.2e-12 77.8 246 34.1
Gorai.013G265500 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.2e-12 77.8 238 37.8
Nitab4.5_0000610g0280 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.2e-12 77.8 229 35.4
Nitab4.5_0003179g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.2e-12 77.8 278 32.4
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 1.5e-12 77.4 263 36.5
Nitab4.5_0000610g0270 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.5e-12 77.4 247 32.4
CSS0041199 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 2.0e-12 77.0 231 37.2
MELO3C013675.2 Cucumis melo HOM05D002619 ORTHO05D002804 2.0e-12 77.0 249 38.6
CiPaw.14G072600 Carya illinoinensis HOM05D002619 ORTHO05D002804 2.6e-12 76.6 226 39.4
PGSC0003DMG400015561 Solanum tuberosum HOM05D002619 ORTHO05D002804 2.6e-12 76.6 242 32.2
Actinidia03780 Actinidia chinensis HOM05D002619 ORTHO05D002804 4.4e-12 75.9 243 38.3
CsaV3_6G022160 Cucumis sativus L. HOM05D002619 ORTHO05D002804 4.4e-12 75.9 249 37.8
CiPaw.13G099700 Carya illinoinensis HOM05D002619 ORTHO05D002804 5.8e-12 75.5 249 37.8
ClCG02G020460 Citrullus lanatus HOM05D002619 ORTHO05D002804 7.5e-12 75.1 237 39.7
CsaV3_1G033710 Cucumis sativus L. HOM05D002619 ORTHO05D002804 7.5e-12 75.1 244 37.3
Nitab4.5_0000610g0250 Nicotiana tabacum HOM05D002619 ORTHO05D002804 7.5e-12 75.1 232 33.2
Potri.001G235200 Populus trichocarpa HOM05D002619 ORTHO05D002804 7.5e-12 75.1 238 32.4
QL01p033488 Quercus lobata HOM05D002619 ORTHO05D002804 7.5e-12 75.1 306 33.0
Sed0021945 Sechium edule HOM05D002619 ORTHO05D002804 7.5e-12 75.1 253 35.2
Sed0011374 Sechium edule HOM05D002619 ORTHO05D002804 9.8e-12 74.7 241 39.0
Eucgr.B02404 Eucalyptus grandis HOM05D002619 ORTHO05D002804 1.3e-11 74.3 231 33.8
Gohir.D03G130000 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.7e-11 73.9 268 31.0
Hma1.2p1_0035F.1_g022040 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 1.7e-11 73.9 254 35.4
Potri.009G027100 Populus trichocarpa HOM05D002619 ORTHO05D002804 1.7e-11 73.9 265 31.7
Nitab4.5_0003179g0040 Nicotiana tabacum HOM05D002619 ORTHO05D002804 2.9e-11 73.2 238 31.9
Sed0024909 Sechium edule HOM05D002619 ORTHO05D002804 2.9e-11 73.2 268 30.2
MELO3C020695.2 Cucumis melo HOM05D002619 ORTHO05D002804 4.9e-11 72.4 221 38.0
Prupe.6G085300 Prunus persica HOM05D002619 ORTHO05D002804 4.9e-11 72.4 232 38.4
TAR623G0548 Trochodendron aralioides HOM05D002619 ORTHO05D002804 8.3e-11 71.6 241 35.3
Lsat_1_v5_gn_5_166460 Lactuca sativa HOM05D002619 ORTHO05D002804 1.4e-10 70.9 213 36.2
Nitab4.5_0000070g0090 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.4e-10 70.9 236 35.2
Potri.006G256801 Populus trichocarpa HOM05D002619 ORTHO05D002804 1.4e-10 70.9 279 34.1
CAN.G241.40 Capsicum annuum HOM05D002619 ORTHO05D002804 1.9e-10 70.5 252 35.7
Duzib150G0531 Durio zibethinus HOM05D002619 ORTHO05D002804 1.9e-10 70.5 214 40.7
Duzib168G0755 Durio zibethinus HOM05D002619 ORTHO05D002804 2.4e-10 70.1 212 37.3
Oeu040288.1 Olea europaea HOM05D002619 ORTHO05D002804 2.4e-10 70.1 206 36.9
Peaxi162Scf00406g00007 Petunia axillaris HOM05D002619 ORTHO05D002804 3.2e-10 69.7 213 32.9
Sabra06G0201000 Salix brachista HOM05D002619 ORTHO05D002804 3.2e-10 69.7 285 29.1
TWI79G1700 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 3.2e-10 69.7 248 33.9
TAR633G1544 Trochodendron aralioides HOM05D002619 ORTHO05D002804 3.2e-10 69.7 242 36.8
Gorai.003G136700 Gossypium raimondii HOM05D002619 ORTHO05D002804 4.1e-10 69.3 268 30.6
Nitab4.5_0011620g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 4.1e-10 69.3 247 34.4
ECA248G0080 Erigeron canadensis HOM05D002619 ORTHO05D002804 5.4e-10 68.9 226 36.3
Eucgr.B00641 Eucalyptus grandis HOM05D002619 ORTHO05D002804 5.4e-10 68.9 216 37.0
MBI14_g29800_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 7.0e-10 68.6 262 35.9
Gorai.001G107800 Gossypium raimondii HOM05D002619 ORTHO05D002804 1.6e-09 67.4 160 38.8
MSTRG.21180 Avicennia marina HOM05D002619 ORTHO05D002804 2.0e-09 67.0 216 37.5
Sopen06g001280 Solanum pennellii HOM05D002619 ORTHO05D002804 2.0e-09 67.0 216 36.6
Sabra06G0200800 Salix brachista HOM05D002619 ORTHO05D002804 2.7e-09 66.6 218 30.7
SalBow2G0511 Salvia bowleyana HOM05D002619 ORTHO05D002804 2.7e-09 66.6 229 35.4
TWI31G0042 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 3.5e-09 66.2 251 29.1
MSTRG.12631 Avicennia marina HOM05D002619 ORTHO05D002804 4.6e-09 65.9 198 33.3
Lj1A161T60 Lonicera japonica HOM05D002619 ORTHO05D002804 4.6e-09 65.9 174 35.1
Sabra16G0141400 Salix brachista HOM05D002619 ORTHO05D002804 4.6e-09 65.9 227 35.7
MD03G1100400 Malus domestica HOM05D002619 ORTHO05D002804 6.0e-09 65.5 230 34.8
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 7.8e-09 65.1 198 37.9
Gohir.D07G099900 Gossypium hirsutum HOM05D002619 ORTHO05D002804 7.8e-09 65.1 163 38.0
Manes.04G030300 Manihot esculenta HOM05D002619 ORTHO05D002804 7.8e-09 65.1 208 35.6
CDE02G0555 Ceratophyllum demersum HOM05D002619 ORTHO05D002804 1.0e-08 64.7 247 36.0
Ciclev10029033m.g Citrus clementina HOM05D002619 ORTHO05D002804 1.0e-08 64.7 278 34.9
SGA_v2.0_scaffold81G26088 Striga asiatica HOM05D002619 ORTHO05D002804 1.0e-08 64.7 218 31.2
Solyc06g005300.4 Solanum lycopersicum HOM05D002619 ORTHO05D002804 1.3e-08 64.3 240 35.0
Nn2g10492 Nelumbo nucifera HOM05D002619 ORTHO05D002804 1.7e-08 63.9 240 35.8
PSO206G0036 Papaver somniferum HOM05D002619 ORTHO05D002804 1.7e-08 63.9 254 34.3
Migut.N02660 Erythranthe guttata HOM05D002619 ORTHO05D002804 3.0e-08 63.2 215 32.6
PGSC0003DMG400010881 Solanum tuberosum HOM05D002619 ORTHO05D002804 3.0e-08 63.2 250 33.6
vmacro03117 Vaccinium macrocarpon HOM05D002619 ORTHO05D002804 3.0e-08 63.2 267 32.6
MD11G1114400 Malus domestica HOM05D002619 ORTHO05D002804 6.6e-08 62.0 229 33.6
PGR102G0064 Punica granatum HOM05D002619 ORTHO05D002804 6.6e-08 62.0 212 34.4
Aqoxy4G03023 Aquilegia oxysepala HOM05D002619 ORTHO05D002804 8.6e-08 61.6 272 28.7
Hma1.2p1_0846F.1_g227640 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 8.6e-08 61.6 256 34.0
CDE09G0663 Ceratophyllum demersum HOM05D002619 ORTHO05D002920 1.5e-07 60.8 176 40.3
Cc01_g04170 Coffea canephora HOM05D002619 ORTHO05D002804 1.5e-07 60.8 271 29.2
PSO339G4672 Papaver somniferum HOM05D002619 ORTHO05D002804 2.5e-07 60.1 253 34.0
Atru.chr3.3814 Acer truncatum HOM05D002619 ORTHO05D002804 3.3e-07 59.7 277 31.0
RcHm_v2.0_Chr5g0062781 Rosa chinensis HOM05D002619 ORTHO05D002804 3.3e-07 59.7 236 30.1
Sabra18G0027500 Salix brachista HOM05D002619 ORTHO05D002804 3.3e-07 59.7 295 30.8
arahy.Tifrunner.gnm1.ann1.6E5JYA Arachis hypogaea HOM05D002619 ORTHO05D002804 5.6e-07 58.9 245 31.8
Thhalv10017900m.g Eutrema salsugineum HOM05D002307 ORTHO05D002378 5.6e-07 58.9 191 36.6
MBI05_g38495_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 5.6e-07 58.9 255 34.5
BraA03t10405Z Brassica rapa HOM05D002307 ORTHO05D002378 7.3e-07 58.5 194 36.1
Oeu062318.1 Olea europaea HOM05D002619 ORTHO05D002804 7.3e-07 58.5 225 30.7
BcaB01g04687 Brassica carinata HOM05D002307 ORTHO05D002378 9.5e-07 58.2 194 37.1
AUR62009629 Chenopodium quinoa HOM05D002619 ORTHO05D002804 9.5e-07 58.2 210 31.0
Rhsim01G0224500 Rhododendron simsii HOM05D002619 ORTHO05D002804 9.5e-07 58.2 254 38.2
Hund18942 Selenicereus undatus HOM05D002619 ORTHO05D002804 9.5e-07 58.2 222 29.7
Gohir.A07G095600 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.2e-06 57.8 145 35.9
Oeu041011.1 Olea europaea HOM05D002619 ORTHO05D002804 1.2e-06 57.8 196 32.1
Peaxi162Scf00356g00031 Petunia axillaris HOM05D002619 ORTHO05D002804 1.2e-06 57.8 236 34.3
arahy.Tifrunner.gnm1.ann1.S371Q2 Arachis hypogaea HOM05D002619 ORTHO05D002804 1.6e-06 57.4 239 32.2
HanXRQChr11g0340291 Helianthus annuus HOM05D002619 ORTHO05D002804 1.6e-06 57.4 212 28.8
Carub.0004s0894 Capsella rubella HOM05D002307 ORTHO05D002378 2.1e-06 57.0 191 33.5
BcaC01g06562 Brassica carinata HOM05D002307 ORTHO05D002378 2.8e-06 56.6 194 35.6
C03p12610 Brassica napus HOM05D002307 ORTHO05D002378 2.8e-06 56.6 194 35.6
BolC3t13729H Brassica oleracea HOM05D002307 ORTHO05D002378 2.8e-06 56.6 194 35.6
TWI59G0134 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 2.8e-06 56.6 224 34.8
Ah.11g044750 Amaranthus hybridus HOM05D002307 ORTHO05D002378 4.7e-06 55.8 198 35.9
EL10Ac7g15959 Beta vulgaris HOM05D002619 ORTHO05D002804 4.7e-06 55.8 231 28.1
Carub.0005s1068 Capsella rubella HOM05D002307 ORTHO05D002378 4.7e-06 55.8 200 33.5
FAN11G0006 Fragaria x ananassa HOM05D002619 ORTHO05D002804 4.7e-06 55.8 236 33.5
FAN21G0578 Fragaria x ananassa HOM05D002619 ORTHO05D002804 4.7e-06 55.8 236 34.3
TPR.G34317 Trifolium pratense HOM05D002619 ORTHO05D002804 4.7e-06 55.8 243 31.7
AUR62001841 Chenopodium quinoa HOM05D002619 ORTHO05D002804 6.2e-06 55.5 240 27.1
Glyma.15G041400 Glycine max HOM05D002619 ORTHO05D002804 6.2e-06 55.5 216 31.9
SalBow1G2722 Salvia bowleyana HOM05D002619 ORTHO05D002804 8.1e-06 55.1 181 31.5
SalBow3G1374 Salvia bowleyana HOM05D002619 ORTHO05D002804 8.1e-06 55.1 181 31.5


User provided reference genes

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