Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1844 Capsella rubella HOM05D003759 ORTHO05D004149 1.0e-103 380.2 209 100.0
AT5G57910 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 1.4e-76 290.0 212 73.6
Thhalv10014665m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 1.0e-74 283.9 222 71.2
BcaB05g22386 Brassica carinata HOM05D003759 ORTHO05D004149 2.3e-66 256.1 215 66.5
C02p13760 Brassica napus HOM05D003759 ORTHO05D004149 2.3e-66 256.1 215 66.5
BolC2t07494H Brassica oleracea HOM05D003759 ORTHO05D004149 2.3e-66 256.1 215 66.5
BcaB05g22385 Brassica carinata HOM05D003759 ORTHO05D004149 5.0e-66 255.0 220 66.8
A03p12490 Brassica napus HOM05D003759 ORTHO05D004149 1.2e-64 250.4 223 66.4
C09p49780 Brassica napus HOM05D003759 ORTHO05D004149 1.8e-63 246.5 215 66.0
BolC3t13911H Brassica oleracea HOM05D003759 ORTHO05D004149 1.8e-63 246.5 223 64.6
A02p08110 Brassica napus HOM05D003759 ORTHO05D004149 6.8e-63 244.6 218 63.8
BolC9t57829H Brassica oleracea HOM05D003759 ORTHO05D004149 6.8e-63 244.6 215 65.6
BraA02t05884Z Brassica rapa HOM05D003759 ORTHO05D004149 6.8e-63 244.6 218 63.8
C03p14700 Brassica napus HOM05D003759 ORTHO05D004149 8.9e-63 244.2 223 64.1
AL8G33980 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 3.4e-62 242.3 172 75.0
A10p15270 Brassica napus HOM05D003759 ORTHO05D004149 1.1e-60 237.3 215 64.7
BraA10t43608Z Brassica rapa HOM05D003759 ORTHO05D004149 2.4e-60 236.1 215 64.2
CARHR271690 Cardamine hirsuta HOM05D003759 ORTHO05D004149 1.3e-58 230.3 212 64.2
Aa31LG3G13740 Aethionema arabicum HOM05D003759 ORTHO05D004149 8.6e-58 227.6 209 62.7
BraA03t10564Z Brassica rapa HOM05D003759 ORTHO05D004149 1.1e-57 227.3 223 62.3
Sp6g19580 Schrenkiella parvula HOM05D003759 ORTHO05D004149 6.0e-51 204.9 164 68.9
BcaB01g04466 Brassica carinata HOM05D003759 ORTHO05D004149 5.1e-50 201.8 186 65.6
THA.LOC104813538 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 4.0e-31 139.0 207 42.5
Sp7g28510 Schrenkiella parvula HOM05D003759 ORTHO05D004149 1.2e-19 100.9 241 35.3
THA.LOC104819991 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 2.7e-19 99.8 246 34.1
Lj4g0026574 Lotus japonicus HOM05D003759 ORTHO05D004149 1.8e-18 97.1 257 35.4
CANSAT11G0712 Cannabis sativa HOM05D003759 ORTHO05D004149 3.0e-18 96.3 255 33.7
Psat4g009880 Pisum sativum HOM05D003759 ORTHO05D004149 1.1e-17 94.4 253 35.6
A03p60150 Brassica napus HOM05D003759 ORTHO05D004149 1.9e-17 93.6 221 35.3
BraA03t15060Z Brassica rapa HOM05D003759 ORTHO05D004149 1.9e-17 93.6 221 35.3
BcaNung00572 Brassica carinata HOM05D003759 ORTHO05D004149 2.5e-17 93.2 221 35.3
A01p07630 Brassica napus HOM05D003759 ORTHO05D004149 3.3e-17 92.8 214 34.6
C07p58060 Brassica napus HOM05D000058 ORTHO05D000077 3.3e-17 92.8 221 34.8
BolC7t46265H Brassica oleracea HOM05D003759 ORTHO05D004149 3.3e-17 92.8 221 34.8
BcaNung02973 Brassica carinata HOM05D003759 ORTHO05D004149 4.3e-17 92.4 224 35.7
BraA01t00706Z Brassica rapa HOM05D003759 ORTHO05D004149 4.3e-17 92.4 214 34.6
TPR.G24855 Trifolium pratense HOM05D003759 ORTHO05D004149 9.6e-17 91.3 254 32.7
BolC1t00818H Brassica oleracea HOM05D003759 ORTHO05D004149 1.3e-16 90.9 214 34.1
Gohir.A08G252100 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.1e-16 90.1 205 36.6
BcaC09g51852 Brassica carinata HOM05D003759 ORTHO05D004149 2.8e-16 89.7 217 34.1
C01p08320 Brassica napus HOM05D003759 ORTHO05D004149 2.8e-16 89.7 215 34.4
Glyma.17G073100 Glycine max HOM05D003759 ORTHO05D004149 2.8e-16 89.7 253 32.8
Medtr4g130700 Medicago truncatula HOM05D003759 ORTHO05D004149 3.7e-16 89.4 261 32.2
THA.LOC104803918 Tarenaya hassleriana HOM05D003759 ORTHO05D004149 3.7e-16 89.4 247 31.2
VMungo1215G0492 Vigna mungo HOM05D003759 ORTHO05D004149 4.8e-16 89.0 255 32.5
PGR102G0437 Punica granatum HOM05D003759 ORTHO05D004149 6.2e-16 88.6 268 31.0
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 6.2e-16 88.6 199 35.7
Cpa.g.sc46.168 Carica papaya HOM05D003759 ORTHO05D004149 1.4e-15 87.4 263 34.6
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 1.8e-15 87.0 264 31.4
Phvul.003G155300 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 1.8e-15 87.0 255 32.5
vmacro06067 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 2.4e-15 86.7 305 29.2
BcaNung04561 Brassica carinata HOM05D003759 ORTHO05D004149 4.0e-15 85.9 229 31.4
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 4.0e-15 85.9 254 31.1
Phvul.009G204700 Phaseolus vulgaris HOM05D003759 ORTHO05D004149 4.0e-15 85.9 245 32.2
HanXRQChr10g0313651 Helianthus annuus HOM05D003759 ORTHO05D004149 6.9e-15 85.1 237 34.2
Gohir.D08G273700 Gossypium hirsutum HOM05D003759 ORTHO05D004149 9.0e-15 84.7 256 31.2
Sabra06G0139200 Salix brachista HOM05D003759 ORTHO05D004149 9.0e-15 84.7 258 31.0
Glyma.02G204900 Glycine max HOM05D003759 ORTHO05D004149 1.5e-14 84.0 255 30.6
COL.COLO4_18822 Corchorus olitorius HOM05D003759 ORTHO05D004149 2.0e-14 83.6 254 30.7
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 2.6e-14 83.2 259 32.4
Sabra18G0089900 Salix brachista HOM05D003759 ORTHO05D004149 2.6e-14 83.2 130 40.8
SGA_v2.0_scaffold45G17024 Striga asiatica HOM05D003759 ORTHO05D004149 3.4e-14 82.8 271 32.1
Ca_21134_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 4.5e-14 82.4 250 32.0
Ca_21136_v3 Cicer arietinum L. HOM05D003759 ORTHO05D004149 4.5e-14 82.4 250 32.0
Peaxi162Scf00062g00131 Petunia axillaris HOM05D003759 ORTHO05D004149 4.5e-14 82.4 281 28.5
Potri.018G105300 Populus trichocarpa HOM05D003759 ORTHO05D004149 7.6e-14 81.6 130 37.7
Migut.J01364 Erythranthe guttata HOM05D003759 ORTHO05D004149 1.0e-13 81.3 271 31.4
Gorai.004G292200 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.0e-13 81.3 256 31.6
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 1.0e-13 81.3 200 35.0
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 1.3e-13 80.9 199 34.7
AL7G21510 Arabidopsis lyrata HOM05D003759 ORTHO05D004149 2.9e-13 79.7 239 33.9
Migut.K00316 Erythranthe guttata HOM05D003759 ORTHO05D004149 5.0e-13 79.0 224 33.5
Lalb_Chr08g0234281 Lupinus albus HOM05D003759 ORTHO05D004149 5.0e-13 79.0 247 30.0
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 8.4e-13 78.2 253 30.4
VMungo1309G0866 Vigna mungo HOM05D003759 ORTHO05D004149 8.4e-13 78.2 248 31.9
Aa31LG2G19870 Aethionema arabicum HOM05D003759 ORTHO05D004149 1.1e-12 77.8 214 31.8
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 1.1e-12 77.8 123 37.4
Lj6g0003054 Lotus japonicus HOM05D003759 ORTHO05D004149 1.4e-12 77.4 256 30.5
Lalb_Chr13g0300821 Lupinus albus HOM05D003759 ORTHO05D004149 1.4e-12 77.4 255 30.2
Rhsim03G0257600 Rhododendron simsii HOM05D003759 ORTHO05D004149 2.5e-12 76.6 300 25.7
ClCG02G014430 Citrullus lanatus HOM05D003759 ORTHO05D004149 5.5e-12 75.5 252 31.0
Gohir.D05G054500 Gossypium hirsutum HOM05D003759 ORTHO05D004149 5.5e-12 75.5 253 30.8
Duzib150G1598 Durio zibethinus HOM05D003759 ORTHO05D004149 7.1e-12 75.1 244 29.1
Gohir.D07G031400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.2e-11 74.3 264 29.2
Gorai.001G032800 Gossypium raimondii HOM05D003759 ORTHO05D004149 1.2e-11 74.3 264 29.2
Thecc.09G028600 Theobroma cacao HOM05D003759 ORTHO05D004149 1.2e-11 74.3 260 29.2
Actinidia24379 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.6e-11 73.9 128 34.4
Aqoxy7G03381 Aquilegia oxysepala HOM05D003759 ORTHO05D004149 2.1e-11 73.6 199 31.7
MSTRG.6151 Avicennia marina HOM05D003759 ORTHO05D004149 2.1e-11 73.6 293 25.9
Atru.chr7.24 Acer truncatum HOM05D003759 ORTHO05D004149 3.5e-11 72.8 252 30.2
Gorai.009G056200 Gossypium raimondii HOM05D003759 ORTHO05D004149 3.5e-11 72.8 253 30.4
HPP92_018342 Vanilla planifolia HOM05D003759 ORTHO05D004149 4.6e-11 72.4 199 32.7
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 6.1e-11 72.0 246 29.3
Prupe.7G264400 Prunus persica HOM05D003759 ORTHO05D004149 7.9e-11 71.6 258 29.8
Gohir.A05G052900 Gossypium hirsutum HOM05D003759 ORTHO05D004149 1.0e-10 71.2 253 30.4
QL02p093514 Quercus lobata HOM05D003759 ORTHO05D004149 1.0e-10 71.2 254 29.5
AT4G30630 Arabidopsis thaliana HOM05D003759 ORTHO05D004149 1.3e-10 70.9 248 31.9
CAN.G160.50 Capsicum annuum HOM05D003759 ORTHO05D004149 1.3e-10 70.9 287 28.6
Gohir.A07G027400 Gossypium hirsutum HOM05D003759 ORTHO05D004149 2.3e-10 70.1 264 28.8
Nitab4.5_0002891g0100 Nicotiana tabacum HOM05D003759 ORTHO05D004149 2.3e-10 70.1 291 27.1
Eucgr.C00252 Eucalyptus grandis HOM05D003759 ORTHO05D004149 3.0e-10 69.7 134 32.1
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 5.1e-10 68.9 281 28.1
SGA_v2.0_scaffold265G46100 Striga asiatica HOM05D003759 ORTHO05D004149 6.7e-10 68.6 282 29.4
Carub.0007s0993 Capsella rubella HOM05D003759 ORTHO05D004149 8.7e-10 68.2 215 30.2
Actinidia01426 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.1e-09 67.8 72 48.6
Nitab4.5_0005869g0060 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.1e-09 67.8 285 27.4
TWI34G0689 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 1.1e-09 67.8 256 29.7
CsaV3_1G029030 Cucumis sativus L. HOM05D003759 ORTHO05D004149 1.5e-09 67.4 253 26.5
SalBow1G3284 Salvia bowleyana HOM05D003759 ORTHO05D004149 1.5e-09 67.4 289 29.1
MELO3C004129.2 Cucumis melo HOM05D003759 ORTHO05D004149 1.9e-09 67.0 268 30.2
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 2.5e-09 66.6 193 31.6
Lalb_Chr12g0198751 Lupinus albus HOM05D003759 ORTHO05D004149 4.3e-09 65.9 247 27.1
TWI32G1309 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 4.3e-09 65.9 255 28.6
unitig_748.g7198 Utricularia gibba HOM05D003759 ORTHO05D004149 4.3e-09 65.9 243 31.3
CARHR238510 Cardamine hirsuta HOM05D003759 ORTHO05D004149 5.7e-09 65.5 249 29.7
Cfa020811 Carpinus fangiana HOM05D003759 ORTHO05D004149 7.4e-09 65.1 278 28.1
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 7.4e-09 65.1 55 58.2
Rhsim01G0028200 Rhododendron simsii HOM05D003759 ORTHO05D004149 7.4e-09 65.1 98 38.8
vmacro16796 Vaccinium macrocarpon HOM05D003759 ORTHO05D004149 7.4e-09 65.1 55 56.4
Ciclev10009224m.g Citrus clementina HOM05D003759 ORTHO05D004149 1.3e-08 64.3 252 29.8
MELO3C010213.2 Cucumis melo HOM05D003759 ORTHO05D004149 1.6e-08 63.9 254 25.6
Nitab4.5_0001571g0070 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.6e-08 63.9 277 24.9
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 1.6e-08 63.9 191 29.8
Solyc12g009970.2 Solanum lycopersicum HOM05D003759 ORTHO05D004149 1.6e-08 63.9 294 26.9
Sopen12g004840 Solanum pennellii HOM05D003759 ORTHO05D004149 2.2e-08 63.5 294 26.9
Actinidia38668 Actinidia chinensis HOM05D003759 ORTHO05D004149 2.8e-08 63.2 119 34.5
ClCG06G012480 Citrullus lanatus HOM05D003759 ORTHO05D004149 2.8e-08 63.2 256 26.6
TWI63G0632 Tripterygium wilfordii HOM05D003759 ORTHO05D004149 3.7e-08 62.8 124 33.9
Actinidia38317 Actinidia chinensis HOM05D003759 ORTHO05D004149 1.4e-07 60.8 297 25.9
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 1.4e-07 60.8 82 40.2
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 1.4e-07 60.8 246 27.2
MD15G1151500 Malus domestica HOM05D003759 ORTHO05D004149 1.4e-07 60.8 251 27.1
Nitab4.5_0008875g0010 Nicotiana tabacum HOM05D003759 ORTHO05D004149 1.4e-07 60.8 286 25.5
Sopen07g001800 Solanum pennellii HOM05D003759 ORTHO05D004149 1.4e-07 60.8 286 25.9
Oeu021304.1 Olea europaea HOM05D003759 ORTHO05D004149 1.8e-07 60.5 274 24.8
CiPaw.15G166900 Carya illinoinensis HOM05D003759 ORTHO05D004149 3.1e-07 59.7 271 27.7
CSS0036931 Camellia sinensis var. sinensis HOM05D003759 ORTHO05D004149 4.1e-07 59.3 133 34.6
CAN.G551.47 Capsicum annuum HOM05D003759 ORTHO05D004149 4.1e-07 59.3 282 28.0
Thhalv10026294m.g Eutrema salsugineum HOM05D003759 ORTHO05D004149 5.3e-07 58.9 212 29.7
HanXRQChr03g0065561 Helianthus annuus HOM05D003759 ORTHO05D004149 6.9e-07 58.5 227 26.9
Lsat_1_v5_gn_5_90100 Lactuca sativa HOM05D003759 ORTHO05D004149 6.9e-07 58.5 217 29.5
arahy.Tifrunner.gnm1.ann1.5MW7KS Arachis hypogaea HOM05D003759 ORTHO05D004149 9.0e-07 58.2 250 27.6
arahy.Tifrunner.gnm1.ann1.WN4J7U Arachis hypogaea HOM05D003759 ORTHO05D004149 9.0e-07 58.2 250 27.2
SalBow1G6739 Salvia bowleyana HOM05D003759 ORTHO05D004149 9.0e-07 58.2 299 25.4
Oeu028997.1 Olea europaea HOM05D003759 ORTHO05D004149 1.2e-06 57.8 212 28.8
Zm00001eb412280 Zea mays HOM05D037779 ORTHO05D004149 2.0e-06 57.0 198 32.3
Sed0003883 Sechium edule HOM05D003759 ORTHO05D004149 2.6e-06 56.6 85 35.3
PGSC0003DMG400011142 Solanum tuberosum HOM05D003759 ORTHO05D004149 2.6e-06 56.6 285 25.6
Solyc07g005690.3 Solanum lycopersicum HOM05D003759 ORTHO05D004149 3.4e-06 56.2 57 49.1
PGSC0003DMG400007832 Solanum tuberosum HOM05D003759 ORTHO05D004149 3.4e-06 56.2 135 32.6
Os08g0270800 Oryza sativa ssp. japonica HOM05D037779 ORTHO05D004149 4.5e-06 55.8 197 29.9
Sed0022175 Sechium edule HOM05D003759 ORTHO05D004149 4.5e-06 55.8 126 28.6
unitig_0.g2686 Utricularia gibba HOM05D003759 ORTHO05D004149 4.5e-06 55.8 256 27.3
HanXRQChr09g0244591 Helianthus annuus HOM05D003759 ORTHO05D004149 5.9e-06 55.5 250 28.4
Hma1.2p1_0222F.1_g093653 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 1.0e-05 54.7 140 31.4
Hma1.2p1_0222F.1_g093656 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 1.0e-05 54.7 118 37.3
Hma1.2p1_2680F.1_g326800 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 1.0e-05 54.7 118 37.3
Hma1.2p1_2680F.1_g326810 Hydrangea macrophylla HOM05D003759 ORTHO05D004149 1.0e-05 54.7 140 31.4


User provided reference genes

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