Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 0.0e+00 1910.2 997 100.0
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 0.0e+00 1476.5 1008 79.7
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 0.0e+00 1391.3 1007 76.1
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 0.0e+00 1351.3 1015 75.0
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 0.0e+00 1286.9 1017 72.5
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 0.0e+00 1099.3 863 71.7
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-304 1049.7 1078 61.2
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 5.5e-304 1047.7 1023 61.1
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 5.7e-301 1037.7 1027 60.8
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 6.1e-295 1017.7 1038 60.7
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 1.8e-294 1016.1 1038 60.7
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-293 1013.1 1027 59.8
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 1.3e-289 1000.0 1063 61.0
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 3.8e-289 998.4 1056 61.3
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 3.8e-289 998.4 1056 61.3
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 1.2e-285 986.9 1082 59.5
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 2.8e-279 965.7 1025 60.5
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 4.0e-278 961.8 1017 61.8
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 2.2e-276 956.1 1040 59.5
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 8.6e-273 944.1 1036 58.1
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 5.8e-269 931.4 1063 58.0
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 7.1e-267 924.5 1070 57.5
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 3.1e-254 882.5 1014 58.4
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 1.5e-229 800.4 894 59.5
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 8.7e-217 758.1 1097 51.3
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.1e-163 581.6 1084 44.6
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 6.0e-133 479.6 1001 41.9
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.0e-132 478.8 1038 40.7
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 3.5e-125 453.8 1025 39.7
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 6.2e-122 443.0 1025 40.3
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 3.1e-121 440.7 1035 39.7
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 6.4e-119 433.0 1037 39.4
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 4.1e-105 387.1 997 36.2
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 7.6e-104 382.9 996 36.1
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 1.0e-103 382.5 971 37.9
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 1.7e-103 381.7 994 38.0
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 6.1e-101 373.2 994 35.5
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 4.8e-98 363.6 967 37.1
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 8.2e-98 362.8 1005 36.3
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 1.8e-97 361.7 1007 35.7
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 4.1e-97 360.5 967 36.9
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 9.1e-97 359.4 960 36.5
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 1.3e-95 355.5 1013 35.6
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 5.9e-72 276.9 1230 29.7
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-71 275.0 768 36.2
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 6.8e-68 263.5 1117 29.5
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 3.4e-67 261.2 1231 28.7
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 9.8e-67 259.6 1218 28.7
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 2.8e-66 258.1 1207 28.3
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 6.3e-66 256.9 1165 28.1
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 1.4e-65 255.8 1173 28.7
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 7.0e-65 253.4 1172 29.2
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.7e-64 250.0 1158 28.4
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.3e-63 249.2 1170 30.3
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.3e-63 248.4 1165 30.2
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 6.5e-63 246.9 1151 28.1
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 8.6e-63 246.5 1147 28.9
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 8.6e-63 246.5 1157 27.8
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.1e-62 246.1 1156 28.0
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.1e-62 246.1 1156 28.0
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 1.1e-62 246.1 1173 30.3
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 4.2e-62 244.2 1197 28.5
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 7.2e-62 243.4 1207 28.3
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 9.5e-62 243.0 1157 28.0
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 3.6e-61 241.1 1149 27.6
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 4.7e-61 240.7 1220 28.4
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 4.7e-61 240.7 1185 27.7
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.0e-60 239.6 1063 30.1
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 1.0e-60 239.6 1063 30.1
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 1.8e-60 238.8 1188 27.8
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 4.0e-60 237.7 1185 27.9
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 1.5e-59 235.7 1048 29.8
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 2.6e-59 235.0 1169 28.2
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 4.1e-57 227.6 1168 29.1
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 5.4e-57 227.3 1099 28.0
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 7.0e-57 226.9 1078 28.6
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.0e-55 223.0 1229 27.1
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 1.3e-55 222.6 1098 28.9
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.5e-54 218.4 1108 28.2
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 3.3e-54 218.0 1072 28.5
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 5.6e-54 217.2 1196 27.3
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 9.5e-54 216.5 1227 27.9
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 9.5e-54 216.5 1032 29.2
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 2.8e-53 214.9 1206 27.6
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.0e-52 211.5 1191 28.0
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 2.6e-51 208.4 1241 26.8
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.4e-51 208.0 1012 28.4
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 3.7e-50 204.5 670 34.2
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 3.7e-50 204.5 1161 28.1
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 3.2e-49 201.4 651 34.4
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 4.1e-49 201.1 1285 26.5
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 1.6e-48 199.1 978 27.6
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 3.9e-47 194.5 1206 27.0
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 1.9e-46 192.2 1216 26.7
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 5.6e-46 190.7 1182 26.6
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 5.6e-46 190.7 1249 26.3
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 7.3e-46 190.3 1134 26.5
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.6e-45 189.1 1118 26.6
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 2.8e-45 188.3 1251 25.5
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.6e-45 188.0 1182 26.5
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 8.0e-45 186.8 1065 27.2
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.8e-44 185.7 1197 26.2
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 5.2e-44 184.1 1128 26.1
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 5.2e-44 184.1 1174 27.8
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.6e-43 181.8 1200 26.3
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 7.5e-43 180.3 1122 26.5
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 2.9e-42 178.3 705 31.6
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 1.4e-41 176.0 1031 26.3
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 5.4e-41 174.1 1144 26.6
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 7.0e-41 173.7 1179 26.6
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.6e-40 172.6 1225 25.9
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 6.0e-40 170.6 1138 27.5
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 1.3e-39 169.5 484 33.9
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.7e-39 169.1 1152 27.0
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 2.3e-39 168.7 979 26.6
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 3.9e-39 167.9 1116 25.9
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 1.6e-37 162.5 1196 26.8
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.8e-37 161.8 1109 27.4
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 1.4e-36 159.5 1200 25.9
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 1.4e-36 159.5 1086 26.2
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.8e-36 159.1 1267 24.7
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.2e-35 156.4 1225 25.6
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 4.4e-35 154.5 478 33.3
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.2e-34 152.1 752 28.1
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 1.6e-32 146.0 1178 26.3
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 2.1e-32 145.6 1083 25.4
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 2.1e-32 145.6 1117 24.9
BcaC03g14237 Brassica carinata HOM05D003788 ORTHO05D004633 6.0e-32 144.1 143 58.7
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 7.8e-32 143.7 980 26.7
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 1.0e-31 143.3 1155 26.8
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 2.3e-31 142.1 1005 26.1
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 3.0e-31 141.7 310 36.1
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 1.5e-30 139.4 479 30.3
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 1.5e-30 139.4 794 27.2
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 1.9e-30 139.0 1058 25.0
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 5.6e-30 137.5 959 26.3
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 1.2e-29 136.3 1115 25.1
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 4.7e-29 134.4 1011 26.0
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 6.2e-29 134.0 386 32.6
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.4e-28 132.9 1025 25.7
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 6.8e-28 130.6 969 25.4
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 6.8e-28 130.6 212 47.2
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 8.9e-28 130.2 317 33.4
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 4.4e-27 127.9 391 33.0
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 7.6e-27 127.1 377 33.4
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.7e-26 125.9 360 32.2
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.9e-26 125.2 1142 24.2
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 6.4e-26 124.0 413 33.7
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 6.4e-26 124.0 992 25.3
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 1.1e-25 123.2 1048 24.8
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.4e-25 122.9 392 30.6
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 1.9e-25 122.5 353 32.6
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 5.4e-25 120.9 981 25.2
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 7.1e-25 120.6 338 32.2
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 9.2e-25 120.2 682 27.7
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 2.7e-24 118.6 1034 25.6
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 7.8e-24 117.1 624 28.0
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 3.9e-23 114.8 213 41.8
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 3.9e-23 114.8 282 33.7
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 8.7e-23 113.6 1132 24.1
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 5.2e-20 104.4 288 31.6
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 2.0e-19 102.4 1029 24.6
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 4.4e-19 101.3 756 27.0
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.5e-14 86.3 205 37.6
BcaC03g16336 Brassica carinata HOM05D021359 ORTHO05D016065 1.7e-10 72.8 106 46.2
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.7e-08 65.5 212 27.4
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 2.5e-06 58.9 258 25.6
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 5.6e-06 57.8 348 26.4


User provided reference genes

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