Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 4.8e-97 357.8 180 100.0
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 6.7e-91 337.4 181 94.5
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 3.6e-89 331.6 189 89.4
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.7e-86 322.8 178 88.8
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 7.1e-85 317.4 191 83.2
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 7.1e-85 317.4 191 83.2
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 7.1e-85 317.4 191 83.2
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.6e-84 316.2 191 82.7
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 3.5e-84 315.1 178 88.8
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 7.4e-82 307.4 197 78.7
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 9.6e-82 307.0 196 80.1
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 2.0e-79 299.3 178 84.3
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 3.9e-67 258.5 178 75.8
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 5.3e-64 248.1 152 80.3
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.5e-63 246.5 151 80.1
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 5.9e-63 244.6 168 73.8
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.3e-62 243.4 158 75.3
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.7e-62 243.0 167 73.7
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 2.2e-62 242.7 166 72.9
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 2.2e-62 242.7 153 76.5
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 6.5e-62 241.1 159 73.0
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.9e-61 239.6 166 72.3
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 3.2e-61 238.8 150 76.7
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 9.4e-61 237.3 158 72.8
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 9.4e-61 237.3 170 71.2
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 2.1e-60 236.1 212 61.3
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 2.1e-60 236.1 177 68.9
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 4.6e-60 235.0 152 76.3
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.1e-60 234.6 153 73.2
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.0e-59 233.8 175 68.6
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.4e-59 233.4 163 70.6
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 2.3e-59 232.6 162 72.8
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.3e-59 232.6 185 65.4
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 3.9e-59 231.9 151 73.5
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 5.1e-59 231.5 171 68.4
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 5.1e-59 231.5 166 71.1
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 5.1e-59 231.5 187 65.2
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 5.1e-59 231.5 169 67.5
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-58 230.3 173 67.1
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 3.3e-58 228.8 179 68.2
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 4.4e-58 228.4 151 74.8
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 9.7e-58 227.3 121 91.7
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.3e-57 226.9 163 69.9
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.3e-57 226.9 155 70.3
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 1.7e-57 226.5 151 74.8
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.4e-56 223.4 158 72.8
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.8e-56 223.0 171 65.5
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.4e-56 222.6 175 66.9
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 4.1e-56 221.9 168 67.3
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.2e-55 220.3 203 57.1
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 2.0e-55 219.5 181 63.5
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 2.6e-55 219.2 149 73.8
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 5.9e-55 218.0 160 68.8
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.7e-55 217.6 188 61.2
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.0e-54 217.2 151 69.5
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.0e-54 217.2 155 67.7
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.7e-54 216.5 166 67.5
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.4e-53 213.4 195 59.5
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 2.5e-53 212.6 173 64.2
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.2e-53 212.2 150 69.3
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 7.2e-53 211.1 171 63.7
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 9.4e-53 210.7 151 65.6
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 9.4e-53 210.7 206 56.3
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 6.1e-52 208.0 215 54.4
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.3e-51 206.1 151 69.5
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 2.3e-51 206.1 172 62.8
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 3.9e-51 205.3 153 67.3
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 6.7e-51 204.5 150 68.0
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 2.6e-50 202.6 151 63.6
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 4.4e-50 201.8 165 64.2
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.7e-50 201.4 151 66.2
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.8e-49 199.1 152 66.4
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 6.3e-49 198.0 155 63.2
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 5.3e-48 194.9 154 63.0
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 7.0e-48 194.5 153 65.4
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.6e-47 192.6 150 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 3.5e-47 192.2 171 57.9
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 4.5e-47 191.8 151 65.6
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 7.7e-47 191.0 157 60.5
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 5.0e-46 188.3 173 56.1
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 6.5e-46 188.0 161 57.1
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 6.5e-46 188.0 156 59.6
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 1.1e-45 187.2 152 59.9
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 1.5e-45 186.8 119 75.6
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.5e-45 186.8 148 62.2
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.9e-45 186.4 152 65.1
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 1.9e-45 186.4 165 58.2
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 2.5e-45 186.0 119 77.3
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 3.2e-45 185.7 113 78.8
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 4.2e-45 185.3 152 61.2
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 9.4e-45 184.1 152 63.8
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 9.4e-45 184.1 113 79.6
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 9.4e-45 184.1 171 57.3
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.6e-44 183.3 124 74.2
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.6e-44 183.3 113 79.6
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.1e-44 183.0 153 56.9
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 1.0e-43 180.6 109 79.8
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.8e-43 179.9 159 55.3
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 3.0e-43 179.1 160 60.6
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 4.0e-43 178.7 148 62.2
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 6.7e-43 177.9 112 77.7
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 2.0e-42 176.4 112 77.7
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 2.6e-42 176.0 180 52.8
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 2.6e-42 176.0 168 54.2
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 7.5e-42 174.5 124 72.6
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 9.7e-42 174.1 118 74.6
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.3e-41 173.7 112 74.1
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.3e-41 173.7 112 75.9
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 2.2e-41 172.9 149 58.4
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 4.8e-41 171.8 111 74.8
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 4.8e-41 171.8 111 74.8
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.1e-40 170.6 119 70.6
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.8e-40 169.9 112 73.2
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.8e-40 169.9 164 51.2
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 9.1e-40 167.5 150 58.0
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 5.9e-39 164.9 136 59.6
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.3e-38 163.7 148 56.1
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 8.5e-38 161.0 113 69.9
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 2.5e-37 159.5 142 56.3
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 7.2e-37 157.9 129 62.0
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 1.2e-36 157.1 152 57.2
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 2.1e-36 156.4 176 52.8
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 3.6e-36 155.6 124 61.3
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 4.4e-34 148.7 129 58.9
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.3e-33 144.8 157 51.6
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 9.1e-32 141.0 111 61.3
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.2e-31 140.6 164 53.0
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 3.5e-31 139.0 132 60.6
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.7e-30 136.7 96 66.7
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.1e-29 134.0 164 50.0
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 5.5e-29 131.7 76 81.6
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 6.3e-25 118.2 123 52.8
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 8.3e-25 117.9 122 53.3
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 2.0e-23 113.2 69 75.4
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.5e-23 112.1 156 44.2
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 7.8e-23 111.3 70 75.7
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 3.8e-22 109.0 90 63.3
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.6e-20 103.6 77 58.4
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 3.6e-20 102.4 157 40.1
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.6e-20 102.4 70 70.0
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 5.2e-19 98.6 71 66.2
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.2e-18 97.4 86 60.5
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 5.7e-18 95.1 148 41.9
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 9.2e-16 87.8 122 45.9
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.6e-15 87.0 118 46.6
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 2.0e-15 86.7 55 74.5
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 1.6e-12 77.0 79 54.4
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.3e-11 73.2 47 74.5
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 8.9e-11 71.2 53 62.3
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 9.8e-10 67.8 35 82.9
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 4.9e-09 65.5 45 64.4
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 6.4e-09 65.1 46 63.0
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 1.4e-08 63.9 50 64.0
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 1.9e-08 63.5 37 73.0
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 4.1e-08 62.4 35 80.0
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 4.1e-08 62.4 86 44.2
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 7.0e-08 61.6 44 65.9
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 7.0e-08 61.6 49 59.2
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.2e-07 60.8 47 53.2
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 2.0e-07 60.1 54 55.6
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 3.5e-07 59.3 58 50.0
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.6e-07 58.9 31 83.9
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 6.0e-07 58.5 35 74.3
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 1.3e-06 57.4 42 61.9
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 3.9e-06 55.8 37 67.6
Mapoly0107s0014 Marchantia polymorpha HOM05D004274 ORTHO05D004980 5.0e-06 55.5 36 63.9


User provided reference genes

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