Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1762 Capsella rubella HOM05D005890 ORTHO05D006717 2.5e-98 362.8 305 100.0
AT5G57120 Arabidopsis thaliana HOM05D005890 ORTHO05D006717 3.1e-72 276.2 305 72.8
AL8G33040 Arabidopsis lyrata HOM05D005890 ORTHO05D006717 4.3e-66 255.8 303 68.6
Thhalv10013871m.g Eutrema salsugineum HOM05D005890 ORTHO05D006717 2.7e-60 236.5 340 57.4
BcaB05g22318 Brassica carinata HOM05D005890 ORTHO05D006717 4.6e-60 235.7 327 62.4
CARHR270890 Cardamine hirsuta HOM05D005890 ORTHO05D006717 4.8e-57 225.7 320 60.9
Sp6g18850 Schrenkiella parvula HOM05D005890 ORTHO05D006717 4.5e-55 219.2 335 53.4
BraA02t05941Z Brassica rapa HOM05D005890 ORTHO05D006717 1.3e-51 207.6 341 59.5
A02p08710 Brassica napus HOM05D005890 ORTHO05D006717 5.1e-51 205.7 341 60.7
Aa31LG3G13020 Aethionema arabicum HOM05D005890 ORTHO05D006717 1.9e-50 203.8 348 51.4
BcaC03g14182 Brassica carinata HOM05D005890 ORTHO05D006717 1.9e-50 203.8 347 61.1
C02p14590 Brassica napus HOM05D005890 ORTHO05D006717 1.9e-50 203.8 347 61.1
BolC2t07586H Brassica oleracea HOM05D005890 ORTHO05D006717 1.9e-50 203.8 347 61.1
BcaC04g20011 Brassica carinata HOM05D005890 ORTHO05D006717 2.4e-48 196.8 306 53.6
BcaB08g36002 Brassica carinata HOM05D005890 ORTHO05D006717 4.1e-48 196.1 331 58.6
BolC9t57729H Brassica oleracea HOM05D005890 ORTHO05D006717 6.9e-48 195.3 307 54.1
C09p48820 Brassica napus HOM05D005890 ORTHO05D006717 2.6e-47 193.4 307 53.7
THA.LOC104817770 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.9e-37 160.6 378 48.1
THA.LOC104813501 Tarenaya hassleriana HOM05D005890 ORTHO05D006717 1.0e-35 154.8 391 44.2
Cpa.g.sc115.65 Carica papaya HOM05D005890 ORTHO05D006717 2.9e-30 136.7 122 59.0
Duzib170G1164 Durio zibethinus HOM05D005890 ORTHO05D006717 6.1e-28 129.0 120 58.3
Thecc.09G191500 Theobroma cacao HOM05D005890 ORTHO05D006717 1.8e-27 127.5 96 69.8
TWI32G1283 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 5.2e-27 125.9 91 71.4
Gohir.A05G408300 Gossypium hirsutum HOM05D005890 ORTHO05D006717 6.7e-27 125.6 96 68.8
Gorai.012G008900 Gossypium raimondii HOM05D005890 ORTHO05D006717 6.7e-27 125.6 96 68.8
GSVIVG01029286001 Vitis vinifera HOM05D005890 ORTHO05D006717 1.1e-26 124.8 133 55.6
TWI34G1560 Tripterygium wilfordii HOM05D005890 ORTHO05D006717 2.6e-26 123.6 96 69.8
CDE02G0471 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 2.2e-25 120.6 134 50.7
Potri.006G073100 Populus trichocarpa HOM05D005890 ORTHO05D006717 8.2e-25 118.6 98 68.4
unitig_8.g3553 Utricularia gibba HOM05D005890 ORTHO05D006717 1.4e-24 117.9 93 65.6
CiPaw.07G198700 Carya illinoinensis HOM05D005890 ORTHO05D006717 1.8e-24 117.5 133 52.6
Ca_21262_v3 Cicer arietinum L. HOM05D005890 ORTHO05D006717 1.8e-24 117.5 312 40.1
Potri.018G140200 Populus trichocarpa HOM05D005890 ORTHO05D006717 3.1e-24 116.7 93 67.7
Sabra06G0054500 Salix brachista HOM05D005890 ORTHO05D006717 3.1e-24 116.7 98 68.4
Dinv25461 Davidia involucrata HOM05D005890 ORTHO05D006717 4.1e-24 116.3 93 67.7
Lj4g0027857 Lotus japonicus HOM05D005890 ORTHO05D006717 4.1e-24 116.3 136 50.7
QL07p048247 Quercus lobata HOM05D005890 ORTHO05D006717 4.1e-24 116.3 96 65.6
ATR1098G092 Amborella trichopoda HOM05D005890 ORTHO05D006717 7.0e-24 115.5 96 64.6
Dinv41195 Davidia involucrata HOM05D005890 ORTHO05D006717 9.1e-24 115.2 93 67.7
Eucgr.C02214 Eucalyptus grandis HOM05D005890 ORTHO05D006717 1.2e-23 114.8 122 52.5
CDE05G3513 Ceratophyllum demersum HOM05D005890 ORTHO05D006717 1.6e-23 114.4 125 49.6
Glyma.13G101600 Glycine max HOM05D005890 ORTHO05D006717 1.6e-23 114.4 333 35.4
Zm00001eb136110 Zea mays HOM05D005890 ORTHO05D006717 1.6e-23 114.4 96 62.5
RcHm_v2.0_Chr4g0398981 Rosa chinensis HOM05D005890 ORTHO05D006717 2.0e-23 114.0 93 66.7
CANSAT01G0113 Cannabis sativa HOM05D005890 ORTHO05D006717 2.6e-23 113.6 93 65.6
Ciclev10008727m.g Citrus clementina HOM05D005890 ORTHO05D006717 4.5e-23 112.8 133 51.1
vmacro20806 Vaccinium macrocarpon HOM05D005890 ORTHO05D006717 4.5e-23 112.8 90 65.6
SGA_v2.0_scaffold392G50652 Striga asiatica HOM05D005890 ORTHO05D006717 5.9e-23 112.5 97 63.9
CsaV3_3G012070 Cucumis sativus L. HOM05D005890 ORTHO05D006717 7.7e-23 112.1 93 65.6
DCAR_018014 Daucus carota HOM05D005890 ORTHO05D006717 7.7e-23 112.1 98 65.3
FAN17G2561 Fragaria x ananassa HOM05D005890 ORTHO05D006717 7.7e-23 112.1 348 32.5
MD16G1246300 Malus domestica HOM05D005890 ORTHO05D006717 7.7e-23 112.1 97 64.9
ClCG06G013720 Citrullus lanatus HOM05D005890 ORTHO05D006717 1.0e-22 111.7 93 66.7
MELO3C006422.2 Cucumis melo HOM05D005890 ORTHO05D006717 1.0e-22 111.7 93 65.6
EL10Ac8g19296 Beta vulgaris HOM05D005890 ORTHO05D006717 1.3e-22 111.3 91 62.6
Oeu063100.1 Olea europaea HOM05D005890 ORTHO05D006717 1.3e-22 111.3 142 47.9
Peaxi162Scf00046g00417 Petunia axillaris HOM05D005890 ORTHO05D006717 1.3e-22 111.3 98 63.3
Sed0014693 Sechium edule HOM05D005890 ORTHO05D006717 1.3e-22 111.3 93 66.7
CSS0049336 Camellia sinensis var. sinensis HOM05D005890 ORTHO05D006717 1.7e-22 110.9 90 65.6
FAN12G2329 Fragaria x ananassa HOM05D005890 ORTHO05D006717 1.7e-22 110.9 348 31.6
Nitab4.5_0000028g0410 Nicotiana tabacum HOM05D005890 ORTHO05D006717 1.7e-22 110.9 134 47.8
PGR044G2166 Punica granatum HOM05D005890 ORTHO05D006717 1.7e-22 110.9 124 54.0
Hund24378 Selenicereus undatus HOM05D005890 ORTHO05D006717 1.7e-22 110.9 99 62.6
Aqoxy7G02888 Aquilegia oxysepala HOM05D005890 ORTHO05D006717 2.2e-22 110.5 98 63.3
arahy.Tifrunner.gnm1.ann1.CB00ZF Arachis hypogaea HOM05D005890 ORTHO05D006717 2.2e-22 110.5 95 63.2
arahy.Tifrunner.gnm1.ann1.V3N0NP Arachis hypogaea HOM05D005890 ORTHO05D006717 2.2e-22 110.5 95 63.2
Nn8g40670 Nelumbo nucifera HOM05D005890 ORTHO05D006717 2.2e-22 110.5 95 63.2
Atru.BG.17.p Acer truncatum HOM05D005890 ORTHO05D006717 2.9e-22 110.2 93 64.5
Atru.chr7.926 Acer truncatum HOM05D005890 ORTHO05D006717 2.9e-22 110.2 93 64.5
CAN.G403.1 Capsicum annuum HOM05D005890 ORTHO05D006717 2.9e-22 110.2 97 61.9
Cfa013466 Carpinus fangiana HOM05D005890 ORTHO05D006717 2.9e-22 110.2 97 59.8
Hma1.2p1_0235F.1_g098760 Hydrangea macrophylla HOM05D005890 ORTHO05D006717 2.9e-22 110.2 88 69.3
Nitab4.5_0004916g0020 Nicotiana tabacum HOM05D005890 ORTHO05D006717 2.9e-22 110.2 97 61.9
Actinidia02494 Actinidia chinensis HOM05D005890 ORTHO05D006717 3.8e-22 109.8 88 67.0
ECA234G0353 Erigeron canadensis HOM05D005890 ORTHO05D006717 3.8e-22 109.8 103 61.2
VMungo1215G0729 Vigna mungo HOM05D005890 ORTHO05D006717 3.8e-22 109.8 345 30.7
FAN07G1770 Fragaria x ananassa HOM05D005890 ORTHO05D006717 5.0e-22 109.4 348 31.9
Medtr4g127160 Medicago truncatula HOM05D005890 ORTHO05D006717 5.0e-22 109.4 95 61.1
ECA240G0208 Erigeron canadensis HOM05D005890 ORTHO05D006717 8.5e-22 108.6 94 60.6
Manes.06G017800 Manihot esculenta HOM05D005890 ORTHO05D006717 1.1e-21 108.2 79 70.9
Os12g0613500 Oryza sativa ssp. japonica HOM05D005890 ORTHO05D006717 1.1e-21 108.2 96 59.4
Solyc07g008330.3 Solanum lycopersicum HOM05D005890 ORTHO05D006717 1.1e-21 108.2 97 60.8
Sopen07g004220 Solanum pennellii HOM05D005890 ORTHO05D006717 1.1e-21 108.2 97 60.8
PGSC0003DMG400019897 Solanum tuberosum HOM05D005890 ORTHO05D006717 1.1e-21 108.2 97 60.8
MSTRG.26556 Avicennia marina HOM05D005890 ORTHO05D006717 1.9e-21 107.5 134 47.8
Rhsim01G0114500 Rhododendron simsii HOM05D005890 ORTHO05D006717 1.9e-21 107.5 88 64.8
Sed0024384 Sechium edule HOM05D005890 ORTHO05D006717 1.9e-21 107.5 98 63.3
AUR62027422 Chenopodium quinoa HOM05D005890 ORTHO05D006717 3.2e-21 106.7 92 60.9
TAR637G0001 Trochodendron aralioides HOM05D005890 ORTHO05D006717 3.2e-21 106.7 79 67.1
Lalb_Chr13g0299851 Lupinus albus HOM05D005890 ORTHO05D006717 4.2e-21 106.3 353 39.1
Phvul.003G140452 Phaseolus vulgaris HOM05D005890 ORTHO05D006717 4.2e-21 106.3 95 60.0
Cc03_g15250 Coffea canephora HOM05D005890 ORTHO05D006717 5.5e-21 105.9 98 62.2
Lsat_1_v5_gn_7_55781 Lactuca sativa HOM05D005890 ORTHO05D006717 5.5e-21 105.9 86 66.3
Prupe.1G073000 Prunus persica HOM05D005890 ORTHO05D006717 5.5e-21 105.9 90 63.3
Migut.L01872 Erythranthe guttata HOM05D005890 ORTHO05D006717 7.2e-21 105.5 318 36.2
Psat4g014480 Pisum sativum HOM05D005890 ORTHO05D006717 7.2e-21 105.5 85 63.5
AUR62031274 Chenopodium quinoa HOM05D005890 ORTHO05D006717 9.4e-21 105.1 307 33.2
HanXRQChr03g0065401 Helianthus annuus HOM05D005890 ORTHO05D006717 1.2e-20 104.8 97 62.9
SEGI_20539 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.2e-20 104.8 95 58.9
TPR.G5393 Trifolium pratense HOM05D005890 ORTHO05D006717 1.2e-20 104.8 93 60.2
Glyma.17G058000 Glycine max HOM05D005890 ORTHO05D006717 1.6e-20 104.4 337 30.3
HPP92_018699 Vanilla planifolia HOM05D005890 ORTHO05D006717 2.7e-20 103.6 90 62.2
MBI18_g10586_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 6.1e-20 102.4 92 64.1
Lsat_1_v5_gn_5_83860 Lactuca sativa HOM05D005890 ORTHO05D006717 1.0e-19 101.7 89 61.8
MBI14_g15782_MAGBIO Magnolia biondii HOM05D005890 ORTHO05D006717 1.8e-19 100.9 78 65.4
Ah.14g085350 Amaranthus hybridus HOM05D005890 ORTHO05D006717 2.3e-19 100.5 79 62.0
PSO170G0082 Papaver somniferum HOM05D005890 ORTHO05D006717 3.0e-19 100.1 88 60.2
HanXRQChr10g0308981 Helianthus annuus HOM05D005890 ORTHO05D006717 4.0e-19 99.8 334 50.6
PSO063G0609 Papaver somniferum HOM05D005890 ORTHO05D006717 4.0e-19 99.8 88 60.2
Pp3c3_34440 Physcomitrium patens HOM05D005890 ORTHO05D006717 8.8e-19 98.6 83 63.9
Pp3c3_34441 Physcomitrium patens HOM05D005890 ORTHO05D006717 8.8e-19 98.6 83 63.9
Mapoly0009s0141 Marchantia polymorpha HOM05D005890 ORTHO05D006717 1.3e-17 94.7 128 42.2
AagrBONN_evm.TU.Sc2ySwM_368.973 Anthoceros agrestis HOM05D005890 ORTHO05D006717 2.8e-17 93.6 81 58.0
SGA_v2.0_scaffold41G15805 Striga asiatica HOM05D005890 ORTHO05D006717 2.4e-16 90.5 70 64.3
Zm00001eb172010 Zea mays HOM05D005890 ORTHO05D006717 4.1e-16 89.7 80 57.5
SEGI_22268 Sequoiadendron giganteum HOM05D005890 ORTHO05D006717 1.7e-14 84.3 67 64.2
CBR_g20282 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-14 83.6 61 63.9
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 2.9e-14 83.6 70 62.9
BcaC06g35794 Brassica carinata HOM05D018474 ORTHO05D027757 2.7e-12 77.0 103 48.5
BolC7t41545H Brassica oleracea HOM05D018474 ORTHO05D027757 2.7e-12 77.0 103 48.5
C07p10770 Brassica napus HOM05D018474 ORTHO05D027757 4.7e-12 76.3 103 48.5
Cre01.g055400 Chlamydomonas reinhardtii HOM05D005890 ORTHO05D006717 1.4e-11 74.7 80 53.8
Zm00001eb394450 Zea mays HOM05D014690 ORTHO05D006717 4.4e-10 69.7 50 68.0
MCO09G065 Micromonas commoda HOM05D005890 ORTHO05D006717 1.7e-09 67.8 90 46.7
COL.COLO4_08570 Corchorus olitorius HOM05D005890 ORTHO05D006717 1.4e-08 64.7 48 66.7
BolC7t41550H Brassica oleracea HOM05D018474 ORTHO05D027757 2.4e-08 63.9 103 43.7
A10p14440 Brassica napus HOM05D005890 ORTHO05D006717 1.0e-06 58.5 33 81.8
BraA10t43535Z Brassica rapa HOM05D005890 ORTHO05D006717 1.0e-06 58.5 33 81.8
Cpa.g.c33129.1 Carica papaya HOM05D005890 ORTHO05D006717 1.0e-06 58.5 69 55.1
Sabra18G0114500 Salix brachista HOM05D005890 ORTHO05D006717 8.6e-06 55.5 91 41.8


User provided reference genes

Program Settings