Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1796 Capsella rubella HOM05D001363 ORTHO05D006255 1.7e-111 406.0 205 100.0
CARHR271240 Cardamine hirsuta HOM05D001363 ORTHO05D006255 7.4e-78 294.3 163 89.0
Sp6g19160 Schrenkiella parvula HOM05D001363 ORTHO05D006255 3.8e-74 282.0 159 88.7
AT5G57450 Arabidopsis thaliana HOM05D001363 ORTHO05D006255 4.2e-73 278.5 162 87.0
C03p14990 Brassica napus HOM05D001363 ORTHO05D006255 1.5e-70 270.0 165 81.8
Thhalv10015458m.g Eutrema salsugineum HOM05D001363 ORTHO05D006255 1.5e-70 270.0 178 80.9
A03p12830 Brassica napus HOM05D001363 ORTHO05D006255 9.6e-70 267.3 162 84.6
BraA03t10591Z Brassica rapa HOM05D001363 ORTHO05D006255 9.6e-70 267.3 162 84.6
BolC3t13941H Brassica oleracea HOM05D001363 ORTHO05D006255 1.6e-69 266.5 161 84.5
Aa31LG3G13330 Aethionema arabicum HOM05D001363 ORTHO05D006255 3.1e-68 262.3 176 77.3
BcaC01g06488 Brassica carinata HOM05D001363 ORTHO05D006255 5.8e-67 258.1 166 80.1
BcaB01g04460 Brassica carinata HOM05D001363 ORTHO05D006255 3.8e-66 255.4 156 84.6
Rhsim03G0264200 Rhododendron simsii HOM05D001363 ORTHO05D006255 8.2e-53 211.1 160 61.2
MELO3C004027.2 Cucumis melo HOM05D001363 ORTHO05D006255 1.1e-52 210.7 171 60.8
CsaV3_2G008370 Cucumis sativus L. HOM05D001363 ORTHO05D006255 4.1e-52 208.8 170 60.0
ClCG11G012170 Citrullus lanatus HOM05D001363 ORTHO05D006255 6.9e-52 208.0 177 57.1
Cpa.g.sc95.51 Carica papaya HOM05D001363 ORTHO05D006255 2.0e-51 206.5 160 63.1
CSS0019343 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D006255 1.0e-50 204.1 158 60.8
CSS0044369 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D006255 1.0e-50 204.1 158 60.8
QL02p097661 Quercus lobata HOM05D001363 ORTHO05D006255 1.0e-50 204.1 163 60.1
vmacro06016 Vaccinium macrocarpon HOM05D001363 ORTHO05D006255 2.2e-50 203.0 160 58.8
PGR142G0790 Punica granatum HOM05D001363 ORTHO05D006255 3.8e-50 202.2 161 62.1
Atru.chr7.643 Acer truncatum HOM05D001363 ORTHO05D006255 5.0e-50 201.8 160 60.6
CiPaw.08G036500 Carya illinoinensis HOM05D001363 ORTHO05D006255 5.0e-50 201.8 160 62.5
EL10Ac4g08144 Beta vulgaris HOM05D001363 ORTHO05D006255 8.5e-50 201.1 165 58.2
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 1.1e-49 200.7 165 57.0
Lj9P685T22 Lonicera japonica HOM05D001363 ORTHO05D006255 1.9e-49 199.9 159 60.4
BcaC01g06495 Brassica carinata HOM05D001363 ORTHO05D006255 2.5e-49 199.5 115 87.8
MD06G1167000 Malus domestica HOM05D001363 ORTHO05D006255 4.2e-49 198.7 160 58.8
MD14G1172600 Malus domestica HOM05D001363 ORTHO05D006255 4.2e-49 198.7 161 59.0
Actinidia38636 Actinidia chinensis HOM05D001363 ORTHO05D006255 7.2e-49 198.0 148 64.2
GSVIVG01029206001 Vitis vinifera HOM05D001363 ORTHO05D006255 7.2e-49 198.0 169 56.2
TWI34G1409 Tripterygium wilfordii HOM05D001363 ORTHO05D006255 1.2e-48 197.2 168 56.5
Cfa013508 Carpinus fangiana HOM05D001363 ORTHO05D006255 3.6e-48 195.7 158 62.0
Gohir.A05G004600 Gossypium hirsutum HOM05D001363 ORTHO05D006255 4.6e-48 195.3 158 60.1
TAR625G1447 Trochodendron aralioides HOM05D001363 ORTHO05D006255 4.6e-48 195.3 157 60.5
CANSAT11G0841 Cannabis sativa HOM05D001363 ORTHO05D006255 6.1e-48 194.9 159 61.0
Gorai.009G005300 Gossypium raimondii HOM05D001363 ORTHO05D006255 6.1e-48 194.9 158 60.1
Sc08g0005330 Simmondsia chinensis HOM05D001363 ORTHO05D006255 1.0e-47 194.1 161 57.1
AUR62034263 Chenopodium quinoa HOM05D001363 ORTHO05D006255 1.4e-47 193.7 158 58.2
Haze_22100 Corylus avellana HOM05D001363 ORTHO05D006255 1.4e-47 193.7 158 61.4
Eucgr.C00157 Eucalyptus grandis HOM05D001363 ORTHO05D006255 1.4e-47 193.7 159 58.5
Nn2g12720 Nelumbo nucifera HOM05D001363 ORTHO05D006255 1.4e-47 193.7 164 58.5
FvH4_4g08251 Fragaria vesca HOM05D001363 ORTHO05D006255 1.8e-47 193.4 156 58.3
RcHm_v2.0_Chr4g0402491 Rosa chinensis HOM05D001363 ORTHO05D006255 3.9e-47 192.2 162 56.2
Sed0007175 Sechium edule HOM05D001363 ORTHO05D006255 6.7e-47 191.4 168 56.5
Manes.01G004820 Manihot esculenta HOM05D001363 ORTHO05D006255 8.8e-47 191.0 158 60.8
Thecc.09G173000 Theobroma cacao HOM05D001363 ORTHO05D006255 8.8e-47 191.0 160 57.5
Gohir.D05G005500 Gossypium hirsutum HOM05D001363 ORTHO05D006255 1.1e-46 190.7 154 60.4
Ciclev10008928m.g Citrus clementina HOM05D001363 ORTHO05D006255 2.0e-46 189.9 165 58.2
Dinv41718 Davidia involucrata HOM05D001694 ORTHO05D000248 7.4e-46 188.0 150 60.0
arahy.Tifrunner.gnm1.ann1.YA5C6P Arachis hypogaea HOM05D001363 ORTHO05D006255 9.7e-46 187.6 158 62.0
arahy.Tifrunner.gnm1.ann1.2PT66T Arachis hypogaea HOM05D001363 ORTHO05D006255 1.7e-45 186.8 156 62.8
MBI14_g17365_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D006255 1.8e-44 183.3 158 60.1
ECA236G4924 Erigeron canadensis HOM05D001363 ORTHO05D006255 2.4e-44 183.0 161 55.3
HanXRQChr05g0143031 Helianthus annuus HOM05D001363 ORTHO05D006255 3.1e-44 182.6 159 55.3
Lsat_1_v5_gn_8_66820 Lactuca sativa HOM05D001363 ORTHO05D006255 3.1e-44 182.6 159 56.0
Cc06_g13270 Coffea canephora HOM05D001363 ORTHO05D006255 9.1e-44 181.0 158 56.3
Potri.018G093100 Populus trichocarpa HOM05D001363 ORTHO05D006255 9.1e-44 181.0 159 56.6
Aqoxy2G00910 Aquilegia oxysepala HOM05D001363 ORTHO05D006255 1.5e-43 180.3 160 55.6
THA.LOC104813524 Tarenaya hassleriana HOM05D001363 ORTHO05D006255 1.7e-42 176.8 127 69.3
DCAR_014703 Daucus carota HOM05D001363 ORTHO05D006255 2.9e-42 176.0 157 53.5
FAN07G0609 Fragaria x ananassa HOM05D001363 ORTHO05D006255 6.5e-42 174.9 146 56.8
Ca_12655_v3 Cicer arietinum L. HOM05D001363 ORTHO05D006255 8.5e-42 174.5 164 54.9
Oeu056514.1 Olea europaea HOM05D001363 ORTHO05D006255 1.1e-41 174.1 159 56.0
Lj6g0018832 Lotus japonicus HOM05D001363 ORTHO05D006255 2.1e-40 169.9 162 54.3
ATR0580G043 Amborella trichopoda HOM05D001363 ORTHO05D006255 2.7e-40 169.5 169 52.7
Migut.J01476 Erythranthe guttata HOM05D001363 ORTHO05D006255 3.0e-39 166.0 172 51.7
Psat1g024320 Pisum sativum HOM05D001363 ORTHO05D006255 5.2e-39 165.2 163 53.4
MSTRG.19704 Avicennia marina HOM05D001363 ORTHO05D006255 8.8e-39 164.5 171 53.2
Hund26352 Selenicereus undatus HOM05D001363 ORTHO05D006255 8.8e-39 164.5 130 60.8
Medtr2g445230 Medicago truncatula HOM05D001363 ORTHO05D006255 2.0e-38 163.3 158 55.7
CAN.G1081.7 Capsicum annuum HOM05D001363 ORTHO05D006255 4.8e-37 158.7 158 50.0
PGSC0003DMG400020439 Solanum tuberosum HOM05D001363 ORTHO05D006255 4.8e-37 158.7 158 50.0
SGA_v2.0_scaffold66G22453 Striga asiatica HOM05D001363 ORTHO05D006255 8.2e-37 157.9 156 52.6
TPR.G9532 Trifolium pratense HOM05D001363 ORTHO05D006255 8.2e-37 157.9 163 50.3
Phvul.008G013800 Phaseolus vulgaris HOM05D001363 ORTHO05D006255 1.1e-36 157.5 164 49.4
VMungo1383G3248 Vigna mungo HOM05D001363 ORTHO05D006255 1.1e-36 157.5 164 50.6
Glyma.18G288200 Glycine max HOM05D001363 ORTHO05D006255 3.1e-36 156.0 158 53.2
SHI41748 Sapria himalayana HOM05D001363 ORTHO05D006255 4.1e-36 155.6 137 56.9
SEGI_22217 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 5.3e-36 155.2 175 43.4
Solyc07g055170.1 Solanum lycopersicum HOM05D001363 ORTHO05D006255 9.1e-36 154.5 157 49.0
CBR_g28512 Chara braunii HOM05D001363 ORTHO05D006255 1.6e-35 153.7 173 48.0
Sabra18G0080300 Salix brachista HOM05D001363 ORTHO05D006255 2.5e-33 146.4 108 62.0
unitig_0.g574 Utricularia gibba HOM05D001363 ORTHO05D006255 3.2e-33 146.0 157 46.5
Zm00001eb243950 Zea mays HOM05D001363 ORTHO05D006255 4.2e-33 145.6 164 48.2
PSO339G0974 Papaver somniferum HOM05D000001 ORTHO05D006255 9.4e-33 144.4 140 55.0
Oeu002544.1 Olea europaea HOM05D001363 ORTHO05D006255 3.6e-32 142.5 138 53.6
Mapoly0009s0225 Marchantia polymorpha HOM05D001363 ORTHO05D006255 1.0e-31 141.0 162 46.9
Os02g0562100 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D006255 1.0e-31 141.0 158 46.2
SalBow6G0285 Salvia bowleyana HOM05D001363 ORTHO05D006255 1.0e-31 141.0 139 54.7
HPP92_010750 Vanilla planifolia HOM05D001363 ORTHO05D006255 2.3e-31 139.8 158 47.5
PSO801G0379 Papaver somniferum HOM05D001363 ORTHO05D006255 3.0e-31 139.4 136 55.9
SalBow7G1126 Salvia bowleyana HOM05D001363 ORTHO05D006255 3.0e-31 139.4 159 47.2
BcaC01g06492 Brassica carinata HOM05D001363 ORTHO05D006255 2.0e-30 136.7 138 61.6
Lalb_Chr11g0072311 Lupinus albus HOM05D001363 ORTHO05D006255 4.4e-30 135.6 131 55.0
Peaxi162Scf00276g00065 Petunia axillaris HOM05D001363 ORTHO05D006255 5.7e-30 135.2 108 61.1
Sopen07g027050 Solanum pennellii HOM05D000134 ORTHO05D003318 9.7e-30 134.4 140 49.3
Peaxi162Scf00113g00112 Petunia axillaris HOM05D001363 ORTHO05D006255 2.8e-29 132.9 108 60.2
SalBow1G6812 Salvia bowleyana HOM05D001363 ORTHO05D006255 4.5e-27 125.6 158 46.8
SalBow3G2957 Salvia bowleyana HOM05D001363 ORTHO05D006255 4.2e-25 119.0 157 40.8
EL10Ac8g19301 Beta vulgaris HOM05D001363 ORTHO05D006255 4.7e-24 115.5 176 38.1
Prupe.1G061700 Prunus persica HOM05D001363 ORTHO05D006255 4.7e-24 115.5 107 54.2
SalBow3G2802 Salvia bowleyana HOM05D001363 ORTHO05D006255 1.4e-23 114.0 156 39.1
SalBow3G3288 Salvia bowleyana HOM05D001363 ORTHO05D006255 1.4e-23 114.0 157 40.1
PRCOL_00002213 Prasinoderma coloniale HOM05D001363 ORTHO05D006255 1.2e-22 110.9 170 38.2
EL10Ac2g02973 Beta vulgaris HOM05D008320 ORTHO05D012961 4.8e-21 105.5 126 44.4
EL10Ac4g08159 Beta vulgaris HOM05D001363 ORTHO05D006255 1.8e-20 103.6 156 39.1
EL10Ac1g01763 Beta vulgaris HOM05D001363 ORTHO05D006255 4.5e-19 99.0 176 34.7
Cre06.g278151 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D006255 1.0e-18 97.8 178 35.4
EL10Ac4g09496 Beta vulgaris HOM05D001363 ORTHO05D006255 2.3e-18 96.7 175 32.0
MCO13G404 Micromonas commoda HOM05D001363 ORTHO05D006255 1.5e-17 94.0 191 34.6
EL10As3g23308 Beta vulgaris HOM05D001363 ORTHO05D006255 1.9e-17 93.6 177 31.6
EL10Ac1g01702 Beta vulgaris HOM05D001363 ORTHO05D006255 1.2e-16 90.9 175 30.9
EL10Ac9g22685 Beta vulgaris HOM05D014025 ORTHO05D006255 6.1e-16 88.6 159 34.6
EL10Ac7g15946 Beta vulgaris HOM05D014025 ORTHO05D006255 8.0e-16 88.2 159 35.8
EL10Ac7g18135 Beta vulgaris HOM05D014025 ORTHO05D006255 5.7e-14 82.0 159 32.7
EL10Ac3g06723 Beta vulgaris HOM05D001363 ORTHO05D006255 1.3e-13 80.9 175 29.1
SMO270G0051 Selaginella moellendorffii HOM05D027465 ORTHO05D006255 3.7e-13 79.3 107 38.3
EL10Ac4g08201 Beta vulgaris HOM05D001363 ORTHO05D006255 7.0e-12 75.1 154 29.9
EL10Ac3g06329 Beta vulgaris HOM05D001363 ORTHO05D006255 1.6e-11 73.9 99 41.4
EL10Ac4g08765 Beta vulgaris HOM05D014025 ORTHO05D006255 1.6e-11 73.9 154 29.2
EL10Ac1g01411 Beta vulgaris HOM05D001363 ORTHO05D006255 2.0e-11 73.6 124 33.1
EL10Ac9g22649 Beta vulgaris HOM05D001363 ORTHO05D006255 2.7e-11 73.2 154 29.2
EL10Ac3g06993 Beta vulgaris HOM05D014025 ORTHO05D006255 4.3e-09 65.9 126 32.5
EL10Ac5g12481 Beta vulgaris HOM05D014025 ORTHO05D006255 4.3e-09 65.9 90 41.1
COL.COLO4_30985 Corchorus olitorius HOM05D001363 ORTHO05D006255 1.6e-08 63.9 55 56.4
MCO10G289 Micromonas commoda HOM05D007288 ORTHO05D009200 3.6e-08 62.8 177 28.2
AagrBONN_evm.TU.Sc2ySwM_362.1271 Anthoceros agrestis HOM05D001363 ORTHO05D002212 4.7e-08 62.4 157 30.6
AUR62036755 Chenopodium quinoa HOM05D009432 ORTHO05D011319 1.8e-07 60.5 105 31.4
Pp3c5_12400 Physcomitrium patens HOM05D001546 ORTHO05D008648 3.0e-07 59.7 157 28.0
RcHm_v2.0_Chr4g0402521 Rosa chinensis HOM05D001363 ORTHO05D006255 3.0e-07 59.7 42 64.3
PRCOL_00003537 Prasinoderma coloniale HOM05D001546 ORTHO05D008648 8.9e-07 58.2 158 27.8
SEGI_22011 Sequoiadendron giganteum HOM05D001546 ORTHO05D008648 1.2e-06 57.8 156 29.5
PRCOL_00001374 Prasinoderma coloniale HOM05D001363 ORTHO05D002212 1.5e-06 57.4 159 29.6
Zm00001eb138190 Zea mays HOM05D001363 ORTHO05D002212 1.5e-06 57.4 157 28.0
Aqoxy7G00934 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 2.0e-06 57.0 159 28.3
FvH4_1g09550 Fragaria vesca HOM05D001363 ORTHO05D002212 2.6e-06 56.6 157 28.0
Lalb_Chr13g0299171 Lupinus albus HOM05D001363 ORTHO05D002212 2.6e-06 56.6 185 25.9
unitig_0.g1301 Utricularia gibba HOM05D001546 ORTHO05D008648 2.6e-06 56.6 158 27.8
Oeu004804.1 Olea europaea HOM05D001363 ORTHO05D002212 3.4e-06 56.2 157 29.9
CBR_g49283 Chara braunii HOM05D001363 ORTHO05D002212 4.4e-06 55.8 157 26.8
DCAR_011907 Daucus carota HOM05D001363 ORTHO05D002212 4.4e-06 55.8 157 28.7
Eucgr.C00762 Eucalyptus grandis HOM05D001363 ORTHO05D002212 4.4e-06 55.8 157 27.4
MCO01G368 Micromonas commoda HOM05D001363 ORTHO05D008648 4.4e-06 55.8 158 29.7
EL10Ac8g19265 Beta vulgaris HOM05D014025 ORTHO05D006255 5.7e-06 55.5 156 26.3
Mapoly0114s0015 Marchantia polymorpha HOM05D001546 ORTHO05D008648 5.7e-06 55.5 153 28.1
PGR142G1755 Punica granatum HOM05D001363 ORTHO05D002212 7.5e-06 55.1 157 28.0
Cre14.g622850 Chlamydomonas reinhardtii HOM05D001363 ORTHO05D002212 9.8e-06 54.7 151 29.1
MBI13_g01696_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 9.8e-06 54.7 153 28.1


User provided reference genes

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