Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 1.8e-116 422.5 209 100.0
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.4e-115 418.3 209 98.6
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 9.4e-113 410.2 209 96.2
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 1.6e-112 409.5 209 95.7
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 6.1e-112 407.5 209 95.7
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 3.0e-111 405.2 209 94.3
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 5.1e-111 404.4 206 95.6
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 5.1e-111 404.4 206 95.6
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 5.1e-111 404.4 206 95.6
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 2.0e-110 402.5 206 96.1
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 2.0e-110 402.5 206 96.1
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 2.0e-110 402.5 206 95.1
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 5.7e-110 401.0 206 94.7
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 9.7e-110 400.2 206 94.7
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 3.7e-109 398.3 209 93.3
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.8e-108 396.0 206 94.2
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 3.1e-108 395.2 209 92.3
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 9.1e-108 393.7 206 93.2
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 1.2e-107 393.3 209 90.9
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 1.2e-107 393.3 209 90.9
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 3.5e-107 391.7 209 92.3
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 5.0e-106 387.9 219 87.2
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 3.9e-103 378.3 209 89.5
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 3.6e-88 328.6 206 76.2
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.4e-87 326.6 203 75.9
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.8e-87 326.2 203 76.8
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 4.0e-87 325.1 202 76.2
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 8.8e-87 323.9 202 75.7
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.2e-86 323.6 202 75.7
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.2e-86 323.6 202 76.2
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 4.4e-86 321.6 197 76.1
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 2.8e-85 318.9 202 75.7
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 9.1e-84 313.9 193 77.2
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 1.6e-83 313.2 203 72.4
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 2.9e-82 308.9 205 72.7
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 3.8e-82 308.5 203 72.9
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 3.8e-82 308.5 203 72.9
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 5.0e-82 308.1 203 73.4
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 8.6e-82 307.4 203 71.9
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 8.6e-82 307.4 201 71.1
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 1.1e-81 307.0 204 70.6
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 1.5e-81 306.6 202 71.3
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 1.9e-81 306.2 203 71.9
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 1.9e-81 306.2 202 72.3
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.5e-81 305.8 203 70.4
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 2.5e-81 305.8 203 71.4
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.5e-81 305.8 206 74.3
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.2e-81 305.1 203 70.0
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 4.2e-81 305.1 203 70.9
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 4.2e-81 305.1 206 73.3
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.5e-81 304.7 206 74.3
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 5.5e-81 304.7 203 72.9
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 9.5e-81 303.9 203 70.4
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 1.2e-80 303.5 205 71.2
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 1.2e-80 303.5 205 71.2
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 2.8e-80 302.4 203 71.9
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.8e-80 302.4 203 71.9
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 2.8e-80 302.4 206 72.3
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 4.7e-80 301.6 202 71.3
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 8.0e-80 300.8 224 66.1
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.0e-79 300.4 206 70.9
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.0e-79 300.4 206 70.9
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.4e-79 300.1 203 70.9
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.8e-79 299.7 203 70.0
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.8e-79 299.7 204 69.6
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 5.2e-79 298.1 200 70.5
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 5.2e-79 298.1 204 71.6
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 5.2e-79 298.1 203 70.9
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 5.2e-79 298.1 205 72.2
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 8.9e-79 297.4 204 68.6
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.2e-78 297.0 203 71.9
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 1.2e-78 297.0 205 68.8
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.5e-78 296.6 203 70.9
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 2.6e-78 295.8 206 71.4
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 4.4e-78 295.0 202 70.3
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 5.7e-78 294.7 202 69.3
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.3e-77 293.5 204 71.1
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 2.2e-77 292.7 206 70.9
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.1e-76 290.4 203 67.0
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.1e-76 290.4 202 68.8
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.1e-76 290.4 203 70.0
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 2.4e-76 289.3 204 69.1
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 4.1e-76 288.5 204 68.6
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 7.0e-76 287.7 202 67.3
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 7.0e-76 287.7 203 69.5
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 9.2e-76 287.3 259 59.5
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 9.2e-76 287.3 203 69.0
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 1.2e-75 287.0 201 68.7
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 1.6e-75 286.6 202 67.8
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.6e-75 286.6 204 68.1
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 5.9e-75 284.6 204 67.6
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 5.9e-75 284.6 203 64.5
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.0e-74 283.9 204 67.6
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 3.9e-74 282.0 205 68.8
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 3.9e-74 282.0 199 68.3
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 5.0e-74 281.6 204 67.6
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.5e-73 280.0 203 69.5
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 2.5e-73 279.3 193 67.4
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 2.5e-73 279.3 204 68.6
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 3.3e-73 278.9 203 64.5
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 4.3e-73 278.5 210 65.2
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 8.0e-72 274.2 206 67.0
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.0e-71 273.9 203 66.5
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 1.0e-71 273.9 204 66.2
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 1.8e-71 273.1 205 67.3
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 8.9e-71 270.8 203 64.0
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.8e-70 268.1 203 63.1
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.3e-69 266.9 207 61.4
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.9e-69 265.8 204 62.7
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.7e-69 265.4 203 64.5
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 6.4e-69 264.6 203 64.0
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 6.4e-69 264.6 208 63.5
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 8.3e-69 264.2 205 59.5
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 2.4e-68 262.7 203 64.5
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 1.5e-65 253.4 199 57.8
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 2.8e-64 249.2 204 56.9
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 1.8e-63 246.5 206 59.7
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 4.4e-62 241.9 194 59.8
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 2.2e-61 239.6 154 76.6
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 3.2e-60 235.7 208 53.8
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 3.1e-55 219.2 212 51.4
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 4.0e-55 218.8 212 51.9
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.2e-53 213.0 138 74.6
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.2e-53 213.0 203 54.2
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 2.9e-53 212.6 145 71.7
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 1.4e-52 210.3 203 54.2
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 7.8e-51 204.5 140 73.6
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.2e-48 194.9 140 70.7
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.4e-47 193.7 152 67.1
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 6.0e-43 178.3 128 68.8
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 3.0e-42 176.0 206 46.6
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.3e-41 172.2 135 61.5
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 5.4e-36 155.2 184 47.8
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 1.1e-28 131.0 195 36.9
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 7.1e-28 128.3 199 41.2
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 1.3e-26 124.0 99 61.6
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 1.5e-25 120.6 126 48.4
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.4e-22 109.4 52 96.2
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 5.8e-22 108.6 203 36.0
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.7e-21 107.1 77 62.3
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 8.4e-21 104.8 69 73.9
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 6.0e-19 98.6 137 42.3
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 1.3e-18 97.4 66 68.2
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 5.1e-18 95.5 66 62.1
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-17 94.0 67 65.7
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 4.2e-12 75.9 42 78.6
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 3.5e-11 72.8 70 62.9
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 8.7e-10 68.2 118 34.7
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.5e-09 66.6 48 60.4
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 2.5e-09 66.6 48 60.4
A10p15670 Brassica napus HOM05D000083 ORTHO05D000196 4.8e-08 62.4 38 84.2
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.0e-07 58.2 36 69.4


User provided reference genes

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