Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 3.5e-65 251.5 131 100.0
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 2.1e-54 215.7 132 88.6
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 3.6e-54 214.9 132 88.6
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 2.3e-53 212.2 131 85.5
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 2.3e-53 212.2 132 87.9
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.3e-51 206.5 131 84.0
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.3e-51 206.5 131 84.0
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.4e-50 203.0 133 83.5
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 2.1e-49 199.1 132 84.8
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.0e-48 196.8 132 84.1
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 2.3e-48 195.7 130 84.6
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 3.0e-48 195.3 132 83.3
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 3.0e-48 195.3 132 83.3
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 6.2e-46 187.6 131 81.7
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.5e-39 165.6 138 70.3
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 2.1e-38 162.5 133 72.2
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.9e-32 141.7 123 68.3
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 8.1e-30 134.0 92 81.5
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 8.1e-30 134.0 92 81.5
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 3.9e-24 115.2 126 54.8
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 2.5e-23 112.5 124 55.6
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 3.3e-23 112.1 134 57.5
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.6e-22 109.8 125 55.2
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 3.7e-22 108.6 124 54.8
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 4.8e-22 108.2 120 55.0
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 6.2e-22 107.8 124 54.8
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.1e-21 107.1 119 56.3
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.4e-21 106.7 120 54.2
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.8e-21 106.3 127 54.3
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.4e-21 105.9 134 50.0
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 6.9e-21 104.4 126 54.0
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 6.9e-21 104.4 127 53.5
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 9.0e-21 104.0 129 52.7
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 9.0e-21 104.0 123 52.8
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 2.6e-20 102.4 137 49.6
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 2.6e-20 102.4 131 53.4
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 5.8e-20 101.3 131 52.7
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 7.6e-20 100.9 127 54.3
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.0e-19 100.5 122 47.5
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.3e-19 100.1 123 50.4
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.3e-19 100.1 123 50.4
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.7e-19 99.8 123 52.0
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 4.9e-19 98.2 119 48.7
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.9e-19 98.2 123 52.0
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.9e-19 98.2 123 52.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 8.4e-19 97.4 129 50.4
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 8.4e-19 97.4 117 50.4
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.1e-18 97.1 124 49.2
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.1e-18 97.1 131 47.3
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.9e-18 96.3 111 47.7
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.5e-18 95.9 121 49.6
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 2.5e-18 95.9 118 52.5
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 4.2e-18 95.1 129 49.6
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-17 93.6 129 49.6
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.2e-17 93.6 114 50.0
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.6e-17 93.2 134 47.0
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.6e-17 93.2 113 46.9
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.6e-17 93.2 122 48.4
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 2.1e-17 92.8 118 50.8
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.7e-17 92.4 126 45.2
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 4.6e-17 91.7 128 47.7
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 6.0e-17 91.3 126 48.4
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.9e-17 90.9 127 46.5
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.0e-16 90.5 126 50.8
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.0e-16 90.5 126 51.6
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.8e-16 89.7 123 48.0
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.8e-16 89.7 123 44.7
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.3e-16 89.4 127 46.5
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 3.0e-16 89.0 125 48.0
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-16 88.6 127 45.7
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-16 88.6 127 45.7
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 3.9e-16 88.6 124 48.4
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 5.1e-16 88.2 122 46.7
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.9e-15 86.3 127 48.8
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 2.5e-15 85.9 115 50.4
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.3e-15 85.5 113 51.3
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.3e-15 85.5 113 51.3
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 5.7e-15 84.7 126 48.4
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 7.4e-15 84.3 125 46.4
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.3e-14 83.6 131 44.3
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 2.1e-14 82.8 129 45.0
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 4.8e-14 81.6 121 48.8
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 4.8e-14 81.6 114 46.5
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 6.3e-14 81.3 117 42.7
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 6.3e-14 81.3 114 44.7
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 6.3e-14 81.3 132 42.4
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 8.2e-14 80.9 114 43.9
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.1e-13 80.5 113 48.7
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.4e-13 80.1 137 40.1
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.4e-13 80.1 98 54.1
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.4e-13 80.1 97 47.4
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.4e-13 80.1 115 44.3
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.8e-13 79.7 121 42.1
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.8e-13 79.7 114 44.7
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 2.4e-13 79.3 135 42.2
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 4.1e-13 78.6 117 43.6
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 6.9e-13 77.8 114 43.9
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 6.9e-13 77.8 114 42.1
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 9.0e-13 77.4 123 42.3
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 9.0e-13 77.4 138 41.3
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-12 77.0 135 41.5
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 2.0e-12 76.3 121 43.0
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.4e-12 75.5 98 52.0
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.4e-12 75.5 118 45.8
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.4e-12 75.5 118 45.8
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 3.4e-12 75.5 119 46.2
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.0e-11 73.9 109 45.0
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.0e-11 73.9 123 41.5
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.3e-11 73.6 139 39.6
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 2.2e-11 72.8 111 41.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 2.2e-11 72.8 128 45.3
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 2.9e-11 72.4 121 38.0
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 2.9e-11 72.4 124 39.5
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 8.4e-11 70.9 120 44.2
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-10 70.5 119 43.7
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-10 70.5 119 43.7
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.1e-10 70.5 106 48.1
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.4e-10 70.1 155 36.1
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.4e-10 70.1 117 38.5
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.4e-10 70.1 114 40.4
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.9e-10 69.7 123 39.8
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-10 69.7 121 37.2
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.9e-10 69.7 119 40.3
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.5e-10 69.3 117 42.7
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.5e-10 69.3 123 39.0
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 2.5e-10 69.3 120 37.5
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 3.2e-10 68.9 140 38.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 5.5e-10 68.2 118 41.5
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.2e-10 67.8 121 37.2
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 7.2e-10 67.8 107 46.7
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.6e-09 66.6 119 37.8
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.6e-09 66.6 117 37.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.6e-09 66.6 118 42.4
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.1e-09 66.2 114 37.7
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.1e-09 64.7 115 35.7
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 6.1e-09 64.7 121 36.4
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.9e-08 62.0 122 38.5
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 5.1e-08 61.6 70 48.6
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 6.7e-08 61.2 110 40.9
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 8.7e-08 60.8 133 33.8
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.5e-07 60.1 129 35.7
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.9e-07 59.7 115 35.7
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 4.3e-07 58.5 102 43.1
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 7.4e-07 57.8 128 39.8
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 9.7e-07 57.4 166 31.3
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 9.7e-07 57.4 119 35.3
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.3e-06 57.0 160 31.2
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 1.6e-06 56.6 145 34.5
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 2.8e-06 55.8 131 38.2
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 3.7e-06 55.5 139 36.0
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 8.2e-06 54.3 136 33.1


User provided reference genes

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