Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1702 Capsella rubella HOM05D004778 ORTHO05D005679 2.5e-21 104.8 61 100.0
AL8G32300 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 8.7e-19 96.3 61 91.8
Sp6g18330 Schrenkiella parvula HOM05D004778 ORTHO05D005679 5.7e-18 93.6 61 88.5
CARHR270190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 1.6e-17 92.0 61 86.9
AT5G56540 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 6.3e-17 90.1 61 85.2
BcaC03g14215 Brassica carinata HOM05D004778 ORTHO05D005679 1.8e-16 88.6 61 80.3
C02p15150 Brassica napus HOM05D004778 ORTHO05D005679 1.8e-16 88.6 61 80.3
BolC2t07632H Brassica oleracea HOM05D004778 ORTHO05D005679 1.8e-16 88.6 61 80.3
A02p09020 Brassica napus HOM05D004778 ORTHO05D005679 5.3e-16 87.0 61 80.3
BraA02t05971Z Brassica rapa HOM05D004778 ORTHO05D005679 5.3e-16 87.0 61 80.3
Aa31LG3G12430 Aethionema arabicum HOM05D004778 ORTHO05D005679 6.9e-16 86.7 61 78.7
BcaB01g04406 Brassica carinata HOM05D004778 ORTHO05D005679 1.5e-15 85.5 61 82.0
BcaC04g20076 Brassica carinata HOM05D004778 ORTHO05D005679 5.9e-15 83.6 61 80.3
C09p48130 Brassica napus HOM05D004778 ORTHO05D005679 5.9e-15 83.6 61 80.3
BolC9t57665H Brassica oleracea HOM05D004778 ORTHO05D005679 5.9e-15 83.6 61 80.3
A10p13910 Brassica napus HOM05D004778 ORTHO05D005679 1.0e-14 82.8 61 78.7
BraA10t43484Z Brassica rapa HOM05D004778 ORTHO05D005679 1.0e-14 82.8 61 78.7
AL7G26630 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 3.2e-13 77.8 61 80.3
AT4G26320 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 9.4e-13 76.3 61 78.7
A03p56600 Brassica napus HOM05D004778 ORTHO05D005679 2.7e-12 74.7 61 77.0
C07p54800 Brassica napus HOM05D004778 ORTHO05D005679 2.7e-12 74.7 61 75.4
BcaNung02429 Brassica carinata HOM05D004778 ORTHO05D005679 3.6e-12 74.3 61 73.8
BraA03t14730Z Brassica rapa HOM05D004778 ORTHO05D005679 3.6e-12 74.3 61 77.0
BolC7t45969H Brassica oleracea HOM05D004778 ORTHO05D005679 4.6e-12 73.9 61 75.4
BcaC09g50690 Brassica carinata HOM05D004778 ORTHO05D005679 1.8e-11 72.0 61 73.8
C01p22170 Brassica napus HOM05D004778 ORTHO05D005679 1.8e-11 72.0 61 73.8
BolC1t02147H Brassica oleracea HOM05D004778 ORTHO05D005679 1.8e-11 72.0 61 73.8
Thhalv10027232m.g Eutrema salsugineum HOM05D004778 ORTHO05D005679 1.8e-11 72.0 61 73.8
BcaC06g32759 Brassica carinata HOM05D004778 ORTHO05D005679 3.0e-11 71.2 61 73.8
A01p17570 Brassica napus HOM05D004778 ORTHO05D005679 3.0e-11 71.2 61 72.1
BraA01t01710Z Brassica rapa HOM05D004778 ORTHO05D005679 3.0e-11 71.2 61 72.1
PGR102G2573 Punica granatum HOM05D004778 ORTHO05D005679 5.1e-11 70.5 61 63.9
MD03G1004000 Malus domestica HOM05D004778 ORTHO05D005679 6.7e-11 70.1 62 72.6
Thecc.05G250100 Theobroma cacao HOM05D004778 ORTHO05D005679 1.1e-10 69.3 61 68.9
Carub.0007s1462 Capsella rubella HOM05D004778 ORTHO05D005679 1.5e-10 68.9 61 70.5
Cfa009564 Carpinus fangiana HOM05D004778 ORTHO05D005679 1.5e-10 68.9 62 69.4
Cpa.g.sc119.43 Carica papaya HOM05D004778 ORTHO05D005679 2.0e-10 68.6 61 65.6
Nn2g15855 Nelumbo nucifera HOM05D004778 ORTHO05D005679 2.0e-10 68.6 61 68.9
CARHR233890 Cardamine hirsuta HOM05D004778 ORTHO05D005679 4.4e-10 67.4 61 70.5
Potri.019G035500 Populus trichocarpa HOM05D004778 ORTHO05D005679 5.7e-10 67.0 61 62.3
THA.LOC109116609 Tarenaya hassleriana HOM05D004778 ORTHO05D005679 9.7e-10 66.2 62 67.7
PSO339G3914 Papaver somniferum HOM05D004778 ORTHO05D005679 1.7e-09 65.5 61 59.0
Rhsim13G0232700 Rhododendron simsii HOM05D004778 ORTHO05D005679 1.7e-09 65.5 61 60.7
Gohir.D11G246400 Gossypium hirsutum HOM05D004778 ORTHO05D005679 2.2e-09 65.1 61 60.7
Hma1.2p1_0152F.1_g067660 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 3.7e-09 64.3 61 63.9
Cfa001534 Carpinus fangiana HOM05D004778 ORTHO05D005679 4.8e-09 63.9 61 59.0
Duzib128G0115 Durio zibethinus HOM05D004778 ORTHO05D005679 4.8e-09 63.9 61 62.3
Potri.003G220900 Populus trichocarpa HOM05D004778 ORTHO05D005679 4.8e-09 63.9 61 60.7
CiPaw.14G136700 Carya illinoinensis HOM05D004778 ORTHO05D005679 8.2e-09 63.2 61 62.3
AT3G13520 Arabidopsis thaliana HOM05D004778 ORTHO05D005679 1.1e-08 62.8 61 59.0
Hma1.2p1_0589F.1_g184910 Hydrangea macrophylla HOM05D004778 ORTHO05D005679 1.4e-08 62.4 61 63.9
Duzib177G0058 Durio zibethinus HOM05D004778 ORTHO05D005679 1.8e-08 62.0 61 57.4
Duzib106G1560 Durio zibethinus HOM05D004778 ORTHO05D005679 2.4e-08 61.6 61 59.0
Potri.013G057500 Populus trichocarpa HOM05D004778 ORTHO05D005679 2.4e-08 61.6 62 61.3
TAR633G1575 Trochodendron aralioides HOM05D004778 ORTHO05D005679 2.4e-08 61.6 61 62.3
Prupe.6G003500 Prunus persica HOM05D004778 ORTHO05D005679 3.1e-08 61.2 61 60.7
Duzib106G0337 Durio zibethinus HOM05D004778 ORTHO05D005679 4.1e-08 60.8 61 57.4
Lalb_Chr22g0359101 Lupinus albus HOM05D004778 ORTHO05D005679 4.1e-08 60.8 62 61.3
Manes.08G144900 Manihot esculenta HOM05D004778 ORTHO05D005679 6.9e-08 60.1 59 57.6
Sabra19G0043900 Salix brachista HOM05D004778 ORTHO05D005679 9.1e-08 59.7 62 61.3
Sabra19G0047200 Salix brachista HOM05D004778 ORTHO05D005679 9.1e-08 59.7 62 61.3
TAR623G1546 Trochodendron aralioides HOM05D004778 ORTHO05D005679 9.1e-08 59.7 61 57.4
Eucgr.K01501 Eucalyptus grandis HOM05D004778 ORTHO05D005679 1.2e-07 59.3 59 62.7
Gohir.A13G099600 Gossypium hirsutum HOM05D004778 ORTHO05D005679 2.0e-07 58.5 61 57.4
TWI32G0653 Tripterygium wilfordii HOM05D004778 ORTHO05D005679 2.0e-07 58.5 61 54.1
BraA05t22399Z Brassica rapa HOM05D004778 ORTHO05D005679 3.4e-07 57.8 62 56.5
Manes.09G140700 Manihot esculenta HOM05D004778 ORTHO05D005679 3.4e-07 57.8 61 59.0
PSO339G4337 Papaver somniferum HOM05D004778 ORTHO05D005679 4.5e-07 57.4 61 59.0
PSO384G2791 Papaver somniferum HOM05D004778 ORTHO05D005679 4.5e-07 57.4 61 59.0
Aqoxy1G00473 Aquilegia oxysepala HOM05D004778 ORTHO05D005679 5.9e-07 57.0 61 57.4
AL3G25430 Arabidopsis lyrata HOM05D004778 ORTHO05D005679 5.9e-07 57.0 61 54.1
CARHR088190 Cardamine hirsuta HOM05D004778 ORTHO05D005679 5.9e-07 57.0 62 56.5
PGSC0003DMG400008381 Solanum tuberosum HOM05D004778 ORTHO05D005679 5.9e-07 57.0 62 58.1
Aa31LG8G720 Aethionema arabicum HOM05D004778 ORTHO05D005679 7.7e-07 56.6 54 57.4
Medtr7g085780 Medicago truncatula HOM05D004778 ORTHO05D005679 7.7e-07 56.6 62 58.1
PSO384G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 7.7e-07 56.6 61 57.4
BcaNung06233 Brassica carinata HOM05D004778 ORTHO05D005679 1.0e-06 56.2 62 54.8
BolC5t34103H Brassica oleracea HOM05D004778 ORTHO05D005679 1.0e-06 56.2 62 54.8
Medtr6g029260 Medicago truncatula HOM05D004778 ORTHO05D005679 1.0e-06 56.2 62 58.1
CANSAT78G1478 Cannabis sativa HOM05D004778 ORTHO05D005679 1.3e-06 55.8 61 54.1
Ca_08272_v3 Cicer arietinum L. HOM05D004778 ORTHO05D005679 1.3e-06 55.8 62 58.1
Glyma.16G040400 Glycine max HOM05D004778 ORTHO05D005679 1.3e-06 55.8 62 58.1
PGR142G3834 Punica granatum HOM05D004778 ORTHO05D005679 1.3e-06 55.8 62 59.7
BcaC01g01515 Brassica carinata HOM05D004778 ORTHO05D005679 1.7e-06 55.5 59 59.3
C03p92630 Brassica napus HOM05D004778 ORTHO05D005679 1.7e-06 55.5 59 59.3
BolC3t21577H Brassica oleracea HOM05D004778 ORTHO05D005679 1.7e-06 55.5 59 59.3
Sabra03G0164400 Salix brachista HOM05D004778 ORTHO05D005679 1.7e-06 55.5 54 57.4
A08p00710 Brassica napus HOM05D004778 ORTHO05D005679 2.2e-06 55.1 59 59.3
BraA08t32128Z Brassica rapa HOM05D004778 ORTHO05D005679 2.2e-06 55.1 59 59.3
PSO339G3395 Papaver somniferum HOM05D004778 ORTHO05D005679 2.2e-06 55.1 61 59.0
COL.COLO4_36083 Corchorus olitorius HOM05D004778 ORTHO05D005679 2.9e-06 54.7 63 55.6
BcaB05g23546 Brassica carinata HOM05D004778 ORTHO05D005679 3.8e-06 54.3 62 54.8
PSO339G1550 Papaver somniferum HOM05D004778 ORTHO05D005679 3.8e-06 54.3 61 59.0
Sp1g41010 Schrenkiella parvula HOM05D004778 ORTHO05D005679 3.8e-06 54.3 62 61.3
A05p17520 Brassica napus HOM05D004778 ORTHO05D005679 5.0e-06 53.9 62 58.1
BraA05t20646Z Brassica rapa HOM05D004778 ORTHO05D005679 5.0e-06 53.9 62 58.1
Potri.001G004100 Populus trichocarpa HOM05D004778 ORTHO05D005679 5.0e-06 53.9 61 55.7
BcaB04g16964 Brassica carinata HOM05D004778 ORTHO05D005679 6.5e-06 53.5 59 57.6
Carub.0003s1299 Capsella rubella HOM05D004778 ORTHO05D005679 6.5e-06 53.5 62 54.8
BcaC08g43615 Brassica carinata HOM05D004778 ORTHO05D005679 8.5e-06 53.1 62 58.1
C06p10290 Brassica napus HOM05D004778 ORTHO05D005679 8.5e-06 53.1 62 58.1


User provided reference genes

Program Settings