Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1734 Capsella rubella HOM05D007990 ORTHO05D009984 1.8e-73 279.3 152 100.0
AT5G56880 Arabidopsis thaliana HOM05D007990 ORTHO05D009984 9.7e-59 230.3 155 78.1
AL8G32730 Arabidopsis lyrata HOM05D007990 ORTHO05D009984 5.0e-55 218.0 123 87.0
Sp6g18600 Schrenkiella parvula HOM05D007990 ORTHO05D009984 1.0e-52 210.3 156 71.2
BcaB01g04425 Brassica carinata HOM05D007990 ORTHO05D009984 3.9e-52 208.4 155 71.0
C03p15320 Brassica napus HOM05D007990 ORTHO05D009984 9.7e-51 203.8 156 70.5
BolC3t13974H Brassica oleracea HOM05D007990 ORTHO05D009984 6.3e-50 201.1 154 71.4
A03p13100 Brassica napus HOM05D007990 ORTHO05D009984 2.4e-49 199.1 156 70.5
BraA03t10620Z Brassica rapa HOM05D007990 ORTHO05D009984 2.4e-49 199.1 156 70.5
Thhalv10015576m.g Eutrema salsugineum HOM05D007990 ORTHO05D009984 2.4e-49 199.1 157 69.4
CARHR270630 Cardamine hirsuta HOM05D007990 ORTHO05D009984 6.9e-49 197.6 151 72.2
BcaB08g36048 Brassica carinata HOM05D007990 ORTHO05D009984 5.9e-48 194.5 155 67.7
C09p48510 Brassica napus HOM05D007990 ORTHO05D009984 6.5e-47 191.0 155 67.1
BcaC04g20046 Brassica carinata HOM05D007990 ORTHO05D009984 4.2e-46 188.3 155 66.5
BolC9t57693H Brassica oleracea HOM05D007990 ORTHO05D009984 4.2e-46 188.3 155 66.5
BcaC04g20048 Brassica carinata HOM05D007990 ORTHO05D009984 5.0e-39 164.9 115 75.7
BolC9t57691H Brassica oleracea HOM05D007990 ORTHO05D009984 5.0e-39 164.9 115 75.7
C09p48480 Brassica napus HOM05D007990 ORTHO05D009984 8.5e-39 164.1 112 76.8
THA.LOC104813262 Tarenaya hassleriana HOM05D007990 ORTHO05D009984 2.5e-22 109.4 138 50.0
BraA10t43507Z Brassica rapa HOM05D007990 ORTHO05D009984 4.2e-22 108.6 116 58.6
Thecc.09G089300 Theobroma cacao HOM05D007990 ORTHO05D009984 8.3e-18 94.4 148 41.2
Duzib168G0718 Durio zibethinus HOM05D007990 ORTHO05D009984 9.2e-17 90.9 172 35.5
TWI63G1466 Tripterygium wilfordii HOM05D007990 ORTHO05D009984 3.5e-16 89.0 146 41.8
TWI32G0510 Tripterygium wilfordii HOM05D007990 ORTHO05D009984 7.8e-16 87.8 146 40.4
Hma1.2p1_0798F.1_g219830 Hydrangea macrophylla HOM05D007990 ORTHO05D009984 1.3e-15 87.0 159 39.6
Nitab4.5_0004526g0040 Nicotiana tabacum HOM05D007990 ORTHO05D009984 1.3e-15 87.0 75 62.7
Nitab4.5_0006552g0010 Nicotiana tabacum HOM05D007990 ORTHO05D009984 2.9e-15 85.9 141 40.4
Sed0000223 Sechium edule HOM05D007990 ORTHO05D009984 2.9e-15 85.9 125 41.6
Gohir.D07G011200 Gossypium hirsutum HOM05D007990 ORTHO05D009984 1.5e-14 83.6 166 34.3
Gorai.001G011900 Gossypium raimondii HOM05D007990 ORTHO05D009984 1.5e-14 83.6 166 34.3
Gohir.A06G072600 Gossypium hirsutum HOM05D007990 ORTHO05D009984 2.5e-14 82.8 148 39.2
Gohir.A07G011300 Gossypium hirsutum HOM05D007990 ORTHO05D009984 2.5e-14 82.8 134 38.8
THA.LOC104817754 Tarenaya hassleriana HOM05D007990 ORTHO05D009984 5.6e-14 81.6 94 53.2
ClCG11G001750 Citrullus lanatus HOM05D007990 ORTHO05D009984 9.5e-14 80.9 134 40.3
COL.COLO4_18199 Corchorus olitorius HOM05D007990 ORTHO05D009984 1.2e-13 80.5 102 47.1
Atru.chr7.1590 Acer truncatum HOM05D007990 ORTHO05D009984 1.6e-13 80.1 115 46.1
Manes.03G033800 Manihot esculenta HOM05D007990 ORTHO05D009984 1.6e-13 80.1 116 41.4
SGA_v2.0_scaffold62G21609 Striga asiatica HOM05D007990 ORTHO05D009984 2.8e-13 79.3 104 51.0
Cc06_g11410 Coffea canephora HOM05D007990 ORTHO05D009984 3.6e-13 79.0 82 50.0
Sc18g0001980 Simmondsia chinensis HOM05D007990 ORTHO05D009984 3.6e-13 79.0 101 49.5
Ciclev10010560m.g Citrus clementina HOM05D007990 ORTHO05D009984 4.7e-13 78.6 109 43.1
Oeu041221.1 Olea europaea HOM05D007990 ORTHO05D009984 1.8e-12 76.6 70 55.7
CiPaw.03G215900 Carya illinoinensis HOM05D007990 ORTHO05D009984 3.0e-12 75.9 153 33.3
MELO3C004625.2 Cucumis melo HOM05D007990 ORTHO05D009984 3.0e-12 75.9 139 37.4
CsaV3_2G001460 Cucumis sativus L. HOM05D007990 ORTHO05D009984 5.2e-12 75.1 143 39.2
Gohir.D06G071200 Gossypium hirsutum HOM05D007990 ORTHO05D009984 6.8e-12 74.7 124 38.7
Gorai.010G083000 Gossypium raimondii HOM05D007990 ORTHO05D009984 8.9e-12 74.3 124 38.7
Migut.J00619 Erythranthe guttata HOM05D007990 ORTHO05D009984 2.6e-11 72.8 50 70.0
Cfa003085 Carpinus fangiana HOM05D007990 ORTHO05D009984 3.4e-11 72.4 97 45.4
Lsat_1_v5_gn_5_142501 Lactuca sativa HOM05D007990 ORTHO05D009984 1.7e-10 70.1 153 34.6
Dinv36767 Davidia involucrata HOM05D007990 ORTHO05D009984 2.2e-10 69.7 114 42.1
Lj4g0018248 Lotus japonicus HOM05D007990 ORTHO05D009984 2.2e-10 69.7 49 73.5
Ah.09g228280 Amaranthus hybridus HOM05D007990 ORTHO05D009984 2.9e-10 69.3 91 41.8
A10p14150 Brassica napus HOM05D007990 ORTHO05D009984 3.7e-10 68.9 87 51.7
Hma1.2p1_2664F.1_g326450 Hydrangea macrophylla HOM05D007990 ORTHO05D009984 3.7e-10 68.9 121 38.8
QL02p062610 Quercus lobata HOM05D007990 ORTHO05D009984 3.7e-10 68.9 111 42.3
Actinidia29902 Actinidia chinensis HOM05D007990 ORTHO05D009984 8.3e-10 67.8 81 46.9
DCAR_032237 Daucus carota HOM05D007990 ORTHO05D009984 1.4e-09 67.0 142 35.9
FvH4_1g07430 Fragaria vesca HOM05D023113 ORTHO05D009984 1.8e-09 66.6 140 35.7
FAN19G1041 Fragaria x ananassa HOM05D023113 ORTHO05D009984 1.8e-09 66.6 140 35.7
MD02G1079500 Malus domestica HOM05D007990 ORTHO05D009984 2.4e-09 66.2 69 52.2
Rhsim03G0232200 Rhododendron simsii HOM05D007990 ORTHO05D009984 4.1e-09 65.5 79 49.4
Haze_25914 Corylus avellana HOM05D007990 ORTHO05D009984 7.0e-09 64.7 103 40.8
FAN26G0609 Fragaria x ananassa HOM05D023113 ORTHO05D009984 9.2e-09 64.3 96 42.7
Prupe.7G209700 Prunus persica HOM05D007990 ORTHO05D009984 9.2e-09 64.3 146 35.6
TPR.G9474 Trifolium pratense HOM05D000085 ORTHO05D001460 9.2e-09 64.3 57 61.4
DCAR_028590 Daucus carota HOM05D007990 ORTHO05D009984 1.2e-08 63.9 110 39.1
FAN26G2796 Fragaria x ananassa HOM05D023113 ORTHO05D009984 1.2e-08 63.9 96 42.7
FAN28G0129 Fragaria x ananassa HOM05D023113 ORTHO05D009984 1.2e-08 63.9 96 42.7
HanXRQChr10g0319321 Helianthus annuus HOM05D007990 ORTHO05D009984 1.6e-08 63.5 107 40.2
Medtr4g126310 Medicago truncatula HOM05D007990 ORTHO05D009984 2.0e-08 63.2 48 64.6
MD15G1207000 Malus domestica HOM05D007990 ORTHO05D009984 2.7e-08 62.8 69 49.3
Ca_21278_v3 Cicer arietinum L. HOM05D007990 ORTHO05D009984 3.5e-08 62.4 48 64.6
PGR102G1891 Punica granatum HOM05D007990 ORTHO05D009984 3.5e-08 62.4 102 45.1
HanXRQChr12g0354891 Helianthus annuus HOM05D007990 ORTHO05D009984 4.6e-08 62.0 78 46.2
AUR62027510 Chenopodium quinoa HOM05D007990 ORTHO05D009984 5.9e-08 61.6 59 54.2
Lj7P676T16 Lonicera japonica HOM05D007990 ORTHO05D009984 5.9e-08 61.6 86 44.2
CANSAT56G4255 Cannabis sativa HOM05D007990 ORTHO05D009984 7.8e-08 61.2 96 43.8
TAR383G0124 Trochodendron aralioides HOM05D009710 ORTHO05D011230 5.0e-07 58.5 75 40.0
ECA234G1790 Erigeron canadensis HOM05D007990 ORTHO05D009984 9.5e-06 54.3 110 39.1


User provided reference genes

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