Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 2.0e-49 198.7 97 100.0
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 1.4e-47 192.6 97 97.9
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 1.4e-47 192.6 97 97.9
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 1.4e-47 192.6 97 97.9
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 1.4e-47 192.6 97 97.9
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 1.4e-47 192.6 97 97.9
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 1.9e-47 192.2 97 96.9
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 1.9e-47 192.2 97 96.9
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 1.9e-47 192.2 97 96.9
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 1.9e-47 192.2 97 96.9
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 1.9e-47 192.2 97 96.9
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 3.2e-47 191.4 97 96.9
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 4.1e-47 191.0 97 96.9
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 4.1e-47 191.0 97 96.9
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 4.6e-46 187.6 97 95.9
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 6.2e-43 177.2 95 90.5
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 1.1e-42 176.4 95 90.5
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 2.4e-42 175.3 88 95.5
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 5.2e-42 174.1 95 89.5
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 7.6e-41 170.2 95 84.2
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 1.7e-40 169.1 95 85.3
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 1.7e-40 169.1 95 85.3
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 2.9e-40 168.3 95 84.2
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 85.3
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 85.3
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 85.3
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 85.3
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 85.3
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 85.3
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 3.8e-40 167.9 95 84.2
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 4.9e-40 167.5 95 84.2
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 6.4e-40 167.2 152 62.5
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 1.1e-39 166.4 95 83.2
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 1.1e-39 166.4 95 84.2
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 1.4e-39 166.0 95 84.2
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 1.4e-39 166.0 95 84.2
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 1.9e-39 165.6 95 82.1
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 2.4e-39 165.2 95 83.2
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 2.4e-39 165.2 95 83.2
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 2.4e-39 165.2 95 83.2
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 2.4e-39 165.2 95 84.2
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 2.4e-39 165.2 95 83.2
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 3.2e-39 164.9 95 82.1
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 4.2e-39 164.5 95 82.1
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 4.2e-39 164.5 95 81.1
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 4.2e-39 164.5 95 82.1
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 5.4e-39 164.1 95 81.1
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 5.4e-39 164.1 95 81.1
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 5.4e-39 164.1 95 81.1
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 5.4e-39 164.1 95 81.1
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 9.3e-39 163.3 95 83.2
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 1.2e-38 162.9 95 82.1
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 1.2e-38 162.9 95 80.0
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 1.2e-38 162.9 95 80.0
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 1.6e-38 162.5 95 82.1
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 1.6e-38 162.5 95 83.2
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 1.6e-38 162.5 95 83.2
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 2.7e-38 161.8 95 80.0
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 3.5e-38 161.4 95 82.1
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 6.0e-38 160.6 95 82.1
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 1.0e-37 159.8 95 81.1
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 1.0e-37 159.8 95 80.0
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 1.3e-37 159.5 95 78.9
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 1.3e-37 159.5 95 77.9
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 1.3e-37 159.5 95 78.9
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 2.3e-37 158.7 96 78.1
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 2.3e-37 158.7 102 77.5
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 2.3e-37 158.7 95 81.1
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 2.3e-37 158.7 95 76.8
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 77.9
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 77.9
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 77.9
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 77.9
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 78.9
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 3.9e-37 157.9 95 77.9
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 5.1e-37 157.5 95 76.8
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 6.6e-37 157.1 86 89.5
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 6.6e-37 157.1 95 77.9
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 6.6e-37 157.1 95 78.9
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 8.7e-37 156.8 95 78.9
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 1.1e-36 156.4 95 78.9
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 1.1e-36 156.4 95 76.8
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 1.1e-36 156.4 95 78.9
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 1.1e-36 156.4 95 78.9
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 1.9e-36 155.6 95 80.0
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.9e-36 155.6 95 73.7
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 2.5e-36 155.2 95 78.9
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 2.5e-36 155.2 95 77.9
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 2.5e-36 155.2 95 74.7
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 2.5e-36 155.2 95 80.0
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 3.3e-36 154.8 94 79.8
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 4.3e-36 154.5 95 77.9
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 7.3e-36 153.7 95 78.9
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 7.3e-36 153.7 95 73.7
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 1.6e-35 152.5 95 75.8
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 2.1e-35 152.1 95 73.7
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 2.1e-35 152.1 95 74.7
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 3.6e-35 151.4 94 76.6
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 4.8e-35 151.0 95 74.7
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 6.2e-35 150.6 95 74.7
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 5.3e-34 147.5 84 82.1
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 6.9e-34 147.1 108 69.4
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 2.6e-33 145.2 95 73.7
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 6.4e-32 140.6 148 53.4
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 1.1e-31 139.8 136 56.6
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 9.3e-31 136.7 71 93.0
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 6.0e-30 134.0 96 71.9
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 7.4e-28 127.1 75 80.0
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 6.2e-27 124.0 95 64.2
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 1.5e-25 119.4 69 81.2
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 2.6e-25 118.6 99 56.6
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 1.7e-24 115.9 72 73.6
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 1.7e-24 115.9 92 60.9
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 4.9e-24 114.4 72 75.0
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 6.4e-24 114.0 69 75.4
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 8.4e-24 113.6 72 72.2
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 8.4e-24 113.6 74 73.0
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 2.4e-23 112.1 68 77.9
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 3.2e-23 111.7 69 75.4
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 4.2e-23 111.3 60 85.0
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 5.5e-23 110.9 94 57.4
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 9.3e-23 110.2 69 72.5
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 9.3e-23 110.2 68 75.0
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 2.7e-22 108.6 66 75.8
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 7.9e-22 107.1 69 72.5
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 5.1e-21 104.4 69 71.0
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 8.7e-21 103.6 62 77.4
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 5.8e-17 90.9 57 73.7
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 4.9e-16 87.8 93 46.2
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 3.9e-13 78.2 58 67.2
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 8.7e-13 77.0 53 69.8
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 5.0e-08 61.2 42 66.7
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 9.3e-07 57.0 33 81.8


User provided reference genes

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