Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 5.1e-90 334.3 163 100.0
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 5.6e-89 330.9 163 98.2
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 3.7e-88 328.2 163 96.9
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 1.4e-87 326.2 163 96.3
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 1.2e-86 323.2 163 93.9
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 1.2e-86 323.2 163 93.9
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 1.5e-86 322.8 163 94.5
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 2.0e-86 322.4 163 94.5
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 4.5e-86 321.2 163 93.9
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 5.8e-86 320.9 163 94.5
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 2.2e-85 318.9 163 93.9
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 9.3e-84 313.5 162 93.2
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 6.7e-82 307.4 163 89.6
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 2.5e-81 305.4 153 93.5
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 2.5e-81 305.4 153 93.5
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 9.6e-81 303.5 153 94.1
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 1.3e-80 303.1 152 94.1
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 3.7e-80 301.6 163 84.7
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 3.0e-74 282.0 163 79.1
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 3.0e-74 282.0 163 79.1
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 6.7e-74 280.8 163 78.5
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 3.3e-73 278.5 163 77.9
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 5.7e-73 277.7 162 76.5
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.8e-72 275.4 163 77.3
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 3.7e-72 275.0 163 77.9
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 8.2e-72 273.9 163 76.1
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 3.1e-71 271.9 163 75.5
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 6.9e-71 270.8 163 73.6
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 1.5e-70 269.6 163 74.8
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 2.0e-70 269.2 163 76.1
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 3.4e-70 268.5 163 75.5
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 4.5e-70 268.1 163 74.2
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 1.0e-69 266.9 163 74.8
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 73.6
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 1.3e-69 266.5 163 73.6
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 2.9e-69 265.4 163 73.6
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 3.8e-69 265.0 163 73.0
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 5.0e-69 264.6 163 73.6
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 1.4e-68 263.1 159 74.2
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.9e-68 262.7 159 74.8
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 2.5e-68 262.3 163 73.0
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 3.2e-68 261.9 159 74.8
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 5.5e-68 261.2 163 82.2
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 9.4e-68 260.4 148 79.7
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 9.4e-68 260.4 163 72.4
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 9.4e-68 260.4 163 73.0
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 2.1e-67 259.2 163 71.8
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.1e-67 259.2 163 73.0
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 2.7e-67 258.8 163 72.4
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 3.6e-67 258.5 163 74.2
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 6.1e-67 257.7 163 72.4
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.3e-66 255.8 163 69.3
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 3.9e-66 255.0 163 69.9
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 3.9e-66 255.0 151 75.5
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.1e-65 253.4 163 71.2
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 2.0e-65 252.7 163 68.7
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 2.5e-65 252.3 163 68.7
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 7.4e-65 250.8 151 73.5
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 9.7e-65 250.4 154 75.3
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 9.7e-65 250.4 163 69.9
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 3.7e-64 248.4 151 72.8
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.8e-64 248.1 163 72.4
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 4.8e-64 248.1 156 73.7
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 8.2e-64 247.3 163 72.4
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.4e-63 246.5 155 72.9
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 1.8e-63 246.1 148 75.0
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.8e-63 246.1 163 71.2
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 6.9e-63 244.2 154 72.1
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 1.2e-62 243.4 162 69.8
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 1.5e-62 243.0 163 69.9
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.6e-62 242.3 147 76.2
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 2.6e-62 242.3 147 76.2
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.0e-61 240.4 154 70.1
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.3e-61 240.0 163 67.5
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 3.8e-61 238.4 152 69.7
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 8.5e-61 237.3 147 70.1
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.1e-60 236.9 142 72.5
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 2.5e-60 235.7 152 71.1
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.2e-60 235.3 144 74.3
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 3.2e-60 235.3 165 69.1
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 4.2e-60 235.0 164 64.0
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 7.2e-60 234.2 139 75.5
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 1.2e-59 233.4 143 70.6
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 4.7e-59 231.5 147 68.0
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 6.1e-59 231.1 164 65.2
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 1.0e-58 230.3 146 69.2
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 1.0e-58 230.3 163 63.8
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.0e-58 230.3 165 65.5
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.0e-58 230.3 136 73.5
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 1.8e-58 229.6 165 64.2
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 1.8e-58 229.6 144 70.8
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 1.8e-58 229.6 144 70.8
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 2.3e-58 229.2 157 66.2
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 3.9e-58 228.4 165 64.8
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 3.9e-58 228.4 165 64.8
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 3.9e-58 228.4 165 64.8
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 3.9e-58 228.4 165 64.2
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 5.1e-58 228.0 178 60.7
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 5.1e-58 228.0 146 70.5
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 6.7e-58 227.6 165 64.8
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 8.8e-58 227.3 165 64.8
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 7.4e-57 224.2 165 64.2
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.7e-56 223.0 165 63.6
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 4.8e-56 221.5 160 63.8
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 6.3e-56 221.1 162 62.3
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 6.3e-56 221.1 149 65.8
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 8.2e-56 220.7 163 60.1
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 1.1e-55 220.3 142 68.3
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 5.3e-55 218.0 163 62.6
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.0e-53 213.8 146 63.0
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 1.3e-53 213.4 165 62.4
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 2.2e-53 212.6 139 66.9
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 3.8e-53 211.8 136 66.2
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.5e-52 209.9 124 77.4
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 2.7e-51 205.7 163 62.6
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 2.0e-46 189.5 109 80.7
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 2.5e-44 182.6 163 52.8
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 1.0e-42 177.2 163 51.5
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 6.8e-42 174.5 123 65.0
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 4.8e-40 168.3 124 62.9
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 5.3e-39 164.9 140 64.3
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 7.0e-39 164.5 123 59.3
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 1.2e-38 163.7 163 53.4
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.7e-37 159.8 149 53.7
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 2.2e-37 159.5 103 68.9
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 1.9e-36 156.4 164 50.0
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 9.4e-36 154.1 97 71.1
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 6.1e-35 151.4 176 50.0
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 1.0e-34 150.6 121 57.9
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 1.4e-34 150.2 176 49.4
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 8.8e-34 147.5 164 46.3
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.2e-33 147.1 163 49.1
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.1e-31 140.6 164 46.3
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 2.4e-31 139.4 166 46.4
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 4.2e-28 128.6 90 65.6
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.8e-27 125.9 132 50.8
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 9.2e-23 110.9 122 53.3
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 3.3e-20 102.4 53 94.3
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 3.3e-20 102.4 63 76.2
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 5.2e-18 95.1 67 70.1
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 1.3e-16 90.5 49 89.8
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 1.0e-13 80.9 46 87.0
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 6.2e-11 71.6 62 58.1
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 7.5e-09 64.7 66 45.5
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 2.1e-06 56.6 42 61.9


User provided reference genes

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