Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 0.0e+00 1179.5 645 100.0
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 0.0e+00 1137.1 645 94.0
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 0.0e+00 1134.4 647 94.1
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 0.0e+00 1130.5 650 93.2
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1109.7 645 93.2
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1108.2 645 92.7
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 0.0e+00 1107.8 645 92.9
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1107.0 645 92.4
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1104.7 647 92.6
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1102.0 645 92.1
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 0.0e+00 1100.9 645 87.8
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1087.4 647 90.0
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1087.0 647 88.4
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 0.0e+00 1086.6 647 91.5
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1085.5 648 89.8
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 0.0e+00 1079.7 645 90.5
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.1e-310 1069.3 648 86.1
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 1.5e-310 1068.9 648 88.0
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 4.5e-307 1057.4 647 88.4
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 3.8e-298 1027.7 648 81.6
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 1.5e-297 1025.8 648 83.0
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 7.1e-260 900.6 659 72.4
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.2e-259 899.8 653 71.5
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 2.7e-259 898.7 655 71.3
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 6.6e-258 894.0 655 70.8
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 3.6e-256 888.3 662 70.5
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 8.1e-256 887.1 654 71.6
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 1.1e-255 886.7 632 75.5
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 3.1e-255 885.2 654 71.7
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 3.1e-255 885.2 658 71.0
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 5.8e-254 880.9 654 69.6
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 5.8e-254 880.9 654 69.6
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 3.2e-252 875.2 657 68.5
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 3.2e-252 875.2 661 70.8
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 4.1e-252 874.8 659 70.0
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 1.6e-251 872.8 657 70.0
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 2.1e-251 872.5 659 69.5
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 2.7e-251 872.1 657 68.9
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.3e-250 869.0 661 70.0
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 6.6e-250 867.5 659 69.5
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.5e-249 866.3 656 69.2
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 2.5e-249 865.5 655 69.2
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 2.5e-249 865.5 650 70.0
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 4.3e-249 864.8 657 69.9
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 5.6e-249 864.4 652 67.9
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 3.6e-248 861.7 653 69.1
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 6.2e-248 860.9 660 69.1
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.1e-247 860.1 653 69.4
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.4e-247 859.8 657 70.9
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 2.4e-247 859.0 653 69.2
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 3.1e-247 858.6 653 69.4
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 4.0e-247 858.2 654 69.1
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.5e-246 856.3 647 70.0
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 1.5e-246 856.3 664 69.7
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.5e-246 856.3 655 69.2
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 1.5e-246 856.3 634 70.5
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 7.6e-246 854.0 652 68.9
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 4.9e-245 851.3 653 69.7
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 6.6e-242 840.9 659 67.4
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 6.6e-242 840.9 655 67.3
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 4.3e-241 838.2 644 69.1
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 5.6e-241 837.8 661 66.4
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.6e-240 836.3 639 69.5
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 2.8e-240 835.5 658 67.0
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 3.6e-240 835.1 659 68.0
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 8.1e-240 833.9 647 68.9
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 2.4e-239 832.4 649 69.0
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 4.0e-239 831.6 646 68.9
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 2.0e-238 829.3 651 68.0
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 9.9e-238 827.0 657 67.3
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 1.9e-236 822.8 578 72.8
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 3.2e-236 822.0 656 66.5
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 5.4e-236 821.2 657 67.1
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 2.1e-235 819.3 648 66.8
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.3e-234 816.6 661 69.7
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.5e-233 813.1 659 65.9
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 3.3e-233 812.0 576 73.4
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 4.3e-233 811.6 657 67.1
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 7.4e-233 810.8 658 65.2
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 2.8e-232 808.9 655 66.3
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 6.2e-232 807.7 646 67.6
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 8.1e-232 807.4 657 66.8
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 1.4e-231 806.6 654 67.1
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 5.3e-231 804.7 659 65.3
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 2.0e-230 802.7 650 64.3
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 7.6e-230 800.8 656 64.3
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.7e-229 799.7 658 64.6
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 6.4e-229 797.7 656 64.0
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 1.9e-228 796.2 638 66.9
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 1.9e-228 796.2 656 63.9
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 3.2e-228 795.4 650 63.8
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 2.1e-227 792.7 656 64.2
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 2.7e-227 792.3 658 64.4
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 2.3e-226 789.3 662 67.1
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 2.3e-226 789.3 664 63.6
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 5.1e-226 788.1 656 63.4
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.9e-225 786.2 648 65.4
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 6.2e-224 781.2 659 63.6
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.4e-223 779.2 651 64.2
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.6e-222 775.8 647 64.3
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 3.4e-222 775.4 649 64.7
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.9e-220 769.6 660 62.3
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 2.6e-214 749.2 663 62.1
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 5.0e-213 745.0 653 60.9
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 4.6e-211 738.4 654 61.0
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 3.7e-208 728.8 646 63.2
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 5.3e-207 724.9 657 60.9
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.0e-206 723.0 657 60.7
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 6.3e-200 701.4 625 68.6
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 2.2e-197 693.0 656 57.5
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 3.2e-196 689.1 649 58.1
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 3.9e-194 682.2 656 58.1
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 5.9e-190 668.3 660 55.9
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.8e-186 656.8 637 58.2
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 4.8e-184 648.7 655 57.3
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 5.0e-181 638.6 552 63.0
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 8.5e-181 637.9 657 54.2
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.3e-178 629.8 648 57.3
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.4e-177 625.5 646 55.9
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 4.0e-162 575.9 660 50.9
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.0e-151 538.5 556 55.6
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 2.6e-145 520.0 681 45.8
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.4e-138 497.7 680 43.5
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 3.3e-124 449.9 685 41.9
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 3.0e-117 426.8 349 64.8
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 8.7e-101 372.1 338 62.4
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 8.8e-93 345.5 243 69.1
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 2.5e-87 327.4 386 47.9
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 3.2e-63 247.3 295 50.8
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 2.3e-45 188.0 563 28.4
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.9e-39 168.3 113 75.2
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.7e-35 154.1 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 4.9e-27 127.1 113 66.4
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 2.1e-14 85.1 94 52.1
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 2.7e-09 68.2 100 38.0
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 3.0e-08 64.7 44 65.9
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 8.1e-06 56.6 51 54.9


User provided reference genes

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