Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 9.0e-136 486.9 240 100.0
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 1.9e-117 426.0 240 87.5
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 4.0e-115 418.3 240 86.7
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 2.4e-112 409.1 239 84.5
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 4.1e-112 408.3 239 84.1
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 5.3e-112 407.9 240 82.5
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.2e-111 406.8 240 85.0
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 1.6e-111 406.4 240 82.5
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.3e-110 403.3 238 82.8
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 8.5e-110 400.6 238 81.5
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 8.5e-110 400.6 238 81.1
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 4.7e-108 394.8 237 81.0
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 3.8e-102 375.2 235 75.7
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 3.5e-95 352.1 235 71.9
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 1.3e-94 350.1 237 71.3
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 2.9e-94 349.0 245 69.0
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 3.8e-94 348.6 238 71.0
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 8.6e-94 347.4 208 80.3
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 1.9e-93 346.3 208 81.2
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 4.3e-93 345.1 235 69.4
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 1.2e-92 343.6 235 68.1
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 1.2e-92 343.6 235 68.9
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 2.1e-92 342.8 242 68.2
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 2.1e-92 342.8 247 66.4
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 3.6e-92 342.0 243 66.7
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 6.1e-92 341.3 244 66.8
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 8.0e-92 340.9 209 81.3
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.0e-91 340.5 239 66.1
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 1.0e-91 340.5 243 67.1
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 2.3e-91 339.3 244 67.2
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 2.3e-91 339.3 243 66.7
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 2.3e-91 339.3 243 66.7
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 2.3e-91 339.3 235 70.2
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 3.0e-91 339.0 238 68.9
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 5.2e-91 338.2 243 66.7
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 5.2e-91 338.2 244 66.8
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 5.2e-91 338.2 235 67.7
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 6.8e-91 337.8 243 67.9
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 6.8e-91 337.8 248 66.1
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 8.9e-91 337.4 209 80.9
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 8.9e-91 337.4 242 66.9
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 1.5e-90 336.7 243 65.8
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 1.5e-90 336.7 209 80.4
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.6e-90 335.9 247 64.4
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 2.6e-90 335.9 243 65.8
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 2.6e-90 335.9 243 65.0
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.6e-90 335.9 237 66.2
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 3.4e-90 335.5 247 64.0
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 4.4e-90 335.1 235 67.2
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 7.5e-90 334.3 209 79.4
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 1.7e-89 333.2 243 65.8
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 2.2e-89 332.8 245 64.5
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 6.4e-89 331.3 243 65.0
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 6.4e-89 331.3 237 65.0
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 8.3e-89 330.9 243 64.6
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 8.3e-89 330.9 243 65.0
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 1.4e-88 330.1 237 65.8
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.4e-88 330.1 243 64.6
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 1.8e-88 329.7 244 65.2
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.2e-88 328.9 237 65.4
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 3.2e-88 328.9 237 65.8
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 4.1e-88 328.6 248 62.1
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 4.1e-88 328.6 243 63.8
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.2e-87 327.0 242 66.1
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 1.2e-87 327.0 237 64.6
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.0e-87 326.2 237 65.4
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 2.0e-87 326.2 237 65.0
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 4.6e-87 325.1 237 65.4
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 5.9e-87 324.7 237 65.0
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 3.0e-86 322.4 217 69.1
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 3.9e-86 322.0 240 65.8
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 3.9e-86 322.0 243 64.2
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 5.0e-86 321.6 245 63.7
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 6.6e-86 321.2 244 63.9
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 6.6e-86 321.2 242 63.6
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.9e-85 319.7 238 65.1
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.9e-85 319.7 235 66.0
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 5.6e-85 318.2 235 64.3
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 7.3e-85 317.8 235 65.5
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 9.5e-85 317.4 280 57.9
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 9.5e-85 317.4 243 66.3
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.6e-84 315.5 245 62.4
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 1.4e-83 313.5 245 62.4
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 5.2e-83 311.6 217 68.2
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 8.9e-83 310.8 242 64.5
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 7.5e-82 307.8 255 59.6
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 6.4e-81 304.7 271 58.3
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 4.1e-80 302.0 243 62.1
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 7.8e-79 297.7 168 86.9
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 3.0e-78 295.8 236 62.3
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.4e-75 287.0 199 66.8
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 4.0e-75 285.4 199 67.3
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.8e-75 284.6 216 63.9
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 1.5e-74 283.5 200 67.0
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 4.4e-74 282.0 196 67.3
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 8.3e-73 277.7 192 67.7
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 1.1e-72 277.3 265 53.6
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.9e-72 276.6 239 54.8
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 1.9e-72 276.6 243 58.4
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 4.1e-72 275.4 178 71.9
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 9.2e-72 274.2 234 58.5
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 9.2e-72 274.2 239 54.8
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 2.7e-71 272.7 238 55.9
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.5e-71 272.3 239 55.2
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.0e-70 270.8 239 54.0
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 3.9e-70 268.9 255 53.7
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 6.6e-70 268.1 193 66.8
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.5e-69 266.9 196 64.8
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.8e-68 262.7 240 53.3
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 1.1e-64 250.8 186 64.5
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 1.2e-63 247.3 183 65.0
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.0e-62 244.2 233 51.9
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 2.5e-61 239.6 224 58.0
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 2.5e-61 239.6 237 53.2
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 7.3e-61 238.0 230 57.0
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 9.6e-61 237.7 164 67.7
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.2e-58 230.7 242 52.9
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 9.9e-58 227.6 218 52.8
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.7e-57 226.9 194 61.9
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 2.1e-55 219.9 234 52.6
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-55 219.5 214 51.4
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.0e-55 218.4 193 57.0
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 7.8e-55 218.0 197 56.9
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 7.8e-55 218.0 215 50.7
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 3.0e-54 216.1 172 62.8
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 1.1e-53 214.2 241 51.0
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.8e-52 209.5 196 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.0e-50 203.4 196 52.0
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 3.4e-50 202.6 142 68.3
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 4.9e-49 198.7 172 58.7
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 5.4e-48 195.3 129 72.1
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.3e-46 190.7 189 52.9
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 3.3e-45 186.0 180 51.7
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 9.9e-42 174.5 107 74.8
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 1.8e-38 163.7 219 39.3
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.2e-34 151.0 104 65.4
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.2e-34 151.0 104 65.4
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 6.5e-33 145.2 106 66.0
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.5e-32 143.3 103 65.0
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 2.3e-30 136.7 100 64.0
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.9e-24 117.1 156 42.9
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 3.2e-24 116.3 215 36.3
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 6.7e-22 108.6 179 35.8
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.6e-18 96.7 101 44.6
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.6e-15 86.3 69 58.0
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 6.3e-12 75.5 216 27.3
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 6.9e-11 72.0 69 55.1
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 9.1e-11 71.6 82 42.7
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 9.1e-11 71.6 55 60.0
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 2.0e-10 70.5 65 55.4
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.1e-07 60.5 82 37.8
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.3e-06 57.0 46 60.9


User provided reference genes

Program Settings