Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2019 Capsella rubella HOM05D008503 ORTHO05D001075 1.8e-54 216.1 149 100.0
Sp6g21220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 3.1e-41 172.2 151 74.8
BcaC04g19763 Brassica carinata HOM05D008503 ORTHO05D001075 1.9e-38 162.9 150 74.0
C09p51910 Brassica napus HOM05D008503 ORTHO05D001075 1.9e-38 162.9 150 74.0
BolC9t58054H Brassica oleracea HOM05D008503 ORTHO05D001075 1.9e-38 162.9 150 74.0
AT5G59510 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 4.1e-38 161.8 148 81.8
A10p16720 Brassica napus HOM05D008503 ORTHO05D001075 2.1e-37 159.5 150 84.0
BraA10t43753Z Brassica rapa HOM05D008503 ORTHO05D001075 2.1e-37 159.5 150 78.7
Thhalv10014947m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 2.3e-36 156.0 152 79.6
CARHR285880 Cardamine hirsuta HOM05D008503 ORTHO05D001075 1.1e-30 137.1 149 75.2
BcaB08g36251 Brassica carinata HOM05D008503 ORTHO05D001075 6.0e-29 131.3 150 65.3
BcaB05g22516 Brassica carinata HOM05D008503 ORTHO05D001075 6.2e-26 121.3 150 62.7
BraA02t05789Z Brassica rapa HOM05D008503 ORTHO05D001075 5.2e-25 118.2 150 65.3
A02p07090 Brassica napus HOM05D008503 ORTHO05D001075 1.5e-24 116.7 150 64.7
BcaC03g14006 Brassica carinata HOM05D008503 ORTHO05D001075 1.7e-23 113.2 150 67.3
C02p12440 Brassica napus HOM05D008503 ORTHO05D001075 1.7e-23 113.2 150 67.3
BolC2t07344H Brassica oleracea HOM05D008503 ORTHO05D001075 3.8e-23 112.1 150 67.3
AT3G46613 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 1.4e-22 110.2 151 66.9
C01p33250 Brassica napus HOM05D008503 ORTHO05D001075 4.0e-17 92.0 155 50.3
BcaC09g49758 Brassica carinata HOM05D008503 ORTHO05D001075 1.2e-16 90.5 165 53.3
CARHR155200 Cardamine hirsuta HOM05D008503 ORTHO05D001075 2.2e-15 86.3 123 55.3
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 3.8e-15 85.5 156 39.1
BcaB05g23545 Brassica carinata HOM05D008503 ORTHO05D001075 1.1e-14 84.0 69 66.7
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.2e-13 80.5 80 56.2
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.2e-13 80.5 80 56.2
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 2.1e-13 79.7 72 55.6
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 1.8e-12 76.6 145 40.0
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 6.7e-12 74.7 50 68.0
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-11 73.6 44 68.2
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.5e-11 73.6 44 68.2
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.5e-11 73.6 44 68.2
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 3.3e-11 72.4 147 36.7
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 5.6e-11 71.6 159 36.5
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 5.6e-11 71.6 141 35.5
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 7.4e-11 71.2 48 66.7
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 1.3e-10 70.5 145 40.0
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 1.6e-10 70.1 144 37.5
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 2.1e-10 69.7 148 36.5
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 2.1e-10 69.7 148 36.5
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 2.1e-10 69.7 77 51.9
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 4.8e-10 68.6 51 60.8
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 1.1e-09 67.4 83 45.8
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 4.0e-09 65.5 76 52.6
Ah.15g098480 Amaranthus hybridus HOM05D001415 ORTHO05D001075 2.6e-08 62.8 67 49.3
A09p66390 Brassica napus HOM05D008503 ORTHO05D001075 2.6e-08 62.8 72 47.2
BraA09t41975Z Brassica rapa HOM05D008503 ORTHO05D001075 2.6e-08 62.8 72 47.2
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 3.4e-08 62.4 50 60.0
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 3.4e-08 62.4 32 75.0
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 4.5e-08 62.0 39 61.5
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 4.5e-08 62.0 50 52.0
PGR119G1246 Punica granatum HOM05D008503 ORTHO05D001075 5.8e-08 61.6 146 34.2
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 5.8e-08 61.6 55 49.1
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 5.8e-08 61.6 46 52.2
THA.LOC104800681 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 5.8e-08 61.6 43 65.1
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 7.6e-08 61.2 50 52.0
Thhalv10017949m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 7.6e-08 61.2 154 32.5
Phvul.011G062700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 7.6e-08 61.2 33 69.7
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 7.6e-08 61.2 37 64.9
BcaB06g28285 Brassica carinata HOM05D001415 ORTHO05D001075 9.9e-08 60.8 148 32.4
BcaB06g28286 Brassica carinata HOM05D001415 ORTHO05D001075 9.9e-08 60.8 148 32.4
Eucgr.B02318 Eucalyptus grandis HOM05D008503 ORTHO05D001075 9.9e-08 60.8 38 65.8
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 9.9e-08 60.8 75 48.0
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 1.3e-07 60.5 34 67.6
CsaV3_1G034460 Cucumis sativus L. HOM05D001415 ORTHO05D001075 1.3e-07 60.5 44 63.6
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.3e-07 60.5 34 67.6
BcaC02g08109 Brassica carinata HOM05D001415 ORTHO05D001075 1.7e-07 60.1 76 44.7
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 2.2e-07 59.7 33 72.7
ClCG03G001360 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.2e-07 59.7 45 60.0
Oeu045612.1 Olea europaea HOM05D001415 ORTHO05D001075 2.2e-07 59.7 67 50.7
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 2.2e-07 59.7 145 34.5
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.9e-07 59.3 53 54.7
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.9e-07 59.3 145 35.9
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.9e-07 59.3 145 35.9
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 2.9e-07 59.3 145 35.9
THA.LOC104826316 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 2.9e-07 59.3 71 45.1
Lalb_Chr01g0003531 Lupinus albus HOM05D008503 ORTHO05D001075 3.8e-07 58.9 32 71.9
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.9e-07 58.5 33 66.7
AT1G07490 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 6.4e-07 58.2 59 47.5
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 8.4e-07 57.8 32 68.8
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 8.4e-07 57.8 33 66.7
HanXRQChr11g0327601 Helianthus annuus HOM05D001415 ORTHO05D001075 8.4e-07 57.8 38 63.2
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.1e-06 57.4 33 66.7
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 1.1e-06 57.4 34 64.7
Carub.0004s1014 Capsella rubella HOM05D008503 ORTHO05D001075 1.4e-06 57.0 149 30.9
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 1.4e-06 57.0 145 31.7
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.4e-06 57.0 40 57.5
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.4e-06 57.0 40 57.5
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.4e-06 57.0 40 57.5
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 1.9e-06 56.6 75 44.0
PGR102G0519 Punica granatum HOM05D001415 ORTHO05D001075 1.9e-06 56.6 33 66.7
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 2.4e-06 56.2 53 52.8
Sp1g06220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 3.2e-06 55.8 33 66.7
HanXRQChr01g0027111 Helianthus annuus HOM05D008503 ORTHO05D001075 4.2e-06 55.5 44 56.8
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 4.2e-06 55.5 55 45.5
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 4.2e-06 55.5 93 39.8
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 5.5e-06 55.1 53 47.2
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 5.5e-06 55.1 31 64.5
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 5.5e-06 55.1 31 64.5
A08p35630 Brassica napus HOM05D008503 ORTHO05D001075 7.1e-06 54.7 69 46.4
C08p03100 Brassica napus HOM05D008503 ORTHO05D001075 7.1e-06 54.7 69 46.4
BraA08t35469Z Brassica rapa HOM05D008503 ORTHO05D001075 7.1e-06 54.7 69 46.4
CARHR122420 Cardamine hirsuta HOM05D008503 ORTHO05D001075 7.1e-06 54.7 32 65.6
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 7.1e-06 54.7 55 47.3
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 7.1e-06 54.7 83 43.4
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 7.1e-06 54.7 82 41.5
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 7.1e-06 54.7 55 45.5
BcaC07g42471 Brassica carinata HOM05D008503 ORTHO05D001075 9.3e-06 54.3 32 65.6
MBI18_g23947_MAGBIO Magnolia biondii HOM05D008503 ORTHO05D010842 9.3e-06 54.3 37 62.2
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 9.3e-06 54.3 53 47.2
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 9.3e-06 54.3 53 47.2
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 9.3e-06 54.3 67 46.3
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 9.3e-06 54.3 84 40.5


User provided reference genes

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