Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 0.0e+00 2897.5 1671 100.0
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 0.0e+00 2254.6 1748 78.8
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 0.0e+00 2192.5 1720 77.8
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 0.0e+00 1914.0 1813 68.6
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 0.0e+00 1830.8 1848 65.0
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 0.0e+00 1698.7 1833 61.6
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 0.0e+00 1659.4 1828 61.2
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 0.0e+00 1635.5 1829 60.4
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 0.0e+00 1598.6 1898 58.1
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 0.0e+00 1473.4 1797 58.0
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 0.0e+00 1431.4 1894 55.6
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 1.3e-284 984.2 1924 45.2
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 2.0e-229 800.8 1038 50.7
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 7.0e-110 403.7 296 73.0
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 2.0e-104 385.6 388 62.1
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.9e-75 289.3 1735 29.3
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 3.3e-75 288.5 1932 28.8
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 1.9e-70 272.7 1757 26.4
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 5.4e-70 271.2 1980 27.9
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 5.4e-70 271.2 1955 28.4
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 7.1e-70 270.8 1982 27.5
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.6e-69 269.6 1966 27.1
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.6e-69 269.6 1709 29.3
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 5.6e-67 261.2 732 38.9
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 2.1e-66 259.2 1820 28.4
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 2.4e-65 255.8 1758 28.7
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 2.6e-64 252.3 1820 28.1
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.9e-63 248.8 1815 28.7
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 8.4e-63 247.3 1921 27.5
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 1.2e-61 243.4 660 39.5
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 2.1e-61 242.7 1967 27.3
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.8e-60 239.6 1790 27.9
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.5e-59 236.5 1938 26.7
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 4.3e-59 235.0 685 41.3
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 2.1e-58 232.6 1974 27.5
C02p15810 Brassica napus HOM05D004836 ORTHO05D017167 2.8e-58 232.3 213 63.8
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.8e-58 232.3 1838 28.5
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 5.3e-57 228.0 779 38.9
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.6e-56 225.7 1884 28.6
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.5e-56 224.9 1921 26.6
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 4.5e-56 224.9 1829 26.1
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 3.2e-54 218.8 1785 27.4
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 9.3e-54 217.2 1788 26.0
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 3.0e-52 212.2 1676 26.2
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.0e-52 212.2 1840 26.6
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 1.3e-50 206.8 661 37.2
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.7e-50 205.3 1742 26.2
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 3.7e-50 205.3 1920 26.5
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.4e-49 203.4 1839 26.2
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.5e-48 199.9 1907 27.7
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 7.6e-48 197.6 1903 26.2
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.0e-47 197.2 683 40.6
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.3e-47 196.8 2007 27.0
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.7e-47 196.4 1717 25.1
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.2e-47 196.1 1915 26.2
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 3.8e-47 195.3 767 29.6
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 1.4e-46 193.4 1769 26.2
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.4e-46 193.4 505 42.6
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 2.5e-46 192.6 1776 27.3
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.5e-46 192.6 1927 25.9
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 2.7e-45 189.1 1806 28.6
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 1.8e-44 186.4 1857 25.1
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 3.9e-44 185.3 671 33.7
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.1e-43 183.7 1697 27.3
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 5.7e-43 181.4 646 34.4
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 3.7e-42 178.7 662 38.4
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 4.8e-42 178.3 672 33.8
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 6.3e-42 177.9 672 33.8
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.1e-41 177.2 1849 26.8
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 1.4e-41 176.8 660 34.2
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.8e-41 176.4 390 37.4
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.8e-41 176.4 1779 24.8
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 1.2e-40 173.7 152 65.1
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.0e-40 172.9 1845 27.5
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 2.6e-40 172.6 685 34.0
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 1.3e-39 170.2 1769 26.1
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.1e-38 167.2 677 34.4
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.9e-38 166.4 656 31.6
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 3.2e-38 165.6 549 39.5
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 7.2e-38 164.5 1742 25.7
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.3e-36 159.5 1848 25.4
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 8.8e-36 157.5 1830 26.9
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 2.0e-35 156.4 1819 25.2
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 4.3e-35 155.2 1831 25.8
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 7.4e-35 154.5 445 33.3
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 3.1e-33 149.1 1543 24.1
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 4.1e-33 148.7 1802 24.3
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 5.3e-33 148.3 1804 24.7
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 1.2e-32 147.1 719 29.9
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.3e-31 143.7 1870 25.5
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.9e-31 142.5 1746 25.1
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 8.5e-31 141.0 422 33.9
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-30 140.6 510 41.2
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 4.2e-30 138.7 1646 23.5
BcaB08g35942 Brassica carinata HOM05D004836 ORTHO05D005150 1.2e-29 137.1 155 56.8
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 1.6e-29 136.7 1769 24.2
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 6.1e-29 134.8 662 32.0
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 6.1e-29 134.8 666 32.0
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 6.1e-29 134.8 1903 24.3
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 7.9e-29 134.4 1749 23.4
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 3.0e-28 132.5 1811 26.7
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 2.0e-27 129.8 661 36.0
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 2.6e-27 129.4 1843 23.9
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 3.1e-25 122.5 318 34.3
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 5.3e-25 121.7 1747 22.8
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 4.5e-24 118.6 651 33.0
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 5.0e-23 115.2 1803 25.3
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 7.2e-22 111.3 1809 23.9
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.6e-21 110.2 1712 27.0
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 8.0e-21 107.8 1708 23.1
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.8e-20 106.7 1572 22.5
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.3e-18 100.5 699 30.9
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 6.3e-18 98.2 679 32.4
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.6e-16 93.6 338 29.3
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.2e-15 89.7 1707 22.4
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 5.0e-15 88.6 1833 25.9
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 6.5e-15 88.2 438 27.4
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 1.1e-14 87.4 393 28.0
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.5e-14 87.0 322 28.6
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 1.9e-14 86.7 88 59.1
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.2e-14 85.9 92 50.0
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 1.2e-13 84.0 411 28.2
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 1.2e-13 84.0 75 50.7
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.6e-13 83.6 64 60.9
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.6e-13 83.6 1845 25.1
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.1e-13 83.2 1736 22.4
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 3.6e-13 82.4 458 35.4
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 6.1e-13 81.6 268 31.7
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 8.0e-13 81.3 268 31.3
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 1.8e-12 80.1 56 62.5
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.7e-10 73.6 122 41.8
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.2e-10 73.2 176 34.7
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 6.3e-10 71.6 84 40.5
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 6.3e-10 71.6 98 40.8
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 1.1e-09 70.9 163 36.2
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.8e-09 70.1 282 29.8
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 3.1e-09 69.3 54 59.3
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 7.0e-09 68.2 89 47.2
C02p15800 Brassica napus HOM05D000026 ORTHO05D017167 1.2e-08 67.4 108 46.3
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 1.6e-08 67.0 58 50.0
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 7.7e-08 64.7 66 51.5
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 2.2e-07 63.2 59 59.3


User provided reference genes

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