Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 9.6e-34 146.7 104 100.0
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.5e-29 132.1 66 92.4
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 7.1e-29 130.6 66 92.4
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 7.9e-28 127.1 66 90.9
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 6.7e-27 124.0 104 81.7
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 8.7e-27 123.6 65 89.2
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-26 122.9 63 90.5
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-26 122.9 63 90.5
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 1.5e-26 122.9 63 90.5
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 9.6e-26 120.2 64 87.5
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 9.6e-26 120.2 64 87.5
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.6e-25 119.4 104 73.1
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 3.7e-25 118.2 104 69.2
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 4.5e-23 111.3 63 85.7
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.1e-21 106.7 66 75.8
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 7.2e-21 104.0 65 69.2
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.3e-19 99.0 104 50.0
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 3.0e-19 98.6 60 80.0
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 5.1e-19 97.8 64 73.4
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.9e-18 95.9 66 69.7
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.9e-18 95.9 64 70.3
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-17 93.2 65 64.6
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.3e-17 93.2 65 64.6
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 1.6e-17 92.8 64 68.8
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 1.6e-17 92.8 64 68.8
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 3.7e-17 91.7 64 68.8
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 3.7e-17 91.7 64 67.2
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 4.8e-17 91.3 64 70.3
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 4.8e-17 91.3 64 67.2
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 6.3e-17 90.9 64 65.6
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-16 90.1 64 68.8
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 1.1e-16 90.1 64 64.1
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 5.3e-16 87.8 64 60.9
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.9e-15 84.3 65 53.8
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.0e-14 83.6 65 50.8
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 2.2e-14 82.4 65 49.2
A03p13340 Brassica napus HOM05D004137 ORTHO05D004804 5.0e-14 81.3 51 80.4
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 8.5e-14 80.5 65 50.8
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.4e-13 79.7 64 56.2
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.9e-13 79.3 64 54.7
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 2.1e-12 75.9 65 53.8
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 4.6e-12 74.7 63 54.0
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 6.1e-12 74.3 65 49.2
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.0e-11 73.6 63 60.3
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 1.8e-11 72.8 65 44.6
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 5.1e-11 71.2 65 52.3
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 8.8e-11 70.5 65 47.7
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.1e-10 70.1 62 45.2
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 1.5e-10 69.7 65 50.8
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.5e-10 69.7 62 50.0
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 2.0e-10 69.3 65 50.8
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 3.3e-10 68.6 65 49.2
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.3e-10 68.2 65 47.7
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.3e-10 68.2 65 47.7
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 4.3e-10 68.2 63 54.0
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 5.7e-10 67.8 66 45.5
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 5.7e-10 67.8 63 47.6
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 7.4e-10 67.4 62 53.2
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 9.7e-10 67.0 65 47.7
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.3e-09 66.6 63 50.8
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 1.7e-09 66.2 65 46.2
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 2.2e-09 65.9 63 50.8
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.2e-09 65.9 65 46.2
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 4.8e-09 64.7 63 47.6
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.1e-08 63.5 63 46.0
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 1.1e-08 63.5 63 50.8
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 1.4e-08 63.2 63 44.4
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 1.8e-08 62.8 62 51.6
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 2.4e-08 62.4 64 43.8
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 4.1e-08 61.6 65 47.7
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 4.1e-08 61.6 63 49.2
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 4.1e-08 61.6 63 49.2
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 4.1e-08 61.6 56 53.6
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 5.3e-08 61.2 64 46.9
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 6.9e-08 60.8 65 40.0
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 9.1e-08 60.5 62 38.7
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.5e-07 59.7 62 40.3
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 1.5e-07 59.7 63 49.2
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.0e-07 59.3 63 49.2
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 2.6e-07 58.9 65 35.4
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 3.4e-07 58.5 62 46.8
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 4.5e-07 58.2 52 51.9
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 4.5e-07 58.2 65 41.5
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.5e-07 58.2 63 46.0
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 5.9e-07 57.8 64 46.9
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 7.7e-07 57.4 63 46.0
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.0e-06 57.0 65 35.4
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 2.2e-06 55.8 65 33.8
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 2.2e-06 55.8 65 33.8
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 2.2e-06 55.8 54 44.4
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.9e-06 55.5 62 37.1
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 2.9e-06 55.5 65 35.4
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 2.9e-06 55.5 65 35.4
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 2.9e-06 55.5 65 35.4
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 2.9e-06 55.5 65 35.4
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 2.9e-06 55.5 65 35.4
Aa31LG3G710 Aethionema arabicum HOM05D004137 ORTHO05D004804 3.8e-06 55.1 40 72.5
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 5.0e-06 54.7 64 42.2
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 5.0e-06 54.7 62 43.5
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 8.5e-06 53.9 62 38.7


User provided reference genes

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