Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 2.3e-143 512.3 269 100.0
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.9e-78 296.6 398 49.7
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 2.5e-78 296.2 387 50.4
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.0e-58 231.1 332 49.1
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 4.2e-57 225.7 301 51.2
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 9.4e-57 224.6 309 52.4
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 4.8e-37 159.1 374 36.9
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 3.1e-36 156.4 396 35.1
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 4.5e-35 152.5 253 42.7
C03p14510 Brassica napus HOM05D012436 ORTHO05D003476 1.0e-34 151.4 391 35.0
BcaB01g04480 Brassica carinata HOM05D012436 ORTHO05D003476 1.5e-33 147.5 386 33.7
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 1.5e-33 147.5 396 34.6
Lsat_1_v5_gn_8_540 Lactuca sativa HOM05D008057 ORTHO05D003476 6.8e-15 85.5 239 29.7
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 2.0e-14 84.0 90 44.4
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 7.5e-14 82.0 234 34.6
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 1.1e-12 78.2 251 26.7
Eucgr.K02337 Eucalyptus grandis HOM05D008057 ORTHO05D003476 5.4e-12 75.9 246 30.1
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 9.2e-12 75.1 99 37.4
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 1.2e-11 74.7 300 26.0
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 1.2e-11 74.7 274 25.9
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 2.7e-11 73.6 157 29.3
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 4.6e-11 72.8 261 26.4
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 4.6e-11 72.8 74 47.3
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 6.0e-11 72.4 57 56.1
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.0e-10 71.6 96 39.6
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 1.0e-10 71.6 262 24.8
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.7e-10 70.9 87 40.2
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 1.7e-10 70.9 87 40.2
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.7e-10 70.9 112 33.0
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 2.3e-10 70.5 132 33.3
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 2.3e-10 70.5 67 49.3
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 3.9e-10 69.7 70 44.3
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 5.0e-10 69.3 76 38.2
Sopen03g029780 Solanum pennellii HOM05D008057 ORTHO05D003476 6.6e-10 68.9 78 43.6
AUR62042766 Chenopodium quinoa HOM05D008057 ORTHO05D003476 8.6e-10 68.6 94 40.4
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 8.6e-10 68.6 171 32.7
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 8.6e-10 68.6 147 33.3
AUR62033080 Chenopodium quinoa HOM05D008057 ORTHO05D003476 1.1e-09 68.2 98 37.8
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.1e-09 68.2 71 46.5
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.5e-09 67.8 92 31.5
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.5e-09 67.8 56 50.0
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.5e-09 67.8 90 35.6
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 1.9e-09 67.4 91 41.8
MD10G1047400 Malus domestica HOM05D015681 ORTHO05D003476 1.9e-09 67.4 59 50.8
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 2.5e-09 67.0 126 35.7
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 2.5e-09 67.0 54 53.7
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 2.5e-09 67.0 51 54.9
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 3.3e-09 66.6 68 44.1
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 3.3e-09 66.6 51 52.9
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 3.3e-09 66.6 119 33.6
Prupe.8G056400 Prunus persica HOM05D015681 ORTHO05D003476 3.3e-09 66.6 59 50.8
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 4.3e-09 66.2 164 31.7
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 5.6e-09 65.9 173 32.9
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 7.3e-09 65.5 288 25.3
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 7.3e-09 65.5 69 44.9
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 9.5e-09 65.1 79 35.4
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 9.5e-09 65.1 56 50.0
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 9.5e-09 65.1 188 27.7
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 9.5e-09 65.1 51 52.9
VMungo0464G0225 Vigna mungo HOM05D008057 ORTHO05D003476 9.5e-09 65.1 191 28.3
SGA_v2.0_scaffold28G11776 Striga asiatica HOM05D008057 ORTHO05D003476 1.2e-08 64.7 86 37.2
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 1.6e-08 64.3 225 28.9
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 1.6e-08 64.3 63 52.4
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 1.6e-08 64.3 48 54.2
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.6e-08 64.3 72 40.3
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 2.1e-08 63.9 207 30.4
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 2.1e-08 63.9 134 32.8
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 2.8e-08 63.5 254 25.2
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 3.6e-08 63.2 74 39.2
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 4.7e-08 62.8 65 40.0
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 4.7e-08 62.8 134 32.1
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 6.2e-08 62.4 52 48.1
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 6.2e-08 62.4 157 30.6
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 6.2e-08 62.4 52 48.1
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 8.1e-08 62.0 52 46.2
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 8.1e-08 62.0 52 44.2
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 8.1e-08 62.0 52 44.2
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 8.1e-08 62.0 206 26.7
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 8.1e-08 62.0 86 37.2
Ah.09g232210 Amaranthus hybridus HOM05D002613 ORTHO05D003140 1.1e-07 61.6 182 29.7
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 1.1e-07 61.6 171 28.1
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 1.4e-07 61.2 127 29.1
FAN08G2522 Fragaria x ananassa HOM05D015681 ORTHO05D003476 1.4e-07 61.2 59 47.5
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.4e-07 61.2 52 48.1
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 1.8e-07 60.8 52 44.2
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 1.8e-07 60.8 52 44.2
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 1.8e-07 60.8 52 44.2
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.8e-07 60.8 52 44.2
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 1.8e-07 60.8 52 46.2
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 1.8e-07 60.8 52 46.2
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 1.8e-07 60.8 78 35.9
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 1.8e-07 60.8 41 63.4
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.8e-07 60.8 65 40.0
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 2.3e-07 60.5 52 46.2
HanXRQChr08g0226101 Helianthus annuus HOM05D008057 ORTHO05D003476 2.3e-07 60.5 75 36.0
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 2.3e-07 60.5 65 41.5
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 2.3e-07 60.5 267 25.8
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 2.3e-07 60.5 52 46.2
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 2.3e-07 60.5 52 46.2
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 2.3e-07 60.5 114 31.6
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 2.3e-07 60.5 114 31.6
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 3.1e-07 60.1 65 40.0
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 3.1e-07 60.1 52 44.2
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 4.0e-07 59.7 56 41.1
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 4.0e-07 59.7 217 26.3
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 4.0e-07 59.7 52 44.2
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 4.0e-07 59.7 52 44.2
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 4.0e-07 59.7 52 46.2
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 4.0e-07 59.7 52 46.2
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 4.0e-07 59.7 251 25.1
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 4.0e-07 59.7 67 47.8
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 5.2e-07 59.3 52 44.2
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 5.2e-07 59.3 52 44.2
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 5.2e-07 59.3 134 27.6
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 5.2e-07 59.3 235 25.5
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 5.2e-07 59.3 176 26.7
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 5.2e-07 59.3 52 44.2
HPP92_025600 Vanilla planifolia HOM05D061565 ORTHO05D003476 5.2e-07 59.3 65 40.0
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 5.2e-07 59.3 52 44.2
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 6.8e-07 58.9 73 39.7
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 6.8e-07 58.9 52 44.2
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 6.8e-07 58.9 52 40.4
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 6.8e-07 58.9 136 33.1
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 8.9e-07 58.5 52 42.3
CANSAT80G0398 Cannabis sativa HOM05D008057 ORTHO05D003476 8.9e-07 58.5 77 40.3
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 8.9e-07 58.5 126 33.3
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 8.9e-07 58.5 187 28.9
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 8.9e-07 58.5 56 42.9
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 8.9e-07 58.5 52 42.3
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.2e-06 58.2 52 42.3
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.2e-06 58.2 77 40.3
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 1.2e-06 58.2 52 44.2
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 1.2e-06 58.2 214 27.6
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 1.5e-06 57.8 52 42.3
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 1.5e-06 57.8 52 42.3
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.5e-06 57.8 52 42.3
Oeu050291.1 Olea europaea HOM05D008057 ORTHO05D003476 1.5e-06 57.8 41 58.5
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 1.5e-06 57.8 52 44.2
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 2.0e-06 57.4 52 42.3
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 2.0e-06 57.4 209 23.9
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 2.6e-06 57.0 220 27.7
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 2.6e-06 57.0 52 46.2
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 2.6e-06 57.0 185 30.3
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 2.6e-06 57.0 182 28.0
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 2.6e-06 57.0 182 28.0
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 2.6e-06 57.0 62 41.9
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 2.6e-06 57.0 52 42.3
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 3.4e-06 56.6 212 26.4
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 3.4e-06 56.6 52 42.3
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 3.4e-06 56.6 52 44.2
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 4.4e-06 56.2 273 25.3
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 4.4e-06 56.2 73 38.4
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 4.4e-06 56.2 126 26.2
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 5.8e-06 55.8 244 22.5
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 7.5e-06 55.5 226 23.5
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 7.5e-06 55.5 267 26.6
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 9.9e-06 55.1 170 26.5
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 9.9e-06 55.1 121 30.6
vmacro12841 Vaccinium macrocarpon HOM05D008057 ORTHO05D003476 9.9e-06 55.1 43 55.8
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 9.9e-06 55.1 186 28.0


User provided reference genes

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