Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 0.0e+00 1538.9 811 100.0
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 0.0e+00 1223.8 827 81.0
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 0.0e+00 1184.9 824 81.2
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 0.0e+00 1087.0 834 72.5
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 0.0e+00 1083.9 826 72.6
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.1e-305 1051.2 834 73.0
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 9.5e-238 827.4 818 61.9
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 5.2e-236 821.6 829 63.3
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-231 807.4 769 63.8
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 7.6e-227 791.2 825 60.1
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 7.1e-225 784.6 826 59.8
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 1.6e-224 783.5 830 60.1
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-223 780.4 823 59.5
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 1.2e-219 767.3 830 59.4
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 1.9e-198 696.8 818 55.7
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 1.5e-195 687.2 824 55.2
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 8.5e-194 681.4 827 53.8
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 1.4e-191 674.1 824 54.6
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 5.5e-161 572.4 749 51.7
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 1.8e-156 557.4 717 52.2
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 5.9e-147 525.8 988 42.9
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 8.0e-136 488.8 948 42.6
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 6.8e-135 485.7 745 48.2
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.3e-127 460.7 1022 43.1
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.8e-120 437.2 1015 42.0
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 3.1e-119 433.7 1035 39.7
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 4.4e-118 429.9 1028 41.6
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.4e-110 403.3 1003 40.4
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 1.4e-108 398.3 928 39.9
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 5.4e-108 396.4 942 39.9
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 4.6e-107 393.3 962 39.3
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 6.0e-107 392.9 939 39.4
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.3e-104 385.2 959 39.1
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 1.1e-103 382.1 981 36.8
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 1.1e-103 382.1 981 36.8
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 1.8e-103 381.3 967 39.2
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.6e-99 366.7 933 39.3
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 7.9e-99 365.9 1000 36.4
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-98 365.5 808 40.0
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 4.8e-96 356.7 1020 35.9
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 7.6e-94 349.4 1043 36.0
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 6.5e-93 346.3 962 37.0
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.9e-92 344.7 962 37.0
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 5.5e-92 343.2 970 36.6
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 1.6e-91 341.7 1011 35.9
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 2.7e-91 340.9 1009 36.0
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 9.6e-89 332.4 867 39.8
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.1e-66 256.9 195 69.7
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 5.0e-61 240.4 189 70.4
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 1.4e-55 222.2 928 28.9
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.4e-55 222.2 871 31.7
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.6e-54 218.0 923 29.4
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 4.5e-54 217.2 923 29.3
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.3e-53 215.7 983 27.7
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 3.8e-53 214.2 980 28.5
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 5.0e-53 213.8 928 29.2
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.1e-52 212.6 923 28.8
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.4e-50 205.7 837 29.2
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 3.0e-50 204.5 503 36.4
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 1.2e-49 202.6 450 37.3
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 2.6e-49 201.4 595 32.4
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 5.7e-49 200.3 926 28.5
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 9.8e-49 199.5 876 29.3
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 1.3e-48 199.1 884 28.7
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.7e-48 198.7 870 29.8
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.7e-48 198.7 476 35.3
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 3.7e-48 197.6 983 29.3
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 1.6e-46 192.2 742 28.4
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 3.5e-46 191.0 517 34.4
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 1.7e-45 188.7 522 33.7
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 2.2e-45 188.3 839 29.3
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 2.2e-45 188.3 568 31.9
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 5.0e-45 187.2 927 27.6
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 5.0e-45 187.2 991 27.4
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.5e-44 185.7 938 27.1
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 1.5e-44 185.7 889 28.8
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 2.5e-44 184.9 598 31.3
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 3.2e-44 184.5 891 28.5
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.6e-43 182.2 365 38.6
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.6e-43 182.2 365 38.6
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.6e-43 182.2 609 31.2
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 2.1e-43 181.8 948 28.8
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.1e-43 181.8 611 31.8
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.6e-43 181.0 612 32.5
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 4.7e-43 180.6 840 28.2
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 8.0e-43 179.9 991 25.8
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.4e-42 179.1 386 36.3
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.4e-42 179.1 386 36.3
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 3.0e-42 177.9 459 35.1
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 8.8e-42 176.4 386 36.0
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 1.2e-41 176.0 922 27.1
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 2.0e-41 175.3 934 27.6
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.4e-41 174.5 935 27.3
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.4e-41 174.5 926 27.3
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.4e-41 174.1 934 27.6
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 7.5e-41 173.3 794 28.8
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 1.3e-40 172.6 378 36.5
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.2e-40 171.8 568 31.2
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 1.1e-39 169.5 780 27.1
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.1e-39 167.9 847 29.3
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 4.1e-39 167.5 917 27.0
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 2.0e-38 165.2 348 37.4
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 2.7e-38 164.9 392 36.0
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 5.9e-38 163.7 963 27.1
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 7.7e-38 163.3 350 38.0
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 1.0e-37 162.9 464 34.1
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 2.3e-37 161.8 887 27.1
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 3.8e-37 161.0 402 36.3
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 5.0e-37 160.6 940 26.3
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 2.5e-36 158.3 388 36.3
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 9.5e-36 156.4 370 37.6
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 1.6e-35 155.6 625 30.4
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.8e-35 154.8 358 35.5
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 3.6e-35 154.5 366 36.6
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 4.7e-35 154.1 1016 26.1
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 6.1e-35 153.7 956 26.0
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 8.0e-35 153.3 384 35.9
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.4e-34 152.5 399 35.3
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 3.0e-34 151.4 848 27.7
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 5.2e-34 150.6 900 26.0
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 8.9e-34 149.8 567 30.7
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.5e-33 149.1 418 32.1
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 2.6e-33 148.3 778 28.4
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 4.4e-33 147.5 930 26.2
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 5.7e-33 147.1 968 26.4
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 5.7e-33 147.1 427 33.0
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 5.7e-33 147.1 581 31.5
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.3e-32 146.0 679 28.4
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 2.2e-32 145.2 419 33.9
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.9e-32 144.8 430 32.1
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 2.9e-32 144.8 415 34.7
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 3.7e-32 144.4 392 33.9
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.7e-32 144.4 926 26.0
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 3.7e-32 144.4 591 31.0
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 6.4e-32 143.7 785 27.9
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.1e-31 142.9 392 33.2
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 1.4e-31 142.5 931 27.1
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.8e-31 142.1 1139 25.1
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 1.8e-31 142.1 422 33.6
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.2e-31 141.4 346 36.1
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.2e-31 141.4 360 32.5
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.1e-31 141.0 559 29.5
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 5.4e-31 140.6 590 29.5
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.6e-30 139.0 862 24.9
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 7.8e-30 136.7 931 26.5
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.7e-29 135.6 562 29.0
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 2.3e-29 135.2 459 30.5
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 5.0e-29 134.0 337 34.7
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 6.6e-29 133.7 201 43.3
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.5e-28 132.5 623 27.9
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.9e-28 132.1 683 27.5
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 4.3e-28 131.0 368 33.7
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 7.3e-28 130.2 774 27.1
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 1.2e-25 122.9 370 33.0
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 2.0e-25 122.1 907 25.2
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 3.4e-25 121.3 366 30.1
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 7.8e-22 110.2 479 29.0
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 7.8e-22 110.2 785 25.0
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 2.3e-21 108.6 392 30.6
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 2.5e-20 105.1 684 27.0
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 3.0e-13 81.6 95 49.5
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.6e-12 77.4 507 25.2
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.6e-12 77.4 401 27.9
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 4.7e-11 74.3 219 29.2
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 5.2e-10 70.9 79 55.7
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 2.6e-09 68.6 233 26.6
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 6.4e-08 63.9 236 24.2
Mapoly0011s0209 Marchantia polymorpha HOM05D003788 ORTHO05D253274 8.4e-08 63.5 141 31.9
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.1e-07 63.2 157 36.3
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 1.4e-07 62.8 70 48.6
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 1.4e-07 62.8 216 25.5
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.4e-07 62.0 189 28.0
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 9.2e-07 60.1 96 32.3
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.6e-06 59.3 197 26.9
Duzib151G0883 Durio zibethinus HOM05D010496 ORTHO05D010879 4.6e-06 57.8 254 26.8


User provided reference genes

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