Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.7e-67 259.2 132 100.0
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.3e-62 243.0 132 94.7
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 8.1e-62 240.4 132 94.7
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 4.0e-61 238.0 132 90.2
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 5.3e-61 237.7 132 91.7
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 6.9e-61 237.3 132 92.4
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 9.0e-61 236.9 132 90.2
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.2e-58 228.4 132 87.1
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.3e-56 222.2 132 87.9
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 5.1e-56 221.1 132 84.1
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 5.1e-56 221.1 132 83.3
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 5.1e-56 221.1 132 83.3
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 5.1e-56 221.1 132 83.3
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 6.7e-56 220.7 132 83.3
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 8.7e-56 220.3 133 85.0
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 5.6e-55 217.6 132 83.3
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.6e-55 217.6 132 82.6
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 5.6e-55 217.6 132 82.6
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.6e-54 216.1 132 79.5
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 2.1e-54 215.7 132 81.8
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.8e-54 215.3 132 81.1
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 3.7e-54 214.9 132 79.5
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 3.7e-54 214.9 133 81.2
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 3.7e-54 214.9 132 81.8
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 4.8e-54 214.5 132 83.3
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 4.8e-54 214.5 132 81.1
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 6.2e-54 214.2 132 81.1
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.1e-53 213.4 132 81.8
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 1.4e-53 213.0 132 79.5
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.8e-53 212.6 132 79.5
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.8e-53 212.6 133 81.2
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 1.8e-53 212.6 134 81.3
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.4e-53 212.2 132 79.5
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.4e-53 212.2 132 81.1
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 2.4e-53 212.2 131 80.2
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 3.1e-53 211.8 132 80.3
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.0e-53 211.5 132 79.5
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 4.0e-53 211.5 132 80.3
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 5.3e-53 211.1 132 80.3
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 5.3e-53 211.1 132 78.8
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 5.3e-53 211.1 132 77.3
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 6.9e-53 210.7 133 80.5
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 6.9e-53 210.7 132 79.5
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 6.9e-53 210.7 132 81.1
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.0e-52 209.1 132 80.3
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 2.0e-52 209.1 132 78.8
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 2.0e-52 209.1 132 78.8
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 2.0e-52 209.1 132 78.8
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.0e-52 209.1 133 78.9
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 2.0e-52 209.1 134 76.1
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 2.6e-52 208.8 132 80.3
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 2.6e-52 208.8 132 81.1
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 3.4e-52 208.4 133 79.7
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 3.4e-52 208.4 133 80.5
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 3.4e-52 208.4 134 78.4
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 4.5e-52 208.0 133 78.9
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 5.8e-52 207.6 132 76.5
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.8e-52 207.6 132 77.3
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 7.6e-52 207.2 134 77.6
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 7.6e-52 207.2 133 78.9
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 7.6e-52 207.2 134 77.6
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 9.9e-52 206.8 132 77.3
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 9.9e-52 206.8 132 77.3
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.7e-51 206.1 132 75.8
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 1.7e-51 206.1 132 79.5
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.7e-51 206.1 132 78.0
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 1.7e-51 206.1 132 78.0
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 2.2e-51 205.7 133 78.2
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 2.2e-51 205.7 133 77.4
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 2.2e-51 205.7 133 77.4
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 2.2e-51 205.7 133 78.2
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 2.9e-51 205.3 133 77.4
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 4.9e-51 204.5 132 78.0
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 4.9e-51 204.5 131 78.6
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 4.9e-51 204.5 132 77.3
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 6.4e-51 204.1 132 77.3
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 6.4e-51 204.1 133 78.2
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 8.4e-51 203.8 132 78.8
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 76.7
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 1.1e-50 203.4 132 75.0
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 77.4
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 1.9e-50 202.6 134 76.1
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 1.9e-50 202.6 129 77.5
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 1.9e-50 202.6 132 77.3
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 2.4e-50 202.2 134 76.9
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 2.4e-50 202.2 134 76.1
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 2.4e-50 202.2 134 76.1
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 2.4e-50 202.2 134 76.1
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 3.2e-50 201.8 134 75.4
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.2e-50 201.8 129 77.5
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 3.2e-50 201.8 133 77.4
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 4.2e-50 201.4 129 77.5
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 4.2e-50 201.4 129 77.5
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 4.2e-50 201.4 132 74.2
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 4.2e-50 201.4 132 74.2
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 5.5e-50 201.1 131 76.3
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 7.1e-50 200.7 132 76.5
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 7.1e-50 200.7 132 75.0
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 9.3e-50 200.3 132 75.0
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 9.3e-50 200.3 132 78.8
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 1.2e-49 199.9 129 76.0
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 1.2e-49 199.9 132 74.2
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.6e-49 199.5 132 73.5
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 2.1e-49 199.1 132 72.7
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 2.7e-49 198.7 132 74.2
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 3.5e-49 198.4 132 74.2
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 4.6e-49 198.0 132 72.7
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 4.6e-49 198.0 132 77.3
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 7.9e-49 197.2 128 75.8
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 7.9e-49 197.2 132 74.2
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 7.9e-49 197.2 132 73.5
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 2.3e-48 195.7 132 74.2
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 3.0e-48 195.3 132 72.7
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 3.9e-48 194.9 132 73.5
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 5.1e-48 194.5 128 76.6
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 5.1e-48 194.5 134 74.6
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 6.7e-48 194.1 132 72.7
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 1.1e-47 193.4 132 73.5
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 1.5e-47 193.0 128 75.0
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 1.9e-47 192.6 147 71.4
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 2.5e-47 192.2 124 77.4
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 2.5e-47 192.2 132 72.0
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 2.5e-47 192.2 115 80.0
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 2.5e-47 192.2 115 80.0
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 7.4e-47 190.7 119 78.2
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 7.4e-47 190.7 120 78.3
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 1.3e-46 189.9 125 72.8
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 1.6e-46 189.5 132 70.5
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 2.8e-46 188.7 132 71.2
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 3.7e-46 188.3 132 71.2
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 4.8e-46 188.0 132 67.4
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 6.2e-46 187.6 129 72.9
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 1.8e-45 186.0 125 71.2
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 5.3e-45 184.5 132 65.9
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 6.9e-45 184.1 125 76.0
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 1.2e-44 183.3 124 72.6
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 2.0e-44 182.6 121 75.2
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 3.4e-44 181.8 122 73.0
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 1.0e-43 180.3 140 69.3
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 2.2e-43 179.1 102 79.4
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 6.5e-43 177.6 132 67.4
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 1.6e-41 172.9 132 65.2
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 3.5e-41 171.8 122 69.7
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 1.1e-39 166.8 141 62.4
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 3.7e-38 161.8 132 59.8
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 8.2e-38 160.6 91 82.4
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.8e-37 159.5 113 68.1
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 1.8e-37 159.5 132 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 4.6e-33 144.8 132 57.6
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 1.3e-30 136.7 112 56.2
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.7e-27 126.3 85 75.3
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 2.9e-27 125.6 78 73.1
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 4.2e-26 121.7 79 74.7
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.0e-24 115.5 77 74.0
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 2.6e-23 112.5 81 70.4
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.1e-21 105.5 73 71.2
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.2e-20 103.6 77 66.2
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 1.9e-18 96.3 56 80.4
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 2.5e-18 95.9 60 80.0
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 7.2e-18 94.4 78 61.5
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 4.1e-13 78.6 50 74.0
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 6.5e-11 71.2 96 39.6
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 2.7e-09 65.9 45 64.4
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 5.2e-08 61.6 42 66.7


User provided reference genes

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