Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1925 Capsella rubella HOM05D011448 ORTHO05D003520 2.0e-164 582.4 305 100.0
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 6.2e-105 384.8 315 70.2
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 4.1e-101 372.1 319 69.0
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 5.6e-98 361.7 315 65.7
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 1.4e-96 357.1 306 69.3
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 1.5e-82 310.5 309 63.8
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 5.2e-80 302.0 309 64.1
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 4.4e-79 298.9 315 61.0
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 4.4e-79 298.9 315 61.0
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 1.4e-77 293.9 309 62.1
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 2.6e-71 273.1 309 54.4
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 1.1e-29 134.8 324 34.3
BcaC09g48271 Brassica carinata HOM05D011448 ORTHO05D003520 6.5e-22 109.0 92 67.4
C01p52290 Brassica napus HOM05D011448 ORTHO05D003520 6.5e-22 109.0 92 67.4
BolC1t05169H Brassica oleracea HOM05D011448 ORTHO05D003520 6.5e-22 109.0 92 67.4
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 8.0e-20 102.1 356 31.5
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 8.8e-19 98.6 346 31.5
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.0e-18 97.4 356 29.5
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 2.0e-18 97.4 368 28.5
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.1e-16 91.7 345 27.8
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 1.1e-16 91.7 341 27.9
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.1e-16 91.7 324 31.5
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.2e-15 88.2 368 30.2
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.6e-15 87.8 362 30.7
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.6e-15 87.8 362 29.8
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 2.0e-15 87.4 337 32.0
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 2.0e-15 87.4 348 28.4
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 2.7e-15 87.0 343 31.2
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 2.7e-15 87.0 352 29.0
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 3.5e-15 86.7 348 28.4
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.5e-15 86.3 362 29.6
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 1.7e-14 84.3 332 28.9
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 2.9e-14 83.6 358 28.5
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 2.9e-14 83.6 350 26.6
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 2.5e-13 80.5 298 30.5
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 9.4e-13 78.6 335 25.1
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 9.4e-13 78.6 310 27.7
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 1.2e-12 78.2 326 28.8
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 3.6e-12 76.6 325 27.1
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 4.7e-12 76.3 328 25.6
BolC1t05170H Brassica oleracea HOM05D011448 ORTHO05D039648 6.1e-12 75.9 86 54.7
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 8.0e-12 75.5 331 27.8
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.0e-11 75.1 339 26.8
BcaC09g48270 Brassica carinata HOM05D011448 ORTHO05D039648 3.0e-11 73.6 66 63.6
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 5.2e-11 72.8 252 31.3
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 1.2e-10 71.6 349 27.2
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 4.4e-10 69.7 348 27.0
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 4.4e-10 69.7 307 26.4
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 5.7e-10 69.3 308 28.2
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 7.5e-10 68.9 331 26.9
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.3e-09 68.2 284 27.8
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 1.3e-09 68.2 317 26.5
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.8e-09 66.2 336 26.2
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 6.3e-09 65.9 343 25.4
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 6.3e-09 65.9 320 24.7
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 8.3e-09 65.5 283 27.9
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.4e-08 64.7 362 28.2
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 3.1e-08 63.5 295 25.1
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.6e-07 61.2 352 26.1
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.7e-07 60.5 333 24.9
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 3.5e-07 60.1 329 27.1
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.5e-07 59.7 321 26.2
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 5.9e-07 59.3 319 25.4
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 5.9e-07 59.3 343 24.2
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 7.7e-07 58.9 324 26.9
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 7.7e-07 58.9 275 26.5
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 1.0e-06 58.5 304 28.6
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.0e-06 58.5 340 26.8
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 1.7e-06 57.8 222 30.6
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 2.9e-06 57.0 317 25.9
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.9e-06 57.0 317 25.9
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.0e-06 56.2 317 25.2
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.0e-06 56.2 314 25.5
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 5.0e-06 56.2 341 25.5


User provided reference genes

Program Settings