Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 2.8e-220 768.5 435 100.0
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 1.3e-188 663.3 435 87.8
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 4.3e-176 621.7 434 85.0
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 1.4e-174 616.7 448 82.6
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 1.4e-174 616.7 430 85.1
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 3.1e-174 615.5 433 84.8
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 8.9e-174 614.0 435 83.9
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 1.7e-172 609.8 435 83.9
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.4e-171 605.9 437 81.7
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 4.6e-170 601.7 442 79.2
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 1.5e-165 586.6 435 80.0
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 4.1e-163 578.6 435 78.2
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 4.7e-159 565.1 435 79.1
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 3.8e-156 555.4 436 78.4
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.8e-150 536.6 448 70.1
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 2.4e-150 536.2 436 70.9
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 9.9e-149 530.8 436 70.2
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 4.2e-147 525.4 442 69.0
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 1.6e-146 523.5 447 69.8
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 9.6e-144 514.2 436 68.6
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-143 513.5 436 68.6
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 4.8e-143 511.9 449 69.5
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 4.8e-143 511.9 443 67.0
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 4.8e-143 511.9 443 67.0
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-142 510.8 436 68.6
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 3.1e-142 509.2 438 69.2
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 1.2e-141 507.3 449 66.6
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 3.4e-141 505.8 436 67.4
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 4.5e-141 505.4 436 68.1
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.3e-140 503.8 436 67.9
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 3.8e-140 502.3 436 67.0
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 3.8e-140 502.3 447 67.1
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 2.4e-139 499.6 456 65.4
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 1.2e-138 497.3 434 65.0
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 3.5e-138 495.7 449 67.3
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 4.6e-138 495.4 437 66.4
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 7.9e-138 494.6 432 64.8
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 1.3e-137 493.8 448 66.3
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 1.8e-137 493.4 413 69.5
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 1.1e-136 490.7 438 67.4
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.1e-136 490.7 446 65.0
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 3.3e-136 489.2 436 65.4
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 2.1e-135 486.5 435 66.0
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 2.1e-135 486.5 436 64.9
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 1.1e-134 484.2 437 64.3
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 9.0e-134 481.1 434 65.2
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 1.2e-133 480.7 447 62.2
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 4.5e-133 478.8 440 63.9
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 1.0e-132 477.6 449 64.4
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 1.3e-132 477.2 427 67.2
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 2.2e-132 476.5 437 64.1
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 2.9e-132 476.1 465 61.7
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 3.8e-132 475.7 421 66.3
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.8e-132 475.7 446 61.9
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 4.9e-132 475.3 442 62.9
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 6.4e-132 474.9 442 64.0
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.4e-131 473.8 438 63.9
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 1.4e-131 473.8 443 62.8
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 2.5e-131 473.0 452 62.4
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 3.2e-131 472.6 455 61.3
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.7e-130 469.5 448 63.8
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 2.7e-130 469.5 445 63.1
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.7e-130 469.5 445 62.7
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 3.5e-130 469.2 446 61.7
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 3.5e-130 469.2 448 64.1
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 1.8e-129 466.8 444 61.7
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 8.7e-129 464.5 445 60.7
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 2.5e-128 463.0 438 64.2
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 3.3e-128 462.6 446 60.8
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 9.6e-128 461.1 442 62.7
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 1.6e-127 460.3 436 63.3
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 4.8e-127 458.8 436 63.1
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 4.8e-127 458.8 448 61.2
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 2.4e-126 456.4 442 60.0
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 6.9e-126 454.9 448 62.5
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 1.2e-125 454.1 443 62.1
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 3.4e-125 452.6 445 60.7
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 3.4e-125 452.6 455 60.9
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 7.6e-125 451.4 448 60.7
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 1.0e-124 451.1 447 59.7
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 4.9e-124 448.7 379 71.0
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 1.1e-123 447.6 436 61.9
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 3.2e-123 446.0 443 60.5
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 9.3e-123 444.5 439 60.6
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 7.9e-122 441.4 443 59.8
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 5.1e-121 438.7 437 60.9
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 9.7e-120 434.5 427 61.1
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 9.7e-120 434.5 427 61.1
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 6.3e-119 431.8 476 57.6
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 1.4e-118 430.6 414 63.8
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.5e-116 421.4 380 66.1
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 8.5e-116 421.4 444 59.2
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 2.5e-115 419.9 426 58.0
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 1.6e-114 417.2 442 59.5
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 3.6e-114 416.0 444 58.1
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.0e-105 386.3 353 64.6
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 7.2e-99 365.2 459 49.9
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 6.7e-97 358.6 389 58.9
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 2.0e-93 347.1 314 66.2
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 1.5e-91 340.9 362 57.5
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 1.0e-89 334.7 223 89.2
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 1.4e-89 334.3 332 67.2
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 5.2e-89 332.4 454 48.2
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 4.4e-88 329.3 428 50.2
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.1e-86 321.6 390 53.6
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 1.3e-84 317.8 464 46.3
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 2.2e-84 317.0 419 49.6
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.5e-83 314.3 442 48.2
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 1.4e-81 307.8 365 61.4
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 2.0e-80 303.9 419 48.9
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 2.7e-77 293.5 275 71.3
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 4.5e-77 292.7 268 64.6
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 5.9e-77 292.4 455 46.4
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.6e-74 284.3 399 47.9
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 2.0e-69 267.3 251 62.9
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 3.9e-68 263.1 276 57.2
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 3.6e-58 229.9 206 65.5
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 4.3e-51 206.5 248 54.4
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 4.0e-49 199.9 305 47.9
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 3.5e-45 186.8 196 55.6
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 3.3e-43 180.3 368 40.5
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 7.3e-43 179.1 444 35.4
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 9.6e-43 178.7 369 36.9
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.8e-41 174.5 180 58.3
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 3.1e-41 173.7 438 35.2
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 3.8e-39 166.8 166 60.8
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 1.4e-38 164.9 258 45.0
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 3.2e-38 163.7 144 65.3
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 1.2e-37 161.8 128 71.1
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 2.1e-29 134.4 156 56.4
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.3e-27 127.1 157 51.6
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 1.6e-26 124.8 131 55.0
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 4.8e-26 123.2 216 45.4
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 1.1e-22 112.1 92 66.3
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.6e-21 108.2 111 67.6
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.3e-20 105.1 147 47.6
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 4.3e-19 100.1 95 65.3
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 1.6e-18 98.2 188 45.7
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 1.8e-17 94.7 168 46.4
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 1.2e-16 92.0 60 80.0
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 4.5e-16 90.1 67 74.6


User provided reference genes

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