Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 8.9e-229 796.6 399 100.0
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 8.1e-206 720.3 399 90.0
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 4.2e-202 708.0 399 88.2
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 6.0e-201 704.1 399 87.0
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 2.4e-197 692.2 399 86.5
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 1.3e-195 686.4 399 86.5
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 3.7e-182 641.7 399 81.0
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 3.7e-182 641.7 399 81.0
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 3.7e-182 641.7 399 81.0
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 5.3e-181 637.9 399 81.0
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 6.9e-181 637.5 399 80.5
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 2.2e-179 632.5 399 79.2
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 2.2e-179 632.5 399 79.9
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 7.4e-159 564.3 397 71.5
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 6.7e-152 541.2 401 70.3
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 7.5e-135 484.6 403 62.5
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 4.5e-132 475.3 403 61.3
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 5.5e-130 468.4 404 61.9
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 1.2e-129 467.2 398 61.1
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 3.6e-129 465.7 391 61.1
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 4.7e-129 465.3 405 60.2
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 1.8e-128 463.4 390 61.0
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 3.4e-127 459.1 400 60.8
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 3.4e-127 459.1 348 65.2
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 5.7e-127 458.4 399 59.9
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 1.3e-126 457.2 401 59.6
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 1.7e-126 456.8 400 60.8
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 2.8e-126 456.1 401 59.6
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 3.7e-126 455.7 404 59.9
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 3.7e-126 455.7 408 58.3
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 4.9e-126 455.3 399 58.4
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 6.3e-126 454.9 324 67.3
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 6.3e-126 454.9 395 60.8
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 3.1e-125 452.6 389 60.4
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 4.1e-125 452.2 400 59.2
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 1.6e-124 450.3 400 61.5
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 2.0e-124 449.9 343 64.4
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 4.5e-124 448.7 325 67.7
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 7.7e-124 448.0 412 59.2
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 2.3e-123 446.4 399 58.6
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 2.9e-123 446.0 384 61.5
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 2.1e-121 439.9 383 59.3
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 4.7e-121 438.7 408 57.8
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 2.3e-120 436.4 403 56.8
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 3.0e-120 436.0 394 57.6
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 5.2e-120 435.3 323 67.5
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 4.4e-119 432.2 331 64.7
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 2.2e-118 429.9 397 56.4
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 2.2e-118 429.9 382 59.2
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 1.1e-117 427.6 411 56.4
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 3.2e-117 426.0 397 59.4
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 7.0e-117 424.9 388 57.2
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 4.6e-116 422.2 325 65.5
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 8.6e-115 417.9 307 67.4
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 8.6e-115 417.9 382 58.9
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 1.5e-114 417.2 379 57.8
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 2.5e-114 416.4 322 64.9
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 4.3e-114 415.6 389 57.1
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 7.3e-114 414.8 412 55.3
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 1.2e-113 414.1 404 53.2
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 1.6e-113 413.7 384 57.0
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 1.6e-113 413.7 417 51.8
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 3.6e-113 412.5 365 59.2
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 4.7e-113 412.1 418 51.4
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 8.0e-113 411.4 389 57.3
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 1.4e-112 410.6 409 54.8
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 6.8e-112 408.3 407 54.5
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 6.8e-112 408.3 380 54.2
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 1.2e-111 407.5 404 54.7
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 2.0e-111 406.8 288 66.3
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 2.6e-111 406.4 321 63.2
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 7.5e-111 404.8 389 54.2
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 7.5e-111 404.8 380 57.1
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 4.9e-110 402.1 380 53.4
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 4.9e-110 402.1 269 69.1
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 4.9e-110 402.1 402 54.7
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 1.9e-109 400.2 245 75.1
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 1.9e-109 400.2 377 56.2
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 1.9e-109 400.2 407 54.3
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 2.7e-108 396.4 402 54.2
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 4.6e-108 395.6 380 56.1
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 5.6e-106 388.7 323 58.5
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 9.5e-106 387.9 380 55.3
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 5.8e-103 378.6 316 57.3
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 6.4e-102 375.2 289 64.4
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 1.1e-101 374.4 303 61.1
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 1.2e-100 370.9 250 69.2
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 6.0e-100 368.6 370 53.2
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 4.3e-98 362.5 404 49.8
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 5.6e-98 362.1 382 51.6
Gohir.D05G094600 Gossypium hirsutum HOM05D006754 ORTHO05D008403 7.6e-95 351.7 327 57.2
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 1.1e-93 347.8 400 49.2
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 2.4e-88 330.1 215 71.6
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 2.0e-87 327.0 324 54.0
Oeu004165.1 Olea europaea HOM05D006754 ORTHO05D008403 2.1e-84 317.0 251 63.7
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 9.3e-69 265.0 401 41.9
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 2.3e-59 233.8 150 71.3
GSVIVG01024926001 Vitis vinifera HOM05D006754 ORTHO05D008403 2.3e-59 233.8 356 40.7
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 1.5e-55 221.1 131 80.9
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 1.5e-55 221.1 131 80.9
Pp3c1_41830 Physcomitrium patens HOM05D006754 ORTHO05D008403 1.9e-50 204.1 311 36.7
Mapoly0044s0017 Marchantia polymorpha HOM05D006754 ORTHO05D008403 4.5e-47 193.0 274 38.3
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 5.9e-47 192.6 157 63.1
AagrBONN_evm.TU.Sc2ySwM_368.2585 Anthoceros agrestis HOM05D006754 ORTHO05D008403 7.9e-44 182.2 298 36.9
HPP92_027965 Vanilla planifolia HOM05D006754 ORTHO05D008403 6.7e-43 179.1 178 53.4
SMO356G0015 Selaginella moellendorffii HOM05D006754 ORTHO05D008403 2.8e-41 173.7 265 37.4
Nn4g26458 Nelumbo nucifera HOM05D006754 ORTHO05D008403 5.0e-38 162.9 119 64.7
MD11G1097300 Malus domestica HOM05D006754 ORTHO05D008403 8.5e-38 162.2 139 59.0
Aqoxy2G02265 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 3.1e-32 143.7 197 45.2
CBR_g46210 Chara braunii HOM05D006754 ORTHO05D008403 7.0e-32 142.5 288 34.4
Dinv06263 Davidia involucrata HOM05D006754 ORTHO05D008403 7.2e-29 132.5 96 69.8
HPP92_001678 Vanilla planifolia HOM05D006754 ORTHO05D008403 1.4e-19 101.7 112 45.5
BcaC03g14007 Brassica carinata HOM05D006754 ORTHO05D008403 1.2e-15 88.6 94 59.6
C02p12450 Brassica napus HOM05D006754 ORTHO05D008403 1.0e-14 85.5 92 58.7
SEGI_33641 Sequoiadendron giganteum HOM05D006754 ORTHO05D008403 7.2e-13 79.3 208 27.9
Cre01.g049750 Chlamydomonas reinhardtii HOM05D006754 ORTHO05D008403 1.3e-09 68.6 215 29.3


User provided reference genes

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