Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 5.1e-73 277.7 148 100.0
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 2.1e-66 255.8 152 85.5
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 8.0e-66 253.8 149 84.6
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.0e-65 253.4 148 84.5
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 2.0e-64 249.2 149 84.6
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 4.4e-64 248.1 152 80.9
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 2.8e-63 245.4 152 79.6
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.1e-62 243.4 154 79.9
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-62 243.4 154 79.9
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.2e-61 240.0 150 80.7
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 1.6e-61 239.6 145 82.1
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 5.9e-61 237.7 148 79.1
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 5.9e-61 237.7 145 79.3
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.3e-60 236.5 149 77.9
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 3.8e-60 235.0 149 78.5
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 8.5e-60 233.8 149 77.9
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.6e-58 229.6 144 79.9
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 5.7e-56 221.1 155 75.5
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.4e-54 216.5 137 76.6
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.0e-52 210.3 149 69.1
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.2e-52 209.1 141 75.2
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 8.0e-50 200.7 165 67.9
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 3.4e-48 195.3 148 71.6
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.2e-45 186.8 158 57.6
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.6e-45 186.4 135 63.7
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.5e-45 185.3 155 58.1
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 4.5e-45 184.9 135 66.7
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.3e-44 183.3 158 57.6
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 1.7e-44 183.0 158 57.6
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 2.9e-44 182.2 134 62.7
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 5.0e-44 181.4 136 63.2
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.1e-43 180.3 134 64.2
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.5e-43 179.9 134 64.2
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.5e-43 179.1 154 61.0
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 4.2e-43 178.3 159 59.7
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 5.5e-43 177.9 135 61.5
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 9.5e-43 177.2 135 68.9
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.2e-42 176.8 136 62.5
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 1.6e-42 176.4 148 59.5
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 2.1e-42 176.0 127 66.1
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.8e-42 175.6 150 61.3
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 3.6e-42 175.3 140 63.6
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 4.7e-42 174.9 154 63.6
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 4.7e-42 174.9 154 63.6
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 4.7e-42 174.9 154 63.6
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 8.0e-42 174.1 150 57.3
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.8e-41 172.9 135 60.0
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 2.3e-41 172.6 142 68.3
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 2.3e-41 172.6 156 62.2
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 4.0e-41 171.8 122 67.2
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 6.8e-41 171.0 120 67.5
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 8.9e-41 170.6 150 64.0
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 1.2e-40 170.2 134 60.4
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 1.5e-40 169.9 135 62.2
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 3.4e-40 168.7 137 62.8
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 4.4e-40 168.3 138 68.1
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 5.7e-40 167.9 86 83.7
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 9.8e-40 167.2 150 62.7
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.3e-39 166.8 139 61.2
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.2e-39 166.0 152 60.5
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.2e-39 166.0 162 58.0
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.2e-39 166.0 146 54.1
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.8e-39 165.6 136 65.4
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 2.8e-39 165.6 102 71.6
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.7e-39 165.2 134 63.4
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 3.7e-39 165.2 156 55.8
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 4.9e-39 164.9 148 64.2
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 4.9e-39 164.9 150 56.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 6.3e-39 164.5 139 66.9
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 6.3e-39 164.5 127 67.7
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 1.4e-38 163.3 160 60.0
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 5.4e-38 161.4 152 62.5
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 5.4e-38 161.4 146 60.3
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 7.0e-38 161.0 150 61.3
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 9.2e-38 160.6 152 61.2
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 9.2e-38 160.6 139 55.4
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 9.2e-38 160.6 158 60.8
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.2e-37 160.2 137 65.7
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.2e-37 160.2 134 63.4
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 2.7e-37 159.1 135 65.2
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 3.5e-37 158.7 79 83.5
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 3.5e-37 158.7 135 59.3
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 4.5e-37 158.3 84 78.6
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 7.8e-37 157.5 84 77.4
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 7.8e-37 157.5 124 71.8
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.0e-36 157.1 125 68.8
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.0e-36 157.1 113 65.5
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.7e-36 156.4 84 77.4
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 2.9e-36 155.6 80 83.8
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 6.6e-36 154.5 75 85.3
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 6.6e-36 154.5 80 81.2
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 6.6e-36 154.5 145 56.6
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.5e-35 153.3 85 77.6
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 1.5e-35 153.3 85 77.6
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.5e-35 153.3 133 66.2
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 3.3e-35 152.1 79 79.7
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.3e-35 151.8 152 61.2
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 4.3e-35 151.8 85 75.3
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 5.6e-35 151.4 148 60.1
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 5.6e-35 151.4 79 79.7
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 7.3e-35 151.0 135 65.9
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.2e-34 150.2 132 65.9
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.6e-34 149.8 83 73.5
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 2.1e-34 149.4 153 53.6
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 2.1e-34 149.4 85 76.5
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 4.7e-34 148.3 148 58.8
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 6.1e-34 147.9 83 72.3
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 8.0e-34 147.5 153 52.3
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 8.0e-34 147.5 74 86.5
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 1.0e-33 147.1 81 74.1
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 2.3e-33 146.0 120 65.0
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 8.9e-33 144.1 120 59.2
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.5e-32 143.3 77 80.5
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 1.7e-31 139.8 135 62.2
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.4e-30 136.0 147 51.0
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 1.7e-28 129.8 94 61.7
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 2.3e-28 129.4 94 60.6
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.1e-25 120.6 119 50.4
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.3e-25 119.4 156 42.9
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 8.9e-25 117.5 112 64.3
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 8.9e-25 117.5 108 64.8
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 1.2e-24 117.1 54 87.0
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 3.4e-24 115.5 79 73.4
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.4e-24 115.5 110 51.8
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 4.4e-24 115.2 104 57.7
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 1.7e-23 113.2 75 66.7
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 2.2e-23 112.8 52 88.5
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 5.1e-20 101.7 140 38.6
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 8.6e-20 100.9 82 52.4
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 7.3e-19 97.8 85 54.1
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 2.8e-18 95.9 140 48.6
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 2.8e-18 95.9 91 52.7
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.1e-17 94.0 77 53.2
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 4.9e-15 85.1 91 62.6
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 3.5e-13 79.0 154 42.2
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 3.0e-12 75.9 85 41.2
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 7.3e-11 71.2 79 54.4
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.1e-09 67.4 76 40.8
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 1.5e-08 63.5 43 60.5
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 3.4e-08 62.4 42 61.9
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 2.9e-07 59.3 41 58.5
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 1.1e-06 57.4 49 51.0


User provided reference genes

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