Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 1.2e-99 366.7 208 100.0
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 1.6e-75 286.6 208 77.4
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 3.0e-71 272.3 202 74.8
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 6.8e-63 244.6 208 69.2
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.3e-61 240.4 208 68.8
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 3.1e-60 235.7 208 68.8
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 3.1e-60 235.7 208 68.8
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 1.5e-57 226.9 198 67.7
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 3.4e-46 189.1 135 72.6
A10p14860 Brassica napus HOM05D007262 ORTHO05D008524 5.8e-46 188.3 164 64.6
C09p49280 Brassica napus HOM05D007262 ORTHO05D008524 7.5e-46 188.0 164 62.2
BolC9t57779H Brassica oleracea HOM05D007262 ORTHO05D008524 7.5e-46 188.0 164 62.2
BraA10t43564Z Brassica rapa HOM05D007262 ORTHO05D008524 7.5e-46 188.0 164 64.6
BcaC04g19970 Brassica carinata HOM05D007262 ORTHO05D008524 2.9e-45 186.0 164 61.6
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 5.4e-36 155.2 198 50.5
Aa31LG3G13290 Aethionema arabicum HOM05D007262 ORTHO05D008524 1.3e-34 150.6 138 60.1
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 1.3e-34 150.6 118 65.3
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 2.3e-34 149.8 141 59.6
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 2.0e-30 136.7 118 59.3
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 5.8e-22 108.6 118 55.9
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 3.8e-21 105.9 117 51.3
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 1.1e-20 104.4 117 51.3
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 1.9e-20 103.6 117 51.3
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 7.1e-20 101.7 117 49.6
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 7.1e-20 101.7 117 49.6
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 9.3e-20 101.3 117 49.6
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 9.3e-20 101.3 123 49.6
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.2e-19 100.9 118 49.2
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 7.8e-19 98.2 114 49.1
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 1.7e-18 97.1 120 49.2
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 1.1e-17 94.4 117 49.6
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 1.3e-16 90.9 120 47.5
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 6.2e-16 88.6 118 46.6
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 4.9e-13 79.0 94 47.9
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 4.9e-13 79.0 100 46.0
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 4.9e-13 79.0 111 45.0
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 8.4e-13 78.2 74 52.7
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.1e-12 77.8 68 51.5
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 1.4e-12 77.4 70 55.7
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 2.4e-12 76.6 68 58.8
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 4.2e-12 75.9 70 55.7
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 5.4e-12 75.5 86 45.3
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 5.4e-12 75.5 69 53.6
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 2.7e-11 73.2 105 40.0
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 3.5e-11 72.8 69 56.5
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 3.5e-11 72.8 69 53.6
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 3.5e-11 72.8 69 53.6
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 4.6e-11 72.4 108 40.7
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 6.0e-11 72.0 103 43.7
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 6.0e-11 72.0 64 54.7
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 6.0e-11 72.0 68 51.5
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 7.9e-11 71.6 63 50.8
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 7.9e-11 71.6 99 43.4
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.3e-10 70.9 68 52.9
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 5.1e-10 68.9 44 70.5
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 5.1e-10 68.9 68 51.5
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 6.7e-10 68.6 108 41.7
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 6.7e-10 68.6 70 50.0
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.1e-09 67.8 87 37.9
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 1.1e-09 67.8 107 42.1
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 1.5e-09 67.4 76 46.1
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 1.9e-09 67.0 41 70.7
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 1.9e-09 67.0 69 44.9
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 2.5e-09 66.6 75 54.7
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 4.3e-09 65.9 69 44.9
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 5.6e-09 65.5 76 44.7
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 7.4e-09 65.1 60 61.7
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 7.4e-09 65.1 62 53.2
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 7.4e-09 65.1 63 52.4
MELO3C017460.2 Cucumis melo HOM05D007262 ORTHO05D008524 9.6e-09 64.7 60 63.3
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 1.3e-08 64.3 108 34.3
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 1.6e-08 63.9 68 47.1
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 1.6e-08 63.9 69 47.8
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 2.1e-08 63.5 68 47.1
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 2.1e-08 63.5 64 53.1
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 2.1e-08 63.5 60 56.7
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 2.1e-08 63.5 82 47.6
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 2.1e-08 63.5 72 50.0
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 3.7e-08 62.8 66 47.0
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 3.7e-08 62.8 41 68.3
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 3.7e-08 62.8 109 38.5
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 6.2e-08 62.0 105 40.0
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 6.2e-08 62.0 88 43.2
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 6.2e-08 62.0 68 50.0
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 6.2e-08 62.0 105 41.9
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 1.1e-07 61.2 109 38.5
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 1.4e-07 60.8 67 41.8
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 2.4e-07 60.1 47 48.9
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 4.0e-07 59.3 42 57.1
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 6.9e-07 58.5 92 41.3
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 2.0e-06 57.0 110 34.5
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 2.0e-06 57.0 93 36.6
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 2.6e-06 56.6 83 43.4
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 3.4e-06 56.2 68 44.1
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 7.6e-06 55.1 67 47.8


User provided reference genes

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