Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 1.9e-193 679.1 375 100.0
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.0e-186 656.8 375 94.4
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.3e-186 655.6 375 96.3
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 8.2e-184 647.1 375 95.2
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.4e-180 636.3 375 92.5
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.5e-180 635.6 363 96.1
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 3.0e-178 628.6 363 95.0
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 5.1e-178 627.9 363 95.0
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 1.0e-173 613.6 367 92.4
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 8.5e-173 610.5 353 95.2
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 1.5e-169 599.7 344 95.9
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 2.6e-169 599.0 344 95.9
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 9.1e-167 590.5 417 81.3
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.3e-160 570.1 366 86.1
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.6e-158 562.4 411 79.3
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 4.5e-158 561.6 376 80.3
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 5.9e-158 561.2 377 81.4
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 7.7e-158 560.8 379 80.2
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 7.7e-158 560.8 377 82.8
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.1e-156 557.0 377 79.6
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 1.9e-156 556.2 366 82.0
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 4.2e-156 555.1 375 79.7
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.2e-155 553.5 374 82.4
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 1.6e-155 553.1 375 79.5
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 3.6e-155 552.0 376 79.3
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 1.0e-154 550.4 374 82.1
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 1.8e-154 549.7 376 81.4
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 3.0e-154 548.9 376 78.2
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 5.2e-154 548.1 377 82.0
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 8.8e-154 547.4 374 81.0
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.2e-153 547.0 374 79.1
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.5e-153 546.6 377 81.7
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 4.4e-153 545.0 377 79.8
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 2.8e-152 542.3 387 76.7
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 8.3e-152 540.8 371 78.7
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 8.3e-152 540.8 377 80.6
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 1.4e-151 540.0 387 78.8
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 1.4e-151 540.0 386 76.4
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 2.4e-151 539.3 379 80.2
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 4.1e-151 538.5 385 79.5
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 4.1e-151 538.5 375 78.1
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 7.0e-151 537.7 373 81.8
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 1.6e-150 536.6 373 78.3
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 5.0e-149 531.6 375 76.3
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 6.5e-149 531.2 386 74.9
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 8.5e-149 530.8 376 80.1
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 1.5e-148 530.0 376 76.6
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 1.9e-148 529.6 376 75.5
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 4.2e-148 528.5 387 75.7
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 2.1e-147 526.2 365 79.5
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 3.6e-147 525.4 387 77.0
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 4.7e-147 525.0 387 74.4
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 8.0e-147 524.2 359 80.8
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 6.8e-146 521.2 367 77.9
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 8.8e-146 520.8 387 76.2
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 1.2e-145 520.4 365 77.3
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 1.2e-145 520.4 365 80.0
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 5.7e-145 518.1 387 76.0
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 1.8e-143 513.1 386 72.8
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 3.1e-143 512.3 390 73.6
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 7.0e-143 511.1 344 79.7
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.2e-142 510.4 378 73.0
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 1.2e-142 510.4 352 78.4
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.0e-142 509.6 390 72.1
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 2.0e-142 509.6 387 76.0
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 3.5e-142 508.8 344 79.7
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.0e-141 507.3 354 76.6
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 1.7e-141 506.5 377 74.8
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.5e-140 502.7 370 75.9
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 2.5e-140 502.7 374 77.0
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 4.2e-140 501.9 329 84.5
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 2.1e-139 499.6 390 72.6
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 6.1e-139 498.0 379 73.6
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.4e-138 496.9 372 75.8
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 4.0e-138 495.4 378 71.2
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 4.0e-138 495.4 344 77.3
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 8.9e-138 494.2 366 76.0
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 9.8e-137 490.7 389 72.8
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 9.8e-137 490.7 389 72.8
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 4.9e-136 488.4 374 74.1
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 6.3e-136 488.0 377 72.1
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 1.1e-135 487.3 346 76.0
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 7.0e-135 484.6 367 73.6
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 7.0e-135 484.6 368 74.5
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 2.0e-134 483.0 387 72.6
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 3.5e-134 482.3 371 73.9
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 5.9e-134 481.5 370 72.4
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 7.8e-134 481.1 365 74.5
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 7.8e-134 481.1 365 74.8
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 7.8e-134 481.1 365 74.8
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 1.3e-133 480.3 346 77.5
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.3e-133 480.3 367 74.1
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 2.9e-133 479.2 346 77.2
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.9e-133 479.2 377 70.3
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 5.0e-133 478.4 350 77.1
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 5.0e-133 478.4 354 75.7
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 6.6e-133 478.0 361 76.2
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 1.9e-132 476.5 370 73.2
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 4.3e-132 475.3 345 76.8
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.1e-131 473.0 358 74.9
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 8.0e-131 471.1 368 72.8
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 1.4e-130 470.3 373 72.1
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.5e-129 466.8 350 74.3
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 3.4e-129 465.7 352 75.3
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 1.7e-128 463.4 378 71.2
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.7e-128 462.2 385 71.4
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 9.2e-127 457.6 356 73.3
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 1.2e-126 457.2 342 75.4
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 1.6e-126 456.8 355 71.8
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 2.5e-124 449.5 320 80.9
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 1.6e-123 446.8 312 76.9
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 1.5e-121 440.3 352 72.2
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 1.9e-119 433.3 359 68.5
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 9.2e-119 431.0 352 71.6
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 3.0e-117 426.0 353 66.0
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 5.1e-117 425.2 371 63.3
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 2.3e-114 416.4 284 84.2
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.6e-113 412.9 350 62.9
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 1.7e-112 410.2 330 71.2
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 3.9e-109 399.1 380 64.2
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.5e-108 397.1 292 80.1
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 2.5e-108 396.4 268 79.5
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.1e-106 391.0 272 78.7
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 2.0e-105 386.7 293 73.7
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.0e-105 386.7 341 60.4
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.9e-104 382.9 349 59.6
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.2e-103 379.4 310 64.8
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 4.3e-100 369.0 389 59.4
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 2.8e-99 366.3 326 60.7
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.6e-99 365.9 286 71.0
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 2.0e-97 360.1 356 57.3
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 1.9e-95 353.6 267 73.4
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 3.5e-94 349.4 342 57.0
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 3.9e-93 345.9 218 85.8
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.3e-92 342.4 354 54.0
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.1e-90 337.8 306 67.3
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 2.3e-85 320.1 354 54.8
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 1.1e-84 317.8 174 95.4
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.7e-80 303.9 224 75.9
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 6.9e-58 228.8 140 92.9
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 5.0e-48 196.1 125 84.0
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 2.2e-40 170.6 140 70.7
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 3.2e-39 166.8 118 75.4
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 4.2e-39 166.4 139 66.9
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.2e-28 131.7 97 70.1
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 2.6e-28 130.6 101 69.3
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 1.3e-27 128.3 79 75.9
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 1.4e-26 124.8 70 81.4
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 9.1e-26 122.1 72 79.2
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 3.5e-25 120.2 81 80.2
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 3.6e-22 110.2 128 55.5
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.5e-20 104.8 100 51.0
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 2.6e-20 104.0 93 63.4
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 2.6e-20 104.0 82 69.5
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 3.9e-16 90.1 130 46.2
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 8.6e-16 89.0 58 84.5
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 3.3e-15 87.0 76 61.8
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 1.8e-13 81.3 59 74.6
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.2e-12 78.6 53 83.0
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.0e-12 77.8 97 51.5
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 2.9e-11 73.9 42 85.7
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 4.9e-11 73.2 66 53.0
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 5.6e-07 59.7 38 84.2


User provided reference genes

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