Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.8e-128 462.6 240 100.0
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 3.1e-112 408.7 240 87.1
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.0e-107 393.7 240 81.7
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 8.8e-107 390.6 243 81.5
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-99 366.7 240 77.1
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.4e-99 366.7 240 77.1
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 3.0e-99 365.5 240 76.7
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 5.2e-99 364.8 240 77.1
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.5e-98 363.2 240 76.7
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 2.0e-98 362.8 240 77.5
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 3.5e-95 352.1 224 77.7
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 3.8e-94 348.6 236 72.9
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 4.3e-93 345.1 232 73.3
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 5.6e-93 344.7 224 75.4
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 9.5e-93 344.0 224 75.4
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 2.1e-92 342.8 224 75.0
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.8e-92 342.4 224 74.6
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 4.7e-92 341.7 224 74.6
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 4.7e-92 341.7 224 74.6
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.4e-91 340.1 234 73.1
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 4.0e-91 338.6 235 72.3
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 5.2e-91 338.2 234 72.6
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 8.9e-91 337.4 234 72.6
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 1.5e-90 336.7 234 72.2
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 6.4e-89 331.3 234 70.1
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 1.4e-88 330.1 235 69.8
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.4e-88 329.3 237 70.0
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.2e-88 328.9 240 71.2
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 4.1e-88 328.6 233 69.5
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.7e-87 325.9 235 68.9
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 4.6e-87 325.1 241 67.6
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 7.8e-87 324.3 223 70.4
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.0e-86 323.9 223 70.4
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.0e-86 323.9 235 68.5
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 3.0e-86 322.4 233 69.1
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 3.0e-86 322.4 233 68.7
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 3.0e-86 322.4 233 68.2
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 3.9e-86 322.0 235 67.2
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 3.9e-86 322.0 235 68.1
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 5.0e-86 321.6 234 68.8
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 6.6e-86 321.2 224 70.5
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 8.6e-86 320.9 235 67.7
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 8.6e-86 320.9 235 67.7
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.5e-85 320.1 233 67.8
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 1.9e-85 319.7 232 65.9
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 2.5e-85 319.3 233 67.8
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 2.5e-85 319.3 233 68.2
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.5e-85 319.3 235 67.2
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 4.3e-85 318.5 237 67.1
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 5.6e-85 318.2 235 68.9
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 5.6e-85 318.2 234 67.1
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 7.3e-85 317.8 235 68.5
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 7.3e-85 317.8 233 67.8
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 7.3e-85 317.8 235 66.0
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 9.5e-85 317.4 233 68.7
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 1.6e-84 316.6 234 66.7
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 2.8e-84 315.8 235 65.5
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 4.7e-84 315.1 212 73.1
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 4.7e-84 315.1 234 66.2
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 4.7e-84 315.1 235 65.5
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 6.2e-84 314.7 233 67.0
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.0e-83 313.9 234 66.7
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 1.0e-83 313.9 233 67.0
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.8e-83 313.2 237 66.2
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 8.9e-83 310.8 236 66.1
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.0e-82 309.7 232 66.4
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 2.6e-82 309.3 236 66.1
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 4.4e-82 308.5 259 60.2
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 1.3e-81 307.0 235 66.4
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.3e-81 307.0 231 64.5
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 1.3e-81 307.0 237 66.2
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 4.1e-80 302.0 235 63.0
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 4.1e-80 302.0 235 64.7
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 9.2e-80 300.8 201 72.6
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 2.0e-79 299.7 235 63.8
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 6.0e-79 298.1 271 57.9
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 6.0e-79 298.1 224 61.2
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.3e-78 297.0 201 73.1
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.7e-78 296.6 280 56.4
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 3.9e-78 295.4 224 66.1
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 6.6e-78 294.7 219 67.1
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.1e-77 293.9 233 62.7
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.5e-77 293.5 210 70.5
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 4.3e-77 292.0 235 63.0
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.6e-76 290.0 234 59.8
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.8e-75 286.6 230 63.0
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 3.1e-75 285.8 234 59.4
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 6.8e-75 284.6 235 63.8
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.5e-74 283.5 206 68.0
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 2.0e-74 283.1 235 60.0
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.9e-73 279.3 209 65.6
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 6.4e-73 278.1 229 60.7
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 6.4e-73 278.1 220 63.2
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.9e-72 276.6 235 58.3
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 3.2e-72 275.8 233 61.8
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 3.2e-72 275.8 233 61.8
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 4.1e-72 275.4 236 58.1
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 7.1e-72 274.6 187 70.1
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 2.1e-71 273.1 201 66.2
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.5e-71 272.3 218 63.3
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.0e-70 270.8 232 60.8
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.7e-70 270.0 225 60.9
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.7e-70 270.0 196 66.3
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.3e-70 269.6 229 60.7
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 5.1e-70 268.5 203 66.5
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.1e-69 267.3 261 55.9
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.5e-69 266.9 237 55.7
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.5e-69 266.2 202 65.8
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 2.9e-65 252.7 223 53.4
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 2.4e-64 249.6 167 71.9
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 5.4e-64 248.4 166 71.1
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.1e-63 246.5 224 51.8
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 1.0e-62 244.2 187 65.2
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.3e-62 243.8 227 53.7
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.1e-61 240.7 191 60.7
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 4.3e-61 238.8 151 81.5
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 2.1e-60 236.5 166 71.7
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.1e-60 236.5 203 62.1
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 3.6e-60 235.7 135 87.4
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.8e-58 228.4 230 54.8
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 1.3e-57 227.3 217 53.9
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 2.4e-56 223.0 226 51.3
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.5e-55 219.2 237 52.7
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 4.6e-55 218.8 147 72.1
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 1.3e-52 210.7 151 68.2
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.8e-52 208.8 201 56.2
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 2.1e-47 193.4 173 54.9
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 9.6e-45 184.5 126 70.6
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 5.8e-42 175.3 228 48.7
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 6.4e-41 171.8 150 63.3
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 9.0e-35 151.4 235 40.4
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 9.0e-35 151.4 106 69.8
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 1.2e-34 151.0 104 72.1
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 5.8e-34 148.7 102 69.6
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.7e-33 147.1 103 68.0
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 1.1e-32 144.4 103 66.0
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 1.2e-31 141.0 112 62.5
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 6.3e-28 128.6 262 34.7
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 5.3e-27 125.6 213 35.2
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.6e-26 123.2 232 33.6
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 6.5e-25 118.6 76 73.7
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.1e-19 101.3 226 31.4
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.1e-19 101.3 226 31.4
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 3.4e-18 96.3 96 59.4
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 1.4e-16 90.9 74 56.8
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 2.7e-15 86.7 49 83.7
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 4.7e-15 85.9 49 79.6
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.4e-13 79.3 203 28.6
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.7e-12 76.3 81 46.9
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 6.3e-12 75.5 48 83.3
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 1.8e-11 73.9 51 64.7
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 3.1e-11 73.2 64 56.2
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 3.1e-11 73.2 53 62.3
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 3.1e-11 73.2 51 64.7
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 3.4e-10 69.7 39 82.1


User provided reference genes

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