Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 1.8e-105 386.0 197 100.0
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 3.5e-101 371.7 197 96.4
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 5.9e-101 370.9 197 96.4
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 1.8e-97 359.4 198 93.9
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 1.9e-94 349.4 197 90.9
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 5.4e-94 347.8 198 91.4
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 1.6e-90 336.3 196 89.3
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 2.8e-90 335.5 196 89.3
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 1.1e-89 333.6 196 88.3
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 3.1e-89 332.0 194 89.2
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 3.1e-89 332.0 194 89.2
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 3.1e-89 332.0 194 89.2
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 2.0e-88 329.3 196 87.2
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 4.4e-88 328.2 194 88.1
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 7.5e-88 327.4 197 87.3
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 3.7e-87 325.1 185 89.7
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 1.4e-86 323.2 194 87.1
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 1.3e-84 316.6 188 86.2
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 4.3e-83 311.6 201 82.1
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 3.3e-75 285.4 197 75.6
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 1.3e-68 263.5 194 67.5
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 2.5e-67 259.2 194 66.5
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.3e-66 256.9 198 66.2
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.3e-66 256.9 193 65.3
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.3e-66 256.9 195 64.6
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 1.3e-66 256.9 190 66.3
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 6.2e-66 254.6 195 64.1
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 1.4e-65 253.4 192 65.6
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 2.4e-65 252.7 198 63.1
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 3.1e-65 252.3 197 64.0
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 4.0e-65 251.9 192 65.6
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 4.0e-65 251.9 196 64.8
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 6.9e-65 251.1 197 63.5
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 9.0e-65 250.8 189 64.0
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.2e-64 250.4 193 65.8
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 1.2e-64 250.4 198 65.2
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 1.5e-64 250.0 193 65.3
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.4e-64 248.8 197 63.5
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 4.4e-64 248.4 194 65.5
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 4.4e-64 248.4 197 63.5
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 5.8e-64 248.1 193 65.3
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 5.8e-64 248.1 199 64.8
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 7.6e-64 247.7 195 63.6
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 9.9e-64 247.3 193 63.2
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.3e-63 246.9 198 63.6
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.2e-63 246.1 190 66.3
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 3.8e-63 245.4 199 64.8
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 4.9e-63 245.0 193 63.7
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 8.4e-63 244.2 197 62.4
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 3.2e-62 242.3 199 60.8
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 4.2e-62 241.9 199 60.8
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 5.4e-62 241.5 186 67.7
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 1.6e-61 240.0 198 62.6
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.6e-61 240.0 191 63.4
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 2.1e-61 239.6 194 62.9
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 6.0e-61 238.0 186 66.1
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 7.8e-61 237.7 189 61.4
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 7.8e-61 237.7 189 61.9
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 7.8e-61 237.7 189 61.4
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 7.8e-61 237.7 198 60.6
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.0e-60 237.3 196 61.2
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.3e-60 236.9 198 61.1
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 1.7e-60 236.5 198 63.1
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 3.0e-60 235.7 190 62.1
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.5e-59 233.4 197 60.9
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 1.5e-59 233.4 198 60.6
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.9e-59 233.0 193 62.7
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 2.8e-58 229.2 197 61.9
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 2.8e-58 229.2 188 59.0
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 3.6e-58 228.8 197 61.9
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 3.6e-58 228.8 192 60.4
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 6.2e-58 228.0 186 59.1
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 6.2e-58 228.0 187 58.8
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.4e-57 226.9 205 59.0
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.8e-57 226.5 240 52.1
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 5.3e-57 224.9 214 53.7
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 1.5e-56 223.4 197 58.9
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 1.5e-56 223.4 191 59.7
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 3.4e-56 222.2 187 58.8
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 7.6e-56 221.1 275 46.2
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 9.9e-56 220.7 193 58.5
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 1.3e-55 220.3 197 58.9
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 1.3e-55 220.3 251 50.2
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 4.2e-54 215.3 197 58.4
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 5.4e-54 214.9 149 67.8
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.4e-54 214.9 163 65.0
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 4.6e-53 211.8 193 55.4
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 2.3e-52 209.5 194 56.7
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.1e-50 203.0 194 51.0
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 4.8e-50 201.8 195 57.9
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 3.1e-49 199.1 186 56.5
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 1.2e-48 197.2 227 48.5
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 2.6e-48 196.1 298 41.6
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 3.4e-48 195.7 142 66.2
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 3.4e-48 195.7 146 67.8
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 7.1e-46 188.0 187 55.1
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.2e-45 187.2 179 50.8
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 2.7e-45 186.0 197 53.3
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 3.0e-44 182.6 331 37.5
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 1.6e-42 176.8 152 59.2
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 1.6e-42 176.8 156 58.3
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.8e-42 176.0 197 48.7
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.4e-41 173.7 148 60.1
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.0e-40 169.9 198 47.0
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 5.8e-40 168.3 121 65.3
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 1.9e-38 163.3 194 45.9
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 1.6e-37 160.2 146 54.1
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.1e-35 154.1 123 64.2
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 1.5e-35 153.7 194 47.4
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 2.2e-34 149.8 109 66.1
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 3.4e-32 142.5 99 66.7
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 7.7e-32 141.4 189 41.8
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 3.3e-27 125.9 94 61.7
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 1.4e-25 120.6 98 61.2
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 3.1e-25 119.4 100 56.0
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 1.0e-23 114.4 186 39.2
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.1e-22 110.9 121 49.6
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.6e-21 107.1 136 49.3
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.2e-18 96.7 150 37.3
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 4.8e-18 95.5 80 57.5
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 2.6e-16 89.7 69 59.4
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 5.9e-16 88.6 75 60.0
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 5.9e-16 88.6 203 34.0
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 2.2e-15 86.7 56 78.6
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 5.0e-15 85.5 54 79.6
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 5.0e-15 85.5 54 79.6
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.2e-14 81.6 89 48.3
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 2.7e-13 79.7 90 45.6
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 8.0e-13 78.2 89 43.8
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.0e-12 77.8 190 33.2
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.0e-12 76.3 89 43.8
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 5.2e-12 75.5 57 63.2
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 2.8e-10 69.7 70 55.7
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.8e-10 68.9 52 59.6
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 8.2e-10 68.2 57 61.4
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.6e-08 63.9 49 61.2
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.6e-08 63.2 86 45.3


User provided reference genes

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