Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 2.4e-170 602.1 300 100.0
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 6.6e-160 567.4 301 94.4
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 3.1e-157 558.5 301 92.0
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 9.5e-151 537.0 307 89.6
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 2.0e-148 529.3 300 89.7
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 8.4e-147 523.9 305 87.9
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 2.4e-146 522.3 305 87.5
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 4.1e-146 521.5 305 87.5
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 4.1e-146 521.5 305 87.5
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 4.1e-146 521.5 305 87.5
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 2.5e-135 485.7 301 81.1
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 6.9e-125 451.1 299 78.3
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 2.1e-118 429.5 246 87.8
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 5.7e-103 378.3 297 65.7
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 6.9e-101 371.3 294 64.3
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 3.4e-100 369.0 299 64.9
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 7.7e-100 367.9 303 62.7
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 2.9e-99 365.9 301 64.5
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 5.0e-99 365.2 300 65.3
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 1.9e-98 363.2 300 65.0
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 1.9e-98 363.2 288 63.2
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 2.5e-98 362.8 288 63.2
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 6.1e-97 358.2 298 63.1
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 7.9e-97 357.8 297 62.6
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 7.9e-97 357.8 288 62.5
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.4e-96 357.1 300 62.0
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 1.4e-96 357.1 297 63.0
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 8.8e-96 354.4 294 62.6
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 2.5e-95 352.8 289 63.3
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 2.5e-95 352.8 293 63.1
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 9.7e-95 350.9 295 61.4
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.3e-94 350.5 303 61.7
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.8e-94 349.4 294 62.6
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 4.8e-94 348.6 295 62.7
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 2.4e-93 346.3 310 60.3
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 6.9e-93 344.7 290 63.4
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.5e-92 343.6 291 62.2
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.4e-92 342.4 334 56.9
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 4.5e-92 342.0 299 57.9
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 7.7e-92 341.3 309 57.6
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 3.8e-91 339.0 292 59.2
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 8.5e-91 337.8 268 63.1
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.1e-90 337.4 319 57.4
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 3.2e-90 335.9 290 59.3
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 7.2e-90 334.7 292 58.6
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 7.2e-90 334.7 292 59.6
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 1.2e-89 334.0 300 59.0
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.6e-89 333.6 285 58.9
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 2.1e-89 333.2 284 59.9
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 2.7e-89 332.8 294 61.6
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 4.7e-89 332.0 297 60.6
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 7.9e-89 331.3 334 54.5
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 1.0e-88 330.9 273 63.4
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.4e-88 330.5 282 59.2
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.4e-88 330.5 276 59.1
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 2.3e-88 329.7 238 65.1
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 2.3e-88 329.7 271 61.6
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 2.3e-88 329.7 292 59.2
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 3.0e-88 329.3 290 59.3
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.7e-88 328.2 303 57.1
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 8.8e-88 327.8 269 64.3
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.1e-87 327.4 341 54.3
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 7.4e-87 324.7 236 65.7
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 7.4e-87 324.7 274 61.7
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-86 323.9 286 57.7
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 2.2e-86 323.2 297 59.3
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 2.8e-86 322.8 290 57.9
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 8.2e-86 321.2 293 58.4
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 1.1e-85 320.9 287 57.8
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.8e-85 320.1 318 55.3
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.8e-85 320.1 332 55.4
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 7.0e-85 318.2 266 61.7
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 1.2e-84 317.4 244 63.9
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 2.0e-84 316.6 314 55.7
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 3.5e-84 315.8 287 57.1
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.7e-83 313.5 281 57.7
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.7e-83 313.5 262 59.5
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 6.5e-83 311.6 263 62.7
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 2.5e-82 309.7 290 55.5
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 1.6e-81 307.0 354 49.4
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 1.6e-81 307.0 271 60.9
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 3.6e-81 305.8 171 87.1
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 4.7e-81 305.4 214 68.7
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 4.7e-81 305.4 282 56.4
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 6.1e-81 305.1 295 55.3
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 2.3e-80 303.1 274 55.8
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 5.7e-79 298.5 298 56.0
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 7.5e-79 298.1 303 53.5
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 2.8e-78 296.2 302 53.6
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 3.7e-78 295.8 263 60.5
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 3.7e-78 295.8 263 60.5
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 2.4e-77 293.1 280 57.1
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 2.4e-77 293.1 280 57.1
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 2.4e-77 293.1 280 57.1
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 5.3e-77 292.0 317 54.3
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.9e-75 286.2 291 54.6
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 5.0e-75 285.4 298 53.4
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.5e-74 283.9 232 57.3
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 4.7e-73 278.9 235 58.3
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 8.0e-73 278.1 237 62.4
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 6.8e-72 275.0 283 54.1
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 4.4e-71 272.3 283 52.7
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.4e-69 266.5 325 47.7
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 5.0e-67 258.8 236 60.6
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 5.7e-63 245.4 445 37.3
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 1.7e-62 243.8 236 51.3
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 7.0e-61 238.4 182 62.6
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 2.0e-60 236.9 218 54.1
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 5.0e-59 232.3 251 52.6
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 1.8e-56 223.8 250 48.4
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.0e-56 223.0 240 47.9
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 5.4e-53 212.2 196 57.1
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.7e-51 207.2 232 46.6
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 4.3e-42 176.0 163 53.4
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 3.6e-41 172.9 176 54.0
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 1.2e-39 167.9 167 58.1
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 3.2e-37 159.8 118 65.3
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 3.5e-36 156.4 151 49.0
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 3.0e-35 153.3 137 57.7
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 3.0e-35 153.3 236 39.8
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 5.1e-35 152.5 112 61.6
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 3.1e-32 143.3 152 48.0
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.6e-31 140.2 114 59.6
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 5.8e-31 139.0 85 72.9
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.9e-29 134.0 86 72.1
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 5.4e-29 132.5 75 77.3
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 2.4e-24 117.1 75 74.7
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 2.4e-24 117.1 75 74.7
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.4e-24 117.1 75 74.7
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.0e-23 114.0 67 79.1
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 8.4e-22 108.6 96 54.2
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 4.8e-17 92.8 62 67.7
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 8.1e-17 92.0 133 41.4
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 1.1e-16 91.7 86 58.1
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 4.5e-15 86.3 76 57.9
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 2.2e-14 84.0 42 83.3
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 2.9e-14 83.6 62 66.1
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 3.8e-14 83.2 72 58.3
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.9e-13 80.9 44 77.3
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 5.4e-13 79.3 46 76.1
C03p13750 Brassica napus HOM05D005444 ORTHO05D042479 9.3e-13 78.6 44 86.4
BolC3t13825H Brassica oleracea HOM05D005444 ORTHO05D042479 9.3e-13 78.6 44 86.4
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.1e-09 65.5 187 28.3
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 3.4e-07 60.1 107 38.3
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 5.8e-07 59.3 198 26.3
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 7.6e-07 58.9 206 25.7
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.7e-06 57.8 82 40.2
BolC3t13820H Brassica oleracea HOM05D000021 ORTHO05D000010 8.4e-06 55.5 42 73.8


User provided reference genes

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