Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 7.1e-90 334.0 174 100.0
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 6.9e-77 290.8 177 88.7
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 3.2e-74 282.0 175 87.4
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 1.0e-72 276.9 177 87.0
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 6.7e-72 274.2 175 84.6
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 2.5e-63 245.7 177 78.5
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 3.7e-62 241.9 173 79.8
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 1.1e-61 240.4 179 77.7
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 1.4e-58 229.9 178 78.1
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 1.4e-58 229.9 178 78.1
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 1.4e-58 229.9 178 78.1
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 3.2e-58 228.8 178 77.5
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-57 226.9 177 76.8
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 6.7e-56 221.1 180 73.9
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 1.5e-55 219.9 177 74.0
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.5e-55 219.9 177 74.6
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 3.7e-54 215.3 183 67.8
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 3.2e-50 202.2 166 70.5
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.6e-47 192.6 184 63.6
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 3.5e-44 182.2 177 62.7
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 9.4e-42 174.1 149 71.1
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 6.1e-41 171.4 182 62.6
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 1.3e-38 163.7 176 62.5
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 1.3e-38 163.7 162 64.8
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 8.2e-38 161.0 184 57.1
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 3.1e-37 159.1 205 52.7
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 5.3e-37 158.3 176 61.4
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 1.3e-35 153.7 189 54.0
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 9.4e-34 147.5 131 68.7
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 9.4e-34 147.5 182 53.3
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 4.7e-33 145.2 187 52.4
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.1e-33 144.8 179 54.2
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 6.1e-33 144.8 177 54.8
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 8.0e-33 144.4 217 51.2
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.0e-32 144.1 177 52.0
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 1.4e-32 143.7 185 53.5
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 1.4e-32 143.7 187 49.7
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 1.8e-32 143.3 183 50.8
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 2.3e-32 142.9 185 51.4
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 4.0e-32 142.1 187 50.3
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 4.0e-32 142.1 190 52.1
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 5.2e-32 141.7 189 52.4
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 6.8e-32 141.4 181 49.2
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 8.8e-32 141.0 174 54.0
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.2e-31 140.6 133 66.2
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 2.0e-31 139.8 181 50.8
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.0e-31 139.8 185 49.2
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 2.0e-31 139.8 182 50.0
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 3.4e-31 139.0 186 50.5
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 5.7e-31 138.3 187 48.1
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 5.7e-31 138.3 187 48.1
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 5.7e-31 138.3 187 48.1
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 5.7e-31 138.3 176 51.7
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 9.8e-31 137.5 190 51.1
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.3e-30 137.1 188 52.1
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.3e-30 137.1 189 50.3
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.3e-30 137.1 187 50.8
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 2.8e-30 136.0 180 55.6
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 2.8e-30 136.0 186 48.4
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 8.3e-30 134.4 188 48.9
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 8.3e-30 134.4 187 49.2
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.1e-29 134.0 177 50.3
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.1e-29 134.0 177 50.3
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.4e-29 133.7 174 50.0
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 1.4e-29 133.7 184 50.0
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 1.4e-29 133.7 181 51.4
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 1.4e-29 133.7 182 46.7
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.8e-29 133.3 185 48.1
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 1.8e-29 133.3 182 50.5
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 2.4e-29 132.9 188 49.5
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 3.1e-29 132.5 177 50.3
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 3.1e-29 132.5 186 48.9
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 4.1e-29 132.1 177 48.6
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 4.1e-29 132.1 184 51.1
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 4.1e-29 132.1 186 48.4
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 5.4e-29 131.7 179 50.3
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 7.0e-29 131.3 191 48.2
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 7.0e-29 131.3 175 52.0
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.0e-29 131.3 185 47.6
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 9.1e-29 131.0 182 45.1
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 1.2e-28 130.6 179 49.7
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.2e-28 130.6 187 47.1
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 2.0e-28 129.8 186 49.5
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 2.0e-28 129.8 182 49.5
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 2.7e-28 129.4 181 45.9
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 5.9e-28 128.3 179 51.4
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 1.7e-27 126.7 182 48.4
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 1.5e-26 123.6 190 47.4
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 1.5e-26 123.6 178 47.8
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 1.9e-26 123.2 184 46.7
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.9e-26 123.2 187 44.9
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 2.5e-26 122.9 182 48.4
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.5e-26 122.9 185 46.5
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 4.2e-26 122.1 184 45.1
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.5e-26 121.7 190 45.3
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 9.5e-26 120.9 181 47.5
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 9.5e-26 120.9 183 45.9
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 1.2e-25 120.6 183 48.1
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 2.1e-25 119.8 177 43.5
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 4.7e-25 118.6 185 47.0
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 4.0e-24 115.5 185 43.8
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 4.0e-24 115.5 187 45.5
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 6.8e-24 114.8 184 45.1
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.8e-24 114.8 203 43.3
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 3.4e-23 112.5 107 61.7
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 4.4e-23 112.1 186 44.6
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 5.7e-23 111.7 185 42.2
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 5.7e-23 111.7 186 44.1
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 9.8e-23 110.9 206 42.7
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.3e-22 110.5 168 50.6
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 6.3e-22 108.2 182 45.1
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 1.1e-21 107.5 186 44.1
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.4e-21 107.1 194 40.2
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 3.1e-21 105.9 189 42.9
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 5.4e-21 105.1 169 49.1
BcaB01g04584 Brassica carinata HOM05D004998 ORTHO05D006104 9.2e-21 104.4 91 71.4
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 1.6e-20 103.6 185 41.6
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.3e-19 100.5 169 47.9
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 2.9e-19 99.4 226 36.3
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 8.6e-19 97.8 197 40.1
C01p49830 Brassica napus HOM05D004998 ORTHO05D006104 9.5e-18 94.4 75 72.0
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 1.6e-17 93.6 181 37.6
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 1.6e-17 93.6 99 57.6
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 1.0e-16 90.9 184 40.2
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 1.4e-16 90.5 75 62.7
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 4.0e-16 89.0 181 36.5
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 9.8e-15 84.3 188 39.4
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 6.4e-14 81.6 82 54.9
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.4e-13 80.5 185 36.2
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.8e-13 80.1 157 38.2
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 4.1e-13 79.0 126 44.4
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.7e-09 65.5 175 35.4
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.4e-08 63.9 181 34.8
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.4e-08 63.9 181 34.8
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.8e-08 61.6 118 38.1
A01p36350 Brassica napus HOM05D004998 ORTHO05D006104 2.0e-07 60.1 46 76.1
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 3.4e-07 59.3 99 40.4
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 7.5e-07 58.2 138 37.7
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 1.7e-06 57.0 140 37.1


User provided reference genes

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