Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1815 Capsella rubella HOM05D003879 ORTHO05D003858 2.8e-112 408.7 216 100.0
AT5G57640 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 4.8e-35 152.1 226 46.9
BcaC04g19944 Brassica carinata HOM05D015339 ORTHO05D003858 3.5e-30 136.0 229 41.5
BolC9t57805H Brassica oleracea HOM05D015339 ORTHO05D003858 3.5e-30 136.0 229 41.5
A10p15050 Brassica napus HOM05D015339 ORTHO05D003858 6.0e-30 135.2 229 41.9
C09p49520 Brassica napus HOM05D015339 ORTHO05D003858 1.8e-29 133.7 229 41.0
BcaB08g36120 Brassica carinata HOM05D015339 ORTHO05D003858 1.6e-27 127.1 232 40.5
BraA10t43587Z Brassica rapa HOM05D015339 ORTHO05D003858 2.8e-27 126.3 228 39.9
AT5G57570 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 8.4e-24 114.8 149 45.6
Lalb_Chr09g0329191 Lupinus albus HOM05D003879 ORTHO05D003858 8.7e-13 78.2 85 44.7
vmacro16344 Vaccinium macrocarpon HOM05D003879 ORTHO05D003858 1.9e-12 77.0 120 36.7
MBI07_g22385_MAGBIO Magnolia biondii HOM05D003879 ORTHO05D003858 3.3e-12 76.3 128 37.5
AL1G25920 Arabidopsis lyrata HOM05D003879 ORTHO05D003858 4.3e-12 75.9 80 46.2
HanXRQChr12g0361951 Helianthus annuus HOM05D003879 ORTHO05D003858 5.7e-12 75.5 102 42.2
BcaC07g38717 Brassica carinata HOM05D003879 ORTHO05D003858 7.4e-12 75.1 92 41.3
C08p16470 Brassica napus HOM05D003879 ORTHO05D003858 7.4e-12 75.1 92 41.3
CDE07G0815 Ceratophyllum demersum HOM05D003879 ORTHO05D003858 7.4e-12 75.1 74 45.9
Lj4g0023987 Lotus japonicus HOM05D003879 ORTHO05D003858 7.4e-12 75.1 82 41.5
AT1G14060 Arabidopsis thaliana HOM05D003879 ORTHO05D003858 9.6e-12 74.7 80 45.0
Haze_11967 Corylus avellana HOM05D000508 ORTHO05D000371 1.3e-11 74.3 101 40.6
DCAR_014653 Daucus carota HOM05D003879 ORTHO05D003858 1.3e-11 74.3 97 40.2
THA.LOC104805175 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 1.3e-11 74.3 149 36.2
Carub.0001s1375 Capsella rubella HOM05D003879 ORTHO05D003858 1.6e-11 73.9 74 44.6
CDE04G3169 Ceratophyllum demersum HOM05D000406 ORTHO05D007930 2.1e-11 73.6 90 40.0
Ciclev10033434m.g Citrus clementina HOM05D003879 ORTHO05D003858 2.1e-11 73.6 154 33.1
ECA234G2637 Erigeron canadensis HOM05D003879 ORTHO05D003858 2.1e-11 73.6 103 41.7
CARHR014450 Cardamine hirsuta HOM05D003879 ORTHO05D003858 2.8e-11 73.2 76 47.4
Hma1.2p1_1079F.1_g254860 Hydrangea macrophylla HOM05D003879 ORTHO05D003858 2.8e-11 73.2 121 37.2
PGR119G2196 Punica granatum HOM05D003879 ORTHO05D003858 3.7e-11 72.8 107 39.3
Sp1g12410 Schrenkiella parvula HOM05D003879 ORTHO05D003858 3.7e-11 72.8 85 44.7
Nn5g27527 Nelumbo nucifera HOM05D003879 ORTHO05D003858 4.8e-11 72.4 97 42.3
TAR622G1013 Trochodendron aralioides HOM05D003879 ORTHO05D003858 6.3e-11 72.0 98 40.8
CAN.G964.6 Capsicum annuum HOM05D003879 ORTHO05D003858 8.2e-11 71.6 92 41.3
ATR0559G110 Amborella trichopoda HOM05D003879 ORTHO05D003858 1.1e-10 71.2 84 40.5
MELO3C012121.2 Cucumis melo HOM05D003879 ORTHO05D003858 1.1e-10 71.2 74 45.9
HPP92_007611 Vanilla planifolia HOM05D003879 ORTHO05D003858 1.1e-10 71.2 80 43.8
FAN10G1503 Fragaria x ananassa HOM05D003879 ORTHO05D003858 1.4e-10 70.9 106 35.8
Lsat_1_v5_gn_4_10781 Lactuca sativa HOM05D003879 ORTHO05D003858 1.4e-10 70.9 152 32.9
Lj4g0017661 Lotus japonicus HOM05D003879 ORTHO05D003858 1.4e-10 70.9 78 43.6
Atru.chr11.1737 Acer truncatum HOM05D003879 ORTHO05D003858 1.8e-10 70.5 79 41.8
Actinidia31968 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.8e-10 70.5 80 42.5
Cpa.g.sc171.23 Carica papaya HOM05D003879 ORTHO05D003858 1.8e-10 70.5 86 41.9
Dinv34127 Davidia involucrata HOM05D003879 ORTHO05D003858 1.8e-10 70.5 112 39.3
Thhalv10014953m.g Eutrema salsugineum HOM05D015339 ORTHO05D003858 1.8e-10 70.5 112 39.3
Gohir.D11G305800 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.8e-10 70.5 92 39.1
MD06G1002200 Malus domestica HOM05D003879 ORTHO05D003858 1.8e-10 70.5 126 35.7
Sc04g0007930 Simmondsia chinensis HOM05D003879 ORTHO05D003858 1.8e-10 70.5 86 40.7
Thecc.02G340900 Theobroma cacao HOM05D003879 ORTHO05D003858 1.8e-10 70.5 86 43.0
arahy.Tifrunner.gnm1.ann1.8KK2IT Arachis hypogaea HOM05D003879 ORTHO05D003858 2.4e-10 70.1 99 41.4
arahy.Tifrunner.gnm1.ann1.WFL4FE Arachis hypogaea HOM05D003879 ORTHO05D003858 2.4e-10 70.1 92 40.2
Aa31LG1G980 Aethionema arabicum HOM05D003879 ORTHO05D003858 3.1e-10 69.7 130 36.2
MSTRG.2335 Avicennia marina HOM05D003879 ORTHO05D003858 3.1e-10 69.7 105 38.1
CiPaw.06G087900 Carya illinoinensis HOM05D003879 ORTHO05D003858 3.1e-10 69.7 87 43.7
Ca_08721_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 3.1e-10 69.7 88 38.6
THA.LOC104824074 Tarenaya hassleriana HOM05D003879 ORTHO05D003858 3.1e-10 69.7 157 32.5
VMungo0251G2410 Vigna mungo HOM05D003879 ORTHO05D003858 3.1e-10 69.7 122 36.1
Nn3g17308 Nelumbo nucifera HOM05D003879 ORTHO05D003858 4.1e-10 69.3 80 41.2
Prupe.1G004000 Prunus persica HOM05D003879 ORTHO05D003858 4.1e-10 69.3 77 42.9
CsaV3_5G033000 Cucumis sativus L. HOM05D003879 ORTHO05D003858 5.3e-10 68.9 146 35.6
Gohir.D11G305600 Gossypium hirsutum HOM05D003879 ORTHO05D003858 5.3e-10 68.9 111 35.1
Lsat_1_v5_gn_8_48881 Lactuca sativa HOM05D003879 ORTHO05D003858 5.3e-10 68.9 91 38.5
QL03p069280 Quercus lobata HOM05D003879 ORTHO05D003858 5.3e-10 68.9 115 36.5
Ah.02g129450 Amaranthus hybridus HOM05D003879 ORTHO05D003858 6.9e-10 68.6 74 44.6
A08p32120 Brassica napus HOM05D003879 ORTHO05D003858 6.9e-10 68.6 149 31.5
BolC8t49272H Brassica oleracea HOM05D003879 ORTHO05D003858 6.9e-10 68.6 74 43.2
BraA08t35135Z Brassica rapa HOM05D003879 ORTHO05D003858 6.9e-10 68.6 149 31.5
ClCG05G024040 Citrullus lanatus HOM05D003879 ORTHO05D003858 6.9e-10 68.6 146 37.0
Thhalv10009583m.g Eutrema salsugineum HOM05D015339 ORTHO05D003858 6.9e-10 68.6 70 52.9
Medtr4g082300 Medicago truncatula HOM05D003879 ORTHO05D003858 6.9e-10 68.6 168 29.8
Nitab4.5_0000391g0360 Nicotiana tabacum HOM05D003879 ORTHO05D003858 6.9e-10 68.6 88 42.0
MSTRG.7783 Avicennia marina HOM05D003879 ORTHO05D003858 9.0e-10 68.2 128 36.7
Nitab4.5_0004690g0010 Nicotiana tabacum HOM05D003879 ORTHO05D003858 9.0e-10 68.2 99 37.4
Prupe.5G003300 Prunus persica HOM05D003879 ORTHO05D003858 9.0e-10 68.2 111 35.1
Actinidia17746 Actinidia chinensis HOM05D003879 ORTHO05D003858 1.2e-09 67.8 81 42.0
arahy.Tifrunner.gnm1.ann1.1F58IB Arachis hypogaea HOM05D003879 ORTHO05D003858 1.2e-09 67.8 82 42.7
Eucgr.B03201 Eucalyptus grandis HOM05D003879 ORTHO05D003858 1.2e-09 67.8 95 38.9
Glyma.20G032800 Glycine max HOM05D003879 ORTHO05D003858 1.2e-09 67.8 85 40.0
MD04G1004200 Malus domestica HOM05D003879 ORTHO05D003858 1.2e-09 67.8 74 44.6
BcaB03g13115 Brassica carinata HOM05D003879 ORTHO05D003858 1.5e-09 67.4 92 38.0
Thhalv10008923m.g Eutrema salsugineum HOM05D003879 ORTHO05D003858 1.5e-09 67.4 158 32.9
PSO063G6167 Papaver somniferum HOM05D003879 ORTHO05D003858 1.5e-09 67.4 154 33.1
ECA233G3198 Erigeron canadensis HOM05D003879 ORTHO05D003858 2.0e-09 67.0 80 40.0
Psat7g156280 Pisum sativum HOM05D003879 ORTHO05D003858 2.0e-09 67.0 80 38.8
SGA_v2.0_scaffold36G14411 Striga asiatica HOM05D003879 ORTHO05D003858 2.0e-09 67.0 103 34.0
TWI73G0721 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 2.6e-09 66.6 111 39.6
EL10Ac6g13251 Beta vulgaris HOM05D003879 ORTHO05D003858 3.4e-09 66.2 63 49.2
Duzib251G0512 Durio zibethinus HOM05D003879 ORTHO05D003858 3.4e-09 66.2 86 40.7
FAN06G4142 Fragaria x ananassa HOM05D003879 ORTHO05D003858 3.4e-09 66.2 104 36.5
Nitab4.5_0013306g0020 Nicotiana tabacum HOM05D003879 ORTHO05D003858 3.4e-09 66.2 111 37.8
Phvul.005G037600 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 3.4e-09 66.2 74 41.9
RcHm_v2.0_Chr1g0342011 Rosa chinensis HOM05D003879 ORTHO05D003858 3.4e-09 66.2 74 40.5
PGSC0003DMG400028395 Solanum tuberosum HOM05D003879 ORTHO05D003858 3.4e-09 66.2 69 44.9
Sopen05g007910 Solanum pennellii HOM05D003879 ORTHO05D003858 4.5e-09 65.9 70 41.4
Duzib268G0934 Durio zibethinus HOM05D003879 ORTHO05D003858 5.9e-09 65.5 74 41.9
FvH4_7g07760 Fragaria vesca HOM05D003879 ORTHO05D003858 5.9e-09 65.5 87 39.1
Manes.08G154000 Manihot esculenta HOM05D003879 ORTHO05D003858 5.9e-09 65.5 126 33.3
PGSC0003DMG400002853 Solanum tuberosum HOM05D003879 ORTHO05D003858 5.9e-09 65.5 73 39.7
FAN01G2110 Fragaria x ananassa HOM05D003879 ORTHO05D003858 7.6e-09 65.1 143 30.8
Gorai.007G326500 Gossypium raimondii HOM05D003879 ORTHO05D003858 7.6e-09 65.1 80 40.0
Solyc05g013170.2 Solanum lycopersicum HOM05D003879 ORTHO05D003858 7.6e-09 65.1 73 41.1
Thecc.07G109400 Theobroma cacao HOM05D003879 ORTHO05D003858 7.6e-09 65.1 81 40.7
Gohir.A11G287541 Gossypium hirsutum HOM05D003879 ORTHO05D003858 1.0e-08 64.7 92 39.1
Rhsim12G0132500 Rhododendron simsii HOM05D003879 ORTHO05D003858 1.0e-08 64.7 85 37.6
TPR.G34072 Trifolium pratense HOM05D003879 ORTHO05D003858 1.3e-08 64.3 157 31.2
Solyc04g005580.1 Solanum lycopersicum HOM05D003879 ORTHO05D003858 1.7e-08 63.9 73 39.7
TWI60G0224 Tripterygium wilfordii HOM05D003879 ORTHO05D003858 1.7e-08 63.9 80 38.8
BraA09t41615Z Brassica rapa HOM05D003879 ORTHO05D003858 2.2e-08 63.5 119 33.6
Ah.03g134780 Amaranthus hybridus HOM05D003879 ORTHO05D003858 2.9e-08 63.2 75 40.0
Lj3P1034T75 Lonicera japonica HOM05D003879 ORTHO05D003858 2.9e-08 63.2 67 46.3
Manes.01G033400 Manihot esculenta HOM05D003879 ORTHO05D003858 2.9e-08 63.2 88 39.8
Phvul.002G169800 Phaseolus vulgaris HOM05D003879 ORTHO05D003858 2.9e-08 63.2 94 38.3
SHI14928 Sapria himalayana HOM05D003879 ORTHO05D003858 2.9e-08 63.2 83 39.8
Sabra13G0083700 Salix brachista HOM05D003879 ORTHO05D003858 3.8e-08 62.8 90 40.0
Sabra13G0085000 Salix brachista HOM05D003879 ORTHO05D003858 3.8e-08 62.8 90 40.0
Sopen04g001620 Solanum pennellii HOM05D003879 ORTHO05D003858 3.8e-08 62.8 73 38.4
Lalb_Chr16g0385721 Lupinus albus HOM05D003879 ORTHO05D003858 5.0e-08 62.4 95 37.9
Os03g0647400 Oryza sativa ssp. japonica HOM05D003879 ORTHO05D003858 5.0e-08 62.4 111 37.8
unitig_21.g20857 Utricularia gibba HOM05D003879 ORTHO05D003858 5.0e-08 62.4 148 27.7
Aqoxy4G02841 Aquilegia oxysepala HOM05D003879 ORTHO05D003858 6.5e-08 62.0 135 33.3
COL.COLO4_17583 Corchorus olitorius HOM05D003879 ORTHO05D003858 6.5e-08 62.0 73 38.4
COL.COLO4_27987 Corchorus olitorius HOM05D003879 ORTHO05D003858 6.5e-08 62.0 125 34.4
Mapoly0084s0083 Marchantia polymorpha HOM05D003879 ORTHO05D003858 6.5e-08 62.0 106 34.9
Potri.013G099100 Populus trichocarpa HOM05D003879 ORTHO05D003858 6.5e-08 62.0 88 40.9
AL5G12880 Arabidopsis lyrata HOM05D020304 ORTHO05D021442 1.1e-07 61.2 102 37.3
Cfa008939 Carpinus fangiana HOM05D003879 ORTHO05D003858 1.1e-07 61.2 126 33.3
AT2G03230 Arabidopsis thaliana HOM05D020304 ORTHO05D021442 1.9e-07 60.5 143 32.2
CSS0010298 Camellia sinensis var. sinensis HOM05D003879 ORTHO05D003858 1.9e-07 60.5 160 30.0
SGA_v2.0_scaffold455G51901 Striga asiatica HOM05D003879 ORTHO05D003858 1.9e-07 60.5 174 28.2
Ca_08720_v3 Cicer arietinum L. HOM05D003879 ORTHO05D003858 2.5e-07 60.1 73 39.7
Dinv16679 Davidia involucrata HOM05D003879 ORTHO05D003858 2.5e-07 60.1 149 30.2
Zm00001eb218620 Zea mays HOM05D003879 ORTHO05D003858 2.5e-07 60.1 98 37.8
arahy.Tifrunner.gnm1.ann1.BSX7E4 Arachis hypogaea HOM05D003879 ORTHO05D003858 4.2e-07 59.3 80 38.8
BraA09t40680Z Brassica rapa HOM05D003879 ORTHO05D003858 4.2e-07 59.3 129 31.8
Migut.L01257 Erythranthe guttata HOM05D003879 ORTHO05D003858 4.2e-07 59.3 142 31.7
BcaC04g19943 Brassica carinata HOM05D015339 ORTHO05D003858 5.5e-07 58.9 109 36.7
Sed0022737 Sechium edule HOM05D003879 ORTHO05D003858 5.5e-07 58.9 144 31.2
BcaC07g41607 Brassica carinata HOM05D003879 ORTHO05D003858 7.2e-07 58.5 83 39.8
BolC8t52157H Brassica oleracea HOM05D003879 ORTHO05D003858 7.2e-07 58.5 83 39.8
Zm00001eb300270 Zea mays HOM05D003879 ORTHO05D003858 7.2e-07 58.5 69 37.7
BcaC07g40413 Brassica carinata HOM05D000331 ORTHO05D003858 9.3e-07 58.2 130 32.3
Thhalv10005267m.g Eutrema salsugineum HOM05D020304 ORTHO05D021442 9.3e-07 58.2 91 35.2
RhsimUnG0183500 Rhododendron simsii HOM05D003879 ORTHO05D003858 9.3e-07 58.2 98 38.8
TAR374G1047 Trochodendron aralioides HOM05D003879 ORTHO05D003858 9.3e-07 58.2 154 33.8
C08p46070 Brassica napus HOM05D003879 ORTHO05D003858 1.2e-06 57.8 76 38.2
Lj6C784G16 Lonicera japonica HOM05D000508 ORTHO05D006805 1.2e-06 57.8 57 45.6
CARHR145560 Cardamine hirsuta HOM05D020304 ORTHO05D021442 2.7e-06 56.6 88 37.5
Zm00001eb050330 Zea mays HOM05D003879 ORTHO05D003858 2.7e-06 56.6 80 37.5
Pp3c16_17450 Physcomitrium patens HOM05D003879 ORTHO05D003858 3.6e-06 56.2 129 32.6
Potri.019G081400 Populus trichocarpa HOM05D003879 ORTHO05D003858 4.6e-06 55.8 70 40.0
Cc11_g12680 Coffea canephora HOM05D003879 ORTHO05D003858 6.1e-06 55.5 135 29.6


User provided reference genes

Program Settings