Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1972 Capsella rubella HOM05D003218 ORTHO05D012988 2.0e-101 372.5 197 100.0
AL8G35460 Arabidopsis lyrata HOM05D003218 ORTHO05D012988 1.0e-60 237.3 199 69.8
AT5G59230 Arabidopsis thaliana HOM05D003218 ORTHO05D012988 3.2e-54 215.7 200 67.0
CARHR285310 Cardamine hirsuta HOM05D003218 ORTHO05D012988 1.0e-44 184.1 199 57.8
BolC9t57993H Brassica oleracea HOM05D012466 ORTHO05D012988 6.2e-42 174.9 210 52.9
BraA10t43713Z Brassica rapa HOM05D012466 ORTHO05D012988 2.0e-40 169.9 198 53.0
BcaB08g36290 Brassica carinata HOM05D012466 ORTHO05D012988 6.5e-39 164.9 205 50.7
C09p51340 Brassica napus HOM05D012466 ORTHO05D012988 8.4e-39 164.5 202 52.0
A10p16300 Brassica napus HOM05D012466 ORTHO05D012988 1.2e-37 160.6 190 52.6
BcaB05g22477 Brassica carinata HOM05D012466 ORTHO05D012988 2.7e-29 132.9 212 42.0
BcaB02g11244 Brassica carinata HOM05D012466 ORTHO05D012988 1.1e-17 94.4 133 51.1
RcHm_v2.0_Chr5g0029921 Rosa chinensis HOM05D003218 ORTHO05D003702 7.0e-17 91.7 206 34.5
THA.LOC104810753 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 5.0e-15 85.5 360 26.1
C02p12820 Brassica napus HOM05D012466 ORTHO05D012988 1.1e-14 84.3 154 39.6
Thhalv10015836m.g Eutrema salsugineum HOM05D012466 ORTHO05D012988 1.1e-11 74.3 61 49.2
Lsat_1_v5_gn_9_24801 Lactuca sativa HOM05D003218 ORTHO05D003702 4.4e-11 72.4 336 24.4
Cpa.g.sc81.98 Carica papaya HOM05D003218 ORTHO05D003702 5.7e-11 72.0 89 48.3
AUR62001737 Chenopodium quinoa HOM05D003218 ORTHO05D003702 5.7e-11 72.0 146 32.9
FAN21G2440 Fragaria x ananassa HOM05D003218 ORTHO05D003702 5.7e-11 72.0 197 28.9
BcaC05g24695 Brassica carinata HOM05D003218 ORTHO05D003702 7.4e-11 71.6 351 26.8
MSTRG.21222 Avicennia marina HOM05D003218 ORTHO05D003702 1.3e-10 70.9 48 62.5
Dinv17046 Davidia involucrata HOM05D003218 ORTHO05D003702 1.7e-10 70.5 88 47.7
Dinv42990 Davidia involucrata HOM05D003218 ORTHO05D003702 1.7e-10 70.5 88 47.7
Dinv43108 Davidia involucrata HOM05D003218 ORTHO05D003702 1.7e-10 70.5 88 47.7
Cc01_g13340 Coffea canephora HOM05D003218 ORTHO05D003702 2.2e-10 70.1 81 49.4
Aa31LG5G7000 Aethionema arabicum HOM05D003218 ORTHO05D003702 2.8e-10 69.7 231 31.6
Atru.chr3.3992 Acer truncatum HOM05D003218 ORTHO05D003702 3.7e-10 69.3 72 47.2
Dinv34286 Davidia involucrata HOM05D003218 ORTHO05D003702 3.7e-10 69.3 88 46.6
CSS0023241 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 4.8e-10 68.9 91 45.1
Ciclev10028561m.g Citrus clementina HOM05D003218 ORTHO05D003702 6.3e-10 68.6 82 45.1
Duzib150G1564 Durio zibethinus HOM05D003218 ORTHO05D003702 6.3e-10 68.6 48 60.4
Eucgr.J02029 Eucalyptus grandis HOM05D003218 ORTHO05D003702 6.3e-10 68.6 48 60.4
Gohir.A05G093100 Gossypium hirsutum HOM05D003218 ORTHO05D003702 6.3e-10 68.6 77 50.6
MD11G1094800 Malus domestica HOM05D003218 ORTHO05D003702 6.3e-10 68.6 48 60.4
A10p06010 Brassica napus HOM05D003218 ORTHO05D003702 8.2e-10 68.2 327 24.5
CAN.G394.76 Capsicum annuum HOM05D003218 ORTHO05D003702 8.2e-10 68.2 78 41.0
CARHR007220 Cardamine hirsuta HOM05D003218 ORTHO05D003702 8.2e-10 68.2 293 24.9
CiPaw.13G089300 Carya illinoinensis HOM05D003218 ORTHO05D003702 8.2e-10 68.2 48 60.4
Oeu053891.1 Olea europaea HOM05D003218 ORTHO05D003702 8.2e-10 68.2 48 60.4
ECA248G3960 Erigeron canadensis HOM05D003218 ORTHO05D003702 1.1e-09 67.8 48 60.4
FvH4_3g36940 Fragaria vesca HOM05D003218 ORTHO05D003702 1.1e-09 67.8 48 60.4
FAN11G1275 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.1e-09 67.8 48 60.4
FAN16G2405 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.1e-09 67.8 48 60.4
FAN21G3821 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.1e-09 67.8 48 60.4
FAN25G2385 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.1e-09 67.8 48 60.4
HanXRQChr01g0010401 Helianthus annuus HOM05D003218 ORTHO05D003702 1.1e-09 67.8 83 50.6
HanXRQChr01g0010631 Helianthus annuus HOM05D003218 ORTHO05D003702 1.1e-09 67.8 83 50.6
Rhsim01G0231600 Rhododendron simsii HOM05D003218 ORTHO05D003702 1.1e-09 67.8 48 58.3
RcHm_v2.0_Chr5g0066351 Rosa chinensis HOM05D003218 ORTHO05D003702 1.1e-09 67.8 48 60.4
TWI75G0827 Tripterygium wilfordii HOM05D003218 ORTHO05D003702 1.1e-09 67.8 77 42.9
AL1G17620 Arabidopsis lyrata HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
AL1G17650 Arabidopsis lyrata HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
AT1G07470 Arabidopsis thaliana HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Carub.0001s0677 Capsella rubella HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Carub.0001s0680 Capsella rubella HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Ca_01303_v3 Cicer arietinum L. HOM05D003218 ORTHO05D003702 1.4e-09 67.4 83 47.0
COL.COLO4_18577 Corchorus olitorius HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Migut.D00878 Erythranthe guttata HOM05D003218 ORTHO05D003702 1.4e-09 67.4 72 51.4
Gohir.A07G100400 Gossypium hirsutum HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Gohir.D07G104600 Gossypium hirsutum HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Gorai.001G112500 Gossypium raimondii HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Gorai.009G096500 Gossypium raimondii HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Lj3g0024298 Lotus japonicus HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 60.4
Lalb_Chr01g0003481 Lupinus albus HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Manes.01G169400 Manihot esculenta HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Prupe.6G070500 Prunus persica HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
PGR102G0701 Punica granatum HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Hund04922 Selenicereus undatus HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Hund18888 Selenicereus undatus HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
THA.LOC104799429 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
THA.LOC104800687 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
THA.LOC104815781 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Thecc.09G315600 Theobroma cacao HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 58.3
Zm00001eb346300 Zea mays HOM05D003218 ORTHO05D003702 1.4e-09 67.4 48 56.2
Actinidia34426 Actinidia chinensis HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
Ah.15g098630 Amaranthus hybridus HOM05D003218 ORTHO05D003702 1.8e-09 67.0 75 44.0
Aqoxy1G00871 Aquilegia oxysepala HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
CSS0024890 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 1.8e-09 67.0 92 47.8
CiPaw.14G065100 Carya illinoinensis HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
Glyma.11G136100 Glycine max HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
Lalb_Chr03g0026451 Lupinus albus HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
Lalb_Chr19g0137971 Lupinus albus HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
MD03G1086200 Malus domestica HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
Manes.02G128700 Manihot esculenta HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
Os05g0292200 Oryza sativa ssp. japonica HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 56.2
Phvul.L008243 Phaseolus vulgaris HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
Psat5g118600 Pisum sativum HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
QL01p029248 Quercus lobata HOM05D003218 ORTHO05D003702 1.8e-09 67.0 47 57.4
SGA_v2.0_scaffold111G31542 Striga asiatica HOM05D003218 ORTHO05D003702 1.8e-09 67.0 72 51.4
SGA_v2.0_scaffold54G19476 Striga asiatica HOM05D003218 ORTHO05D003702 1.8e-09 67.0 74 50.0
VMungo1080G0815 Vigna mungo HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 58.3
Zm00001eb284630 Zea mays HOM05D003218 ORTHO05D003702 1.8e-09 67.0 48 56.2
Actinidia23918 Actinidia chinensis HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
Aa31LG5G7120 Aethionema arabicum HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
C08p03080 Brassica napus HOM05D003218 ORTHO05D003702 2.4e-09 66.6 370 23.0
CANSAT54G1307 Cannabis sativa HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
Duzib168G2307 Durio zibethinus HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
Glyma.12G059800 Glycine max HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
Glyma.13G339000 Glycine max HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
Glyma.15G035300 Glycine max HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
Phvul.005G159000 Phaseolus vulgaris HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
Solyc06g076390.3 Solanum lycopersicum HOM05D003218 ORTHO05D003702 2.4e-09 66.6 74 47.3
Sopen06g032800 Solanum pennellii HOM05D003218 ORTHO05D003702 2.4e-09 66.6 74 47.3
TAR369G0400 Trochodendron aralioides HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
VMungo1080G1854 Vigna mungo HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
GSVIVG01024907001 Vitis vinifera HOM05D003218 ORTHO05D003702 2.4e-09 66.6 48 58.3
Aa31LG1G6850 Aethionema arabicum HOM05D003218 ORTHO05D003702 3.1e-09 66.2 48 58.3
CDE08G0741 Ceratophyllum demersum HOM05D003218 ORTHO05D003702 3.1e-09 66.2 80 46.2
PSO063G1745 Papaver somniferum HOM05D003218 ORTHO05D003702 3.1e-09 66.2 48 56.2
PSO339G5513 Papaver somniferum HOM05D003218 ORTHO05D003702 3.1e-09 66.2 48 56.2
Actinidia33769 Actinidia chinensis HOM05D003218 ORTHO05D003702 4.1e-09 65.9 48 56.2
EL10Ac7g16069 Beta vulgaris HOM05D003218 ORTHO05D003702 4.1e-09 65.9 48 56.2
Thhalv10007947m.g Eutrema salsugineum HOM05D003218 ORTHO05D003702 4.1e-09 65.9 48 56.2
Medtr2g097740 Medicago truncatula HOM05D003218 ORTHO05D003702 4.1e-09 65.9 82 56.1
RcHm_v2.0_Chr5g0030001 Rosa chinensis HOM05D003218 ORTHO05D003702 4.1e-09 65.9 48 56.2
AT1G07480 Arabidopsis thaliana HOM05D003218 ORTHO05D003702 5.3e-09 65.5 48 56.2
BcaB03g13393 Brassica carinata HOM05D003218 ORTHO05D003702 5.3e-09 65.5 48 56.2
A08p35650 Brassica napus HOM05D003218 ORTHO05D003702 5.3e-09 65.5 48 56.2
BolC8t47106H Brassica oleracea HOM05D003218 ORTHO05D003702 5.3e-09 65.5 48 56.2
CDE05G1682 Ceratophyllum demersum HOM05D003218 ORTHO05D003702 5.3e-09 65.5 48 54.2
MELO3C025890.2 Cucumis melo HOM05D003218 ORTHO05D003702 5.3e-09 65.5 45 60.0
CsaV3_7G010010 Cucumis sativus L. HOM05D003218 ORTHO05D003702 5.3e-09 65.5 45 60.0
Thhalv10007946m.g Eutrema salsugineum HOM05D003218 ORTHO05D003702 5.3e-09 65.5 48 56.2
Lj3g0009557 Lotus japonicus HOM05D003218 ORTHO05D003702 5.3e-09 65.5 48 56.2
Sed0005039 Sechium edule HOM05D003218 ORTHO05D003702 5.3e-09 65.5 45 62.2
TPR.G27370 Trifolium pratense HOM05D003218 ORTHO05D003702 5.3e-09 65.5 48 56.2
Nn2g13454 Nelumbo nucifera HOM05D003218 ORTHO05D003702 7.0e-09 65.1 48 58.3
Potri.001G244204 Populus trichocarpa HOM05D003218 ORTHO05D003702 7.0e-09 65.1 48 52.1
BcaB01g02433 Brassica carinata HOM05D005426 ORTHO05D012988 9.1e-09 64.7 156 35.3
BcaC07g41996 Brassica carinata HOM05D003218 ORTHO05D003702 9.1e-09 64.7 48 56.2
A09p66400 Brassica napus HOM05D003218 ORTHO05D003702 9.1e-09 64.7 48 56.2
BolC8t52583H Brassica oleracea HOM05D003218 ORTHO05D003702 9.1e-09 64.7 48 56.2
BraA09t41976Z Brassica rapa HOM05D003218 ORTHO05D003702 9.1e-09 64.7 48 56.2
Potri.009G036700 Populus trichocarpa HOM05D003218 ORTHO05D003702 9.1e-09 64.7 45 60.0
HPP92_015484 Vanilla planifolia HOM05D003218 ORTHO05D003702 9.1e-09 64.7 48 54.2
BcaB02g06738 Brassica carinata HOM05D003218 ORTHO05D003702 1.2e-08 64.3 48 56.2
BcaC05g24697 Brassica carinata HOM05D003218 ORTHO05D003702 1.2e-08 64.3 48 56.2
Lalb_Chr24g0397181 Lupinus albus HOM05D003218 ORTHO05D003702 1.2e-08 64.3 45 57.8
arahy.Tifrunner.gnm1.ann1.4KG4VQ Arachis hypogaea HOM05D003218 ORTHO05D003702 1.6e-08 63.9 317 22.4
BcaB05g22476 Brassica carinata HOM05D012466 ORTHO05D012988 1.6e-08 63.9 139 44.6
BcaC07g42470 Brassica carinata HOM05D003218 ORTHO05D003702 2.0e-08 63.5 70 48.6
C08p50560 Brassica napus HOM05D003218 ORTHO05D003702 2.6e-08 63.2 67 50.7
Rhsim13G0077100 Rhododendron simsii HOM05D003218 ORTHO05D003702 2.6e-08 63.2 48 54.2
TAR365G0505 Trochodendron aralioides HOM05D003218 ORTHO05D003702 2.6e-08 63.2 48 54.2
Peaxi162Scf00481g00330 Petunia axillaris HOM05D003218 ORTHO05D003702 3.5e-08 62.8 87 43.7
SEGI_10054 Sequoiadendron giganteum HOM05D003218 ORTHO05D003702 3.5e-08 62.8 48 52.1
PSO478G3557 Papaver somniferum HOM05D003218 ORTHO05D003702 4.5e-08 62.4 209 28.7
ECA247G2536 Erigeron canadensis HOM05D003218 ORTHO05D003702 5.9e-08 62.0 48 52.1
Pp3c24_9280 Physcomitrium patens HOM05D003218 ORTHO05D003702 5.9e-08 62.0 45 55.6
Pp3c8_13300 Physcomitrium patens HOM05D003218 ORTHO05D003702 5.9e-08 62.0 45 55.6
Aqoxy2G03612 Aquilegia oxysepala HOM05D003218 ORTHO05D003702 7.7e-08 61.6 45 55.6
BraA08t35471Z Brassica rapa HOM05D003218 ORTHO05D003702 7.7e-08 61.6 67 46.3
Mapoly0112s0032 Marchantia polymorpha HOM05D003218 ORTHO05D003702 7.7e-08 61.6 45 55.6
Nn2g11208 Nelumbo nucifera HOM05D003218 ORTHO05D003702 7.7e-08 61.6 48 52.1
ATR0559G311 Amborella trichopoda HOM05D003218 ORTHO05D003702 1.0e-07 61.2 45 53.3
Nitab4.5_0000463g0110 Nicotiana tabacum HOM05D003218 ORTHO05D003702 1.3e-07 60.8 73 42.5
PSO210G7823 Papaver somniferum HOM05D003218 ORTHO05D003702 1.3e-07 60.8 48 50.0
PSO832G1276 Papaver somniferum HOM05D003218 ORTHO05D003702 1.3e-07 60.8 48 50.0
Hma1.2p1_1664F.1_g296410 Hydrangea macrophylla HOM05D003218 ORTHO05D003702 2.9e-07 59.7 55 49.1
Nitab4.5_0006916g0020 Nicotiana tabacum HOM05D003218 ORTHO05D003702 2.9e-07 59.7 72 43.1
PGSC0003DMG400030421 Solanum tuberosum HOM05D003218 ORTHO05D003702 2.9e-07 59.7 63 46.0
arahy.Tifrunner.gnm1.ann1.C2EA1B Arachis hypogaea HOM05D003218 ORTHO05D003702 3.8e-07 59.3 106 34.0
Pp3c4_18060 Physcomitrium patens HOM05D003218 ORTHO05D003702 3.8e-07 59.3 45 53.3
Sp6g20760 Schrenkiella parvula HOM05D012466 ORTHO05D012988 6.5e-07 58.5 41 58.5
C05p05490 Brassica napus HOM05D003218 ORTHO05D003702 8.5e-07 58.2 70 47.1
BolC5t29321H Brassica oleracea HOM05D003218 ORTHO05D003702 8.5e-07 58.2 70 47.1
BraA10t42863Z Brassica rapa HOM05D003218 ORTHO05D003702 1.1e-06 57.8 70 45.7
Nn3g19604 Nelumbo nucifera HOM05D003218 ORTHO05D003702 1.1e-06 57.8 45 48.9
Aa31LG1G6820 Aethionema arabicum HOM05D003218 ORTHO05D003702 1.9e-06 57.0 71 45.1
ATR0680G333 Amborella trichopoda HOM05D003218 ORTHO05D003702 1.9e-06 57.0 44 52.3
AUR62020038 Chenopodium quinoa HOM05D003218 ORTHO05D002695 1.9e-06 57.0 138 29.7
Lj1A146G69 Lonicera japonica HOM05D003218 ORTHO05D003702 2.5e-06 56.6 110 33.6
Haze_24169 Corylus avellana HOM05D003218 ORTHO05D003702 3.2e-06 56.2 42 52.4
Haze_24174 Corylus avellana HOM05D003218 ORTHO05D003702 3.2e-06 56.2 42 52.4
DCAR_018926 Daucus carota HOM05D003218 ORTHO05D003702 3.2e-06 56.2 40 57.5
CARHR007250 Cardamine hirsuta HOM05D003218 ORTHO05D003702 4.2e-06 55.8 60 45.0
Oeu007659.1 Olea europaea HOM05D003218 ORTHO05D003702 4.2e-06 55.8 77 36.4
CSS0034814 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 5.5e-06 55.5 68 42.6
Hma1.2p1_0615F.1_g189680 Hydrangea macrophylla HOM05D003218 ORTHO05D003702 5.5e-06 55.5 74 43.2
Oeu033634.1 Olea europaea HOM05D003218 ORTHO05D003702 5.5e-06 55.5 40 55.0
PSO384G5051 Papaver somniferum HOM05D003218 ORTHO05D003702 7.2e-06 55.1 235 26.0
SGA_v2.0_scaffold24G10659 Striga asiatica HOM05D003218 ORTHO05D003702 7.2e-06 55.1 40 55.0
Ah.08g220030 Amaranthus hybridus HOM05D003218 ORTHO05D003702 9.4e-06 54.7 41 53.7
Peaxi162Scf00481g00323 Petunia axillaris HOM05D003218 ORTHO05D003702 9.4e-06 54.7 71 46.5
SalBow2G2908 Salvia bowleyana HOM05D003218 ORTHO05D003702 9.4e-06 54.7 40 52.5


User provided reference genes

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