Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 9.7e-126 453.4 211 100.0
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 2.9e-114 415.2 207 92.8
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 1.9e-113 412.5 207 91.8
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 7.2e-113 410.6 207 91.8
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 6.1e-112 407.5 207 90.8
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 3.0e-111 405.2 207 90.3
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 5.2e-111 404.4 207 91.3
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 2.6e-110 402.1 204 91.2
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 5.7e-110 401.0 204 90.7
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 1.4e-108 396.4 207 88.9
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 6.4e-101 370.9 199 84.9
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 1.9e-100 369.4 210 81.4
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 1.1e-97 360.1 198 81.3
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 1.5e-97 359.8 198 82.3
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 2.5e-97 359.0 198 83.3
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 4.3e-97 358.2 197 81.2
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 5.6e-97 357.8 199 81.9
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 7.3e-97 357.5 196 83.7
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 9.5e-97 357.1 201 80.1
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 2.1e-96 355.9 198 81.8
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 3.6e-96 355.1 200 79.5
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 4.7e-96 354.8 198 79.8
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.1e-95 353.6 199 81.9
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 1.1e-95 353.6 200 80.0
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.4e-95 353.2 201 78.6
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 6.8e-95 350.9 198 78.8
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 8.9e-95 350.5 198 79.8
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 8.9e-95 350.5 198 80.8
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 1.2e-94 350.1 204 78.9
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 1.2e-94 350.1 199 79.4
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 2.0e-94 349.4 198 80.8
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 2.0e-94 349.4 199 81.4
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 2.0e-94 349.4 196 81.1
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 2.6e-94 349.0 198 81.8
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 2.6e-94 349.0 198 80.3
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 3.4e-94 348.6 200 77.5
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 5.8e-94 347.8 198 78.8
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 7.5e-94 347.4 204 78.9
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 9.8e-94 347.1 196 81.6
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 9.8e-94 347.1 198 80.3
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 9.8e-94 347.1 198 80.3
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 9.8e-94 347.1 196 81.1
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 1.3e-93 346.7 198 78.8
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 1.7e-93 346.3 196 80.6
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 1.7e-93 346.3 198 79.8
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 2.2e-93 345.9 198 79.8
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 2.9e-93 345.5 200 78.0
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.9e-93 345.5 196 79.1
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 2.9e-93 345.5 198 77.8
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 3.7e-93 345.1 198 79.3
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 3.7e-93 345.1 198 78.8
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 4.9e-93 344.7 199 78.9
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 6.4e-93 344.4 206 76.7
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.4e-93 344.4 200 77.5
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 6.4e-93 344.4 198 78.3
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 8.3e-93 344.0 200 76.0
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 8.3e-93 344.0 200 78.0
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 8.3e-93 344.0 200 78.0
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 8.3e-93 344.0 203 76.4
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.1e-92 343.6 199 78.9
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 1.9e-92 342.8 198 79.8
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.4e-92 342.4 200 78.0
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 3.2e-92 342.0 199 77.9
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 3.2e-92 342.0 198 78.8
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 5.4e-92 341.3 199 77.4
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 7.1e-92 340.9 201 76.1
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 1.6e-91 339.7 196 79.6
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 3.5e-91 338.6 199 76.9
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 6.0e-91 337.8 198 75.3
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 6.0e-91 337.8 200 75.5
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 7.8e-91 337.4 203 76.4
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 7.8e-91 337.4 204 75.0
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 2.3e-90 335.9 199 77.4
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 2.3e-90 335.9 197 77.2
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 3.9e-90 335.1 200 74.5
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 3.9e-90 335.1 196 75.5
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 1.1e-89 333.6 199 75.4
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 1.1e-89 333.6 194 76.3
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 1.5e-89 333.2 201 77.1
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 1.9e-89 332.8 198 76.3
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.9e-89 332.8 199 74.9
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 2.5e-89 332.4 200 74.5
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 2.5e-89 332.4 198 76.8
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 4.3e-89 331.6 199 74.4
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 4.3e-89 331.6 199 75.4
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 5.6e-89 331.3 199 73.4
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 5.6e-89 331.3 199 75.9
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 7.3e-89 330.9 200 75.5
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 2.8e-88 328.9 199 74.9
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 2.8e-88 328.9 201 74.1
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 4.7e-88 328.2 199 74.9
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 4.7e-88 328.2 200 75.5
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 8.1e-88 327.4 198 71.2
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 2.3e-87 325.9 202 70.8
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.3e-87 325.9 195 73.3
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 8.9e-87 323.9 200 72.5
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.5e-86 323.2 198 73.2
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 3.4e-86 322.0 204 70.6
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.3e-85 320.1 198 72.2
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 2.9e-85 318.9 199 72.9
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 5.4e-84 314.7 198 71.7
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 1.6e-83 313.2 198 75.3
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 2.1e-83 312.8 198 74.2
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 2.7e-83 312.4 198 71.7
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 7.3e-81 304.3 202 66.3
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 1.2e-80 303.5 165 82.4
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.6e-80 303.1 200 65.0
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 2.4e-76 289.3 198 65.2
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 1.3e-74 283.5 197 62.9
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 2.3e-74 282.7 202 60.9
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 6.2e-72 274.6 199 66.3
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.2e-70 270.4 199 65.3
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 5.8e-70 268.1 199 64.8
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 7.1e-68 261.2 199 64.8
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 9.3e-68 260.8 229 59.4
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 9.3e-68 260.8 229 59.4
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 1.0e-66 257.3 199 64.8
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 3.0e-66 255.8 202 55.0
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.6e-64 250.0 198 54.5
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 1.6e-64 250.0 145 78.6
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 2.8e-64 249.2 198 61.1
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.6e-64 248.8 330 43.0
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 1.1e-63 247.3 200 55.5
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 4.8e-48 195.3 104 85.6
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 7.1e-44 181.4 98 84.7
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.3e-42 176.4 199 49.2
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.0e-42 176.0 102 75.5
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 2.8e-40 169.5 97 73.2
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.0e-34 149.4 97 69.1
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 5.1e-34 148.7 87 75.9
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 1.4e-31 140.6 202 37.1
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 4.2e-28 129.0 85 65.9
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 6.1e-27 125.2 73 76.7
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 2.8e-24 116.3 72 70.8
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 2.8e-08 63.2 40 67.5
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.8e-08 62.4 44 61.4


User provided reference genes

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